HEADER TRANSPORT PROTEIN 23-MAR-20 6YE0 TITLE E.COLI'S PUTRESCINE RECEPTOR POTF COMPLEXED WITH PUTRESCINE CAVEAT 6YE0 JFN B 402 HAS WRONG CHIRALITY AT ATOM C08 JFN B 403 HAS CAVEAT 2 6YE0 WRONG CHIRALITY AT ATOM C08 ONT A 403 HAS WRONG CHIRALITY CAVEAT 3 6YE0 AT ATOM C02 JFN A 404 HAS WRONG CHIRALITY AT ATOM C08 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTRESCINE-BINDING PERIPLASMIC PROTEIN; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: POTF, B0854, JW0838; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21B(+) KEYWDS PERIPLASMIC BINDING PROTEIN, E.COLI, PUTRESCINE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SHANMUGARATNAM,P.KROEGER,B.HOCKER REVDAT 3 24-JAN-24 6YE0 1 REMARK REVDAT 2 19-MAY-21 6YE0 1 JRNL ATOM REVDAT 1 20-JAN-21 6YE0 0 JRNL AUTH P.KROGER,S.SHANMUGARATNAM,N.FERRUZ,K.SCHWEIMER,B.HOCKER JRNL TITL A COMPREHENSIVE BINDING STUDY ILLUSTRATES LIGAND RECOGNITION JRNL TITL 2 IN THE PERIPLASMIC BINDING PROTEIN POTF. JRNL REF STRUCTURE V. 29 433 2021 JRNL REFN ISSN 0969-2126 JRNL PMID 33406388 JRNL DOI 10.1016/J.STR.2020.12.005 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1-3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 100972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6400 - 4.0100 1.00 7064 151 0.1484 0.1678 REMARK 3 2 4.0100 - 3.1800 1.00 6744 143 0.1478 0.1701 REMARK 3 3 3.1800 - 2.7800 1.00 6696 142 0.1667 0.1934 REMARK 3 4 2.7800 - 2.5300 1.00 6597 140 0.1628 0.1991 REMARK 3 5 2.5300 - 2.3500 1.00 6650 141 0.1663 0.2085 REMARK 3 6 2.3500 - 2.2100 1.00 6579 140 0.1672 0.2146 REMARK 3 7 2.2100 - 2.1000 1.00 6607 140 0.1774 0.2189 REMARK 3 8 2.1000 - 2.0100 1.00 6586 140 0.1859 0.2301 REMARK 3 9 2.0100 - 1.9300 1.00 6518 138 0.2053 0.2229 REMARK 3 10 1.9300 - 1.8600 1.00 6528 138 0.2236 0.2496 REMARK 3 11 1.8600 - 1.8000 1.00 6587 140 0.2403 0.2566 REMARK 3 12 1.8000 - 1.7500 1.00 6537 139 0.2532 0.2692 REMARK 3 13 1.7500 - 1.7100 1.00 6504 138 0.2852 0.3255 REMARK 3 14 1.7100 - 1.6600 1.00 6531 138 0.3117 0.3242 REMARK 3 15 1.6600 - 1.6300 0.94 6145 131 0.3462 0.3459 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.209 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.513 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5609 REMARK 3 ANGLE : 0.909 7626 REMARK 3 CHIRALITY : 0.063 842 REMARK 3 PLANARITY : 0.007 984 REMARK 3 DIHEDRAL : 16.413 2068 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 29 THROUGH 369) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2576 7.2345 -19.9446 REMARK 3 T TENSOR REMARK 3 T11: 0.2200 T22: 0.2794 REMARK 3 T33: 0.2028 T12: -0.0941 REMARK 3 T13: -0.0538 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 2.5701 L22: 1.0037 REMARK 3 L33: 1.0509 L12: -0.2401 REMARK 3 L13: -0.2059 L23: 0.1762 REMARK 3 S TENSOR REMARK 3 S11: 0.1020 S12: -0.4458 S13: 0.1409 REMARK 3 S21: 0.0808 S22: -0.0355 S23: -0.1471 REMARK 3 S31: 0.0012 S32: -0.0499 S33: -0.0102 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 29 THROUGH 369) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5137 16.8294 -25.9075 REMARK 3 T TENSOR REMARK 3 T11: 0.2117 T22: 0.2177 REMARK 3 T33: 0.1808 T12: -0.0650 REMARK 3 T13: -0.0228 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 1.7075 L22: 1.5013 REMARK 3 L33: 1.0960 L12: -0.4122 REMARK 3 L13: 0.3283 L23: -0.0909 REMARK 3 S TENSOR REMARK 3 S11: -0.0874 S12: -0.0744 S13: 0.0702 REMARK 3 S21: 0.1128 S22: -0.0704 S23: 0.0738 REMARK 3 S31: -0.0519 S32: 0.1480 S33: -0.0120 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 29 THROUGH 30 OR REMARK 3 RESID 32 THROUGH 90 OR RESID 92 THROUGH REMARK 3 296 OR RESID 298 THROUGH 329 OR RESID 331 REMARK 3 THROUGH 355 OR RESID 357 OR RESID 359 REMARK 3 THROUGH 360 OR RESID 362 THROUGH 364 OR REMARK 3 RESID 366 THROUGH 367 OR RESID 369 OR REMARK 3 RESID 401)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 29 THROUGH 30 OR REMARK 3 RESID 32 THROUGH 90 OR RESID 92 THROUGH REMARK 3 296 OR RESID 298 THROUGH 329 OR RESID 331 REMARK 3 THROUGH 355 OR RESID 357 OR RESID 359 REMARK 3 THROUGH 360 OR RESID 362 THROUGH 364 OR REMARK 3 RESID 366 THROUGH 367 OR RESID 369 OR REMARK 3 RESID 401)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YE0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107470. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DCM SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20180409 REMARK 200 DATA SCALING SOFTWARE : XDS 20180409 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100972 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 45.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.12160 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 2.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1A99 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUMSULFATE, 0.1 M BICINE PH REMARK 280 8.8, 4.5% JEFFAMINE M600, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 181.70600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.85300 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 90.85300 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 181.70600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 27 REMARK 465 GLU B 28 REMARK 465 LYS B 370 REMARK 465 LEU B 371 REMARK 465 GLU B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 465 HIS B 377 REMARK 465 HIS B 378 REMARK 465 ALA A 27 REMARK 465 GLU A 28 REMARK 465 LYS A 370 REMARK 465 LEU A 371 REMARK 465 GLU A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 105 HD22 ASN A 297 1.44 REMARK 500 OE1 GLU B 108 O HOH B 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 115 HZ3 LYS A 270 1455 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 40 29.13 -146.36 REMARK 500 ALA B 136 -162.29 -161.54 REMARK 500 SER B 227 -29.62 -145.83 REMARK 500 TYR A 40 29.97 -146.56 REMARK 500 ALA A 136 -161.90 -164.78 REMARK 500 ASN A 199 40.42 -109.54 REMARK 500 SER A 227 -27.00 -144.41 REMARK 500 ASN A 288 71.77 -116.87 REMARK 500 SER A 368 42.24 -82.39 REMARK 500 SER A 368 42.10 -82.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PUT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JFN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JFN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ONW B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PUT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ONT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ONT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JFN A 404 DBREF 6YE0 B 27 370 UNP P31133 POTF_ECOLI 27 370 DBREF 6YE0 A 27 370 UNP P31133 POTF_ECOLI 27 370 SEQADV 6YE0 LEU B 371 UNP P31133 EXPRESSION TAG SEQADV 6YE0 GLU B 372 UNP P31133 EXPRESSION TAG SEQADV 6YE0 HIS B 373 UNP P31133 EXPRESSION TAG SEQADV 6YE0 HIS B 374 UNP P31133 EXPRESSION TAG SEQADV 6YE0 HIS B 375 UNP P31133 EXPRESSION TAG SEQADV 6YE0 HIS B 376 UNP P31133 EXPRESSION TAG SEQADV 6YE0 HIS B 377 UNP P31133 EXPRESSION TAG SEQADV 6YE0 HIS B 378 UNP P31133 EXPRESSION TAG SEQADV 6YE0 LEU A 371 UNP P31133 EXPRESSION TAG SEQADV 6YE0 GLU A 372 UNP P31133 EXPRESSION TAG SEQADV 6YE0 HIS A 373 UNP P31133 EXPRESSION TAG SEQADV 6YE0 HIS A 374 UNP P31133 EXPRESSION TAG SEQADV 6YE0 HIS A 375 UNP P31133 EXPRESSION TAG SEQADV 6YE0 HIS A 376 UNP P31133 EXPRESSION TAG SEQADV 6YE0 HIS A 377 UNP P31133 EXPRESSION TAG SEQADV 6YE0 HIS A 378 UNP P31133 EXPRESSION TAG SEQRES 1 B 352 ALA GLU GLN LYS THR LEU HIS ILE TYR ASN TRP SER ASP SEQRES 2 B 352 TYR ILE ALA PRO ASP THR VAL ALA ASN PHE GLU LYS GLU SEQRES 3 B 352 THR GLY ILE LYS VAL VAL TYR ASP VAL PHE ASP SER ASN SEQRES 4 B 352 GLU VAL LEU GLU GLY LYS LEU MET ALA GLY SER THR GLY SEQRES 5 B 352 PHE ASP LEU VAL VAL PRO SER ALA SER PHE LEU GLU ARG SEQRES 6 B 352 GLN LEU THR ALA GLY VAL PHE GLN PRO LEU ASP LYS SER SEQRES 7 B 352 LYS LEU PRO GLU TRP LYS ASN LEU ASP PRO GLU LEU LEU SEQRES 8 B 352 LYS LEU VAL ALA LYS HIS ASP PRO ASP ASN LYS PHE ALA SEQRES 9 B 352 MET PRO TYR MET TRP ALA THR THR GLY ILE GLY TYR ASN SEQRES 10 B 352 VAL ASP LYS VAL LYS ALA VAL LEU GLY GLU ASN ALA PRO SEQRES 11 B 352 VAL ASP SER TRP ASP LEU ILE LEU LYS PRO GLU ASN LEU SEQRES 12 B 352 GLU LYS LEU LYS SER CYS GLY VAL SER PHE LEU ASP ALA SEQRES 13 B 352 PRO GLU GLU VAL PHE ALA THR VAL LEU ASN TYR LEU GLY SEQRES 14 B 352 LYS ASP PRO ASN SER THR LYS ALA ASP ASP TYR THR GLY SEQRES 15 B 352 PRO ALA THR ASP LEU LEU LEU LYS LEU ARG PRO ASN ILE SEQRES 16 B 352 ARG TYR PHE HIS SER SER GLN TYR ILE ASN ASP LEU ALA SEQRES 17 B 352 ASN GLY ASP ILE CYS VAL ALA ILE GLY TRP ALA GLY ASP SEQRES 18 B 352 VAL TRP GLN ALA SER ASN ARG ALA LYS GLU ALA LYS ASN SEQRES 19 B 352 GLY VAL ASN VAL SER PHE SER ILE PRO LYS GLU GLY ALA SEQRES 20 B 352 MET ALA PHE PHE ASP VAL PHE ALA MET PRO ALA ASP ALA SEQRES 21 B 352 LYS ASN LYS ASP GLU ALA TYR GLN PHE LEU ASN TYR LEU SEQRES 22 B 352 LEU ARG PRO ASP VAL VAL ALA HIS ILE SER ASP HIS VAL SEQRES 23 B 352 PHE TYR ALA ASN ALA ASN LYS ALA ALA THR PRO LEU VAL SEQRES 24 B 352 SER ALA GLU VAL ARG GLU ASN PRO GLY ILE TYR PRO PRO SEQRES 25 B 352 ALA ASP VAL ARG ALA LYS LEU PHE THR LEU LYS VAL GLN SEQRES 26 B 352 ASP PRO LYS ILE ASP ARG VAL ARG THR ARG ALA TRP THR SEQRES 27 B 352 LYS VAL LYS SER GLY LYS LEU GLU HIS HIS HIS HIS HIS SEQRES 28 B 352 HIS SEQRES 1 A 352 ALA GLU GLN LYS THR LEU HIS ILE TYR ASN TRP SER ASP SEQRES 2 A 352 TYR ILE ALA PRO ASP THR VAL ALA ASN PHE GLU LYS GLU SEQRES 3 A 352 THR GLY ILE LYS VAL VAL TYR ASP VAL PHE ASP SER ASN SEQRES 4 A 352 GLU VAL LEU GLU GLY LYS LEU MET ALA GLY SER THR GLY SEQRES 5 A 352 PHE ASP LEU VAL VAL PRO SER ALA SER PHE LEU GLU ARG SEQRES 6 A 352 GLN LEU THR ALA GLY VAL PHE GLN PRO LEU ASP LYS SER SEQRES 7 A 352 LYS LEU PRO GLU TRP LYS ASN LEU ASP PRO GLU LEU LEU SEQRES 8 A 352 LYS LEU VAL ALA LYS HIS ASP PRO ASP ASN LYS PHE ALA SEQRES 9 A 352 MET PRO TYR MET TRP ALA THR THR GLY ILE GLY TYR ASN SEQRES 10 A 352 VAL ASP LYS VAL LYS ALA VAL LEU GLY GLU ASN ALA PRO SEQRES 11 A 352 VAL ASP SER TRP ASP LEU ILE LEU LYS PRO GLU ASN LEU SEQRES 12 A 352 GLU LYS LEU LYS SER CYS GLY VAL SER PHE LEU ASP ALA SEQRES 13 A 352 PRO GLU GLU VAL PHE ALA THR VAL LEU ASN TYR LEU GLY SEQRES 14 A 352 LYS ASP PRO ASN SER THR LYS ALA ASP ASP TYR THR GLY SEQRES 15 A 352 PRO ALA THR ASP LEU LEU LEU LYS LEU ARG PRO ASN ILE SEQRES 16 A 352 ARG TYR PHE HIS SER SER GLN TYR ILE ASN ASP LEU ALA SEQRES 17 A 352 ASN GLY ASP ILE CYS VAL ALA ILE GLY TRP ALA GLY ASP SEQRES 18 A 352 VAL TRP GLN ALA SER ASN ARG ALA LYS GLU ALA LYS ASN SEQRES 19 A 352 GLY VAL ASN VAL SER PHE SER ILE PRO LYS GLU GLY ALA SEQRES 20 A 352 MET ALA PHE PHE ASP VAL PHE ALA MET PRO ALA ASP ALA SEQRES 21 A 352 LYS ASN LYS ASP GLU ALA TYR GLN PHE LEU ASN TYR LEU SEQRES 22 A 352 LEU ARG PRO ASP VAL VAL ALA HIS ILE SER ASP HIS VAL SEQRES 23 A 352 PHE TYR ALA ASN ALA ASN LYS ALA ALA THR PRO LEU VAL SEQRES 24 A 352 SER ALA GLU VAL ARG GLU ASN PRO GLY ILE TYR PRO PRO SEQRES 25 A 352 ALA ASP VAL ARG ALA LYS LEU PHE THR LEU LYS VAL GLN SEQRES 26 A 352 ASP PRO LYS ILE ASP ARG VAL ARG THR ARG ALA TRP THR SEQRES 27 A 352 LYS VAL LYS SER GLY LYS LEU GLU HIS HIS HIS HIS HIS SEQRES 28 A 352 HIS HET PUT B 401 18 HET JFN B 402 17 HET JFN B 403 17 HET ONW B 404 34 HET PUT A 401 18 HET ONT A 402 24 HET ONT A 403 24 HET JFN A 404 17 HETNAM PUT 1,4-DIAMINOBUTANE HETNAM JFN (2R)-1-METHOXYPROPAN-2-AMINE HETNAM ONW (2~{R})-1-[(2~{R})-1-(2-METHOXYETHOXY)PROPAN-2- HETNAM 2 ONW YL]OXYPROPAN-2-AMINE HETNAM ONT (2~{S})-1-(2-METHOXYETHOXY)PROPAN-2-AMINE HETSYN PUT PUTRESCINE HETSYN JFN JEFFAMINE HETSYN ONW JEFFAMINE HETSYN ONT JEFFAMINE FORMUL 3 PUT 2(C4 H12 N2) FORMUL 4 JFN 3(C4 H11 N O) FORMUL 6 ONW C9 H21 N O3 FORMUL 8 ONT 2(C6 H15 N O2) FORMUL 11 HOH *570(H2 O) HELIX 1 AA1 ASP B 44 GLY B 54 1 11 HELIX 2 AA2 SER B 64 GLY B 75 1 12 HELIX 3 AA3 SER B 85 ALA B 95 1 11 HELIX 4 AA4 ASP B 102 LEU B 106 5 5 HELIX 5 AA5 GLU B 108 LEU B 112 5 5 HELIX 6 AA6 ASP B 113 LYS B 122 1 10 HELIX 7 AA7 HIS B 123 LYS B 128 5 6 HELIX 8 AA8 VAL B 144 GLY B 152 1 9 HELIX 9 AA9 TRP B 160 LYS B 165 1 6 HELIX 10 AB1 LYS B 165 LYS B 173 1 9 HELIX 11 AB2 ALA B 182 LEU B 194 1 13 HELIX 12 AB3 LYS B 202 GLY B 208 1 7 HELIX 13 AB4 GLY B 208 ARG B 218 1 11 HELIX 14 AB5 PRO B 219 ILE B 221 5 3 HELIX 15 AB6 GLN B 228 ASN B 235 1 8 HELIX 16 AB7 ALA B 245 LYS B 259 1 15 HELIX 17 AB8 ASN B 288 ARG B 301 1 14 HELIX 18 AB9 ARG B 301 PHE B 313 1 13 HELIX 19 AC1 ASN B 318 VAL B 325 5 8 HELIX 20 AC2 SER B 326 GLU B 331 1 6 HELIX 21 AC3 PRO B 338 ALA B 343 1 6 HELIX 22 AC4 ASP B 352 SER B 368 1 17 HELIX 23 AC5 ASP A 44 GLY A 54 1 11 HELIX 24 AC6 SER A 64 GLY A 75 1 12 HELIX 25 AC7 SER A 85 ALA A 95 1 11 HELIX 26 AC8 ASP A 102 LEU A 112 5 11 HELIX 27 AC9 ASP A 113 ALA A 121 1 9 HELIX 28 AD1 LYS A 122 HIS A 123 5 2 HELIX 29 AD2 ASP A 124 LYS A 128 5 5 HELIX 30 AD3 VAL A 144 GLY A 152 1 9 HELIX 31 AD4 TRP A 160 LYS A 165 1 6 HELIX 32 AD5 LYS A 165 LYS A 173 1 9 HELIX 33 AD6 ALA A 182 LEU A 194 1 13 HELIX 34 AD7 LYS A 202 GLY A 208 1 7 HELIX 35 AD8 GLY A 208 ARG A 218 1 11 HELIX 36 AD9 PRO A 219 ILE A 221 5 3 HELIX 37 AE1 GLN A 228 ASN A 235 1 8 HELIX 38 AE2 ALA A 245 LYS A 259 1 15 HELIX 39 AE3 ASN A 288 LEU A 300 1 13 HELIX 40 AE4 ARG A 301 PHE A 313 1 13 HELIX 41 AE5 ALA A 321 VAL A 325 5 5 HELIX 42 AE6 SER A 326 GLU A 331 1 6 HELIX 43 AE7 PRO A 338 ALA A 343 1 6 HELIX 44 AE8 ASP A 352 SER A 368 1 17 SHEET 1 AA1 3 LYS B 56 PHE B 62 0 SHEET 2 AA1 3 THR B 31 TRP B 37 1 N LEU B 32 O VAL B 58 SHEET 3 AA1 3 LEU B 81 VAL B 82 1 O LEU B 81 N TYR B 35 SHEET 1 AA2 5 TYR B 223 PHE B 224 0 SHEET 2 AA2 5 VAL B 177 PHE B 179 1 N PHE B 179 O TYR B 223 SHEET 3 AA2 5 VAL B 240 TRP B 244 1 O ILE B 242 N SER B 178 SHEET 4 AA2 5 MET B 131 ASN B 143 -1 N GLY B 141 O ALA B 241 SHEET 5 AA2 5 ALA B 315 ASN B 316 -1 O ALA B 315 N TRP B 135 SHEET 1 AA3 4 VAL B 264 SER B 267 0 SHEET 2 AA3 4 MET B 131 ASN B 143 -1 N ILE B 140 O SER B 267 SHEET 3 AA3 4 ALA B 273 PHE B 280 -1 O ASP B 278 N TYR B 133 SHEET 4 AA3 4 LEU B 345 PHE B 346 1 O PHE B 346 N ALA B 275 SHEET 1 AA4 3 LYS A 56 PHE A 62 0 SHEET 2 AA4 3 THR A 31 TRP A 37 1 N LEU A 32 O VAL A 58 SHEET 3 AA4 3 LEU A 81 VAL A 82 1 O LEU A 81 N TYR A 35 SHEET 1 AA5 5 TYR A 223 PHE A 224 0 SHEET 2 AA5 5 VAL A 177 PHE A 179 1 N PHE A 179 O TYR A 223 SHEET 3 AA5 5 VAL A 240 TRP A 244 1 O ILE A 242 N SER A 178 SHEET 4 AA5 5 ALA A 130 ASN A 143 -1 N GLY A 141 O ALA A 241 SHEET 5 AA5 5 ALA A 315 ASN A 316 -1 O ALA A 315 N TRP A 135 SHEET 1 AA6 4 VAL A 264 SER A 267 0 SHEET 2 AA6 4 ALA A 130 ASN A 143 -1 N TYR A 142 O SER A 265 SHEET 3 AA6 4 ALA A 273 ALA A 281 -1 O PHE A 280 N MET A 131 SHEET 4 AA6 4 LEU A 345 PHE A 346 1 O PHE A 346 N ALA A 275 SSBOND 1 CYS B 175 CYS B 239 1555 1555 2.06 SSBOND 2 CYS A 175 CYS A 239 1555 1555 2.05 SITE 1 AC1 11 TRP B 37 SER B 38 ASP B 39 TYR B 40 SITE 2 AC1 11 TRP B 244 ASP B 247 PHE B 276 ASP B 278 SITE 3 AC1 11 TYR B 314 HOH B 581 HOH B 629 SITE 1 AC2 1 MET B 73 SITE 1 AC3 1 ASP B 63 SITE 1 AC4 6 GLU B 115 LEU B 116 LEU B 119 ARG B 342 SITE 2 AC4 6 LEU B 345 HOH B 667 SITE 1 AC5 11 TRP A 37 SER A 38 ASP A 39 TYR A 40 SITE 2 AC5 11 TRP A 244 ASP A 247 PHE A 276 ASP A 278 SITE 3 AC5 11 TYR A 314 HOH A 574 HOH A 642 SITE 1 AC6 2 MET A 73 GLY A 96 SITE 1 AC7 4 LEU A 116 LEU A 119 ARG A 342 HOH A 702 SITE 1 AC8 1 SER A 227 CRYST1 70.987 70.987 272.559 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014087 0.008133 0.000000 0.00000 SCALE2 0.000000 0.016266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003669 0.00000