HEADER METAL TRANSPORT 24-MAR-20 6YE4
TITLE STRUCTURE OF EXBB PENTAMER FROM SERRATIA MARCESCENS BY SINGLE PARTICLE
TITLE 2 CRYO ELECTRON MICROSCOPY
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BIOPOLYMER TRANSPORT PROTEIN EXBB;
COMPND 3 CHAIN: A, B, C, D, E;
COMPND 4 SYNONYM: TOL-PAL SYSTEM-ASSOCIATED ACYL-COA THIOESTERASE;
COMPND 5 ENGINEERED: YES;
COMPND 6 OTHER_DETAILS: A 6-HISTIDINE TAG IS PRESENT AT THE C-TERMINUS
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS;
SOURCE 3 ORGANISM_TAXID: 615;
SOURCE 4 GENE: EXBB, FG174_21755, PWN146_03792;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD24
KEYWDS MEMBRANE PROTEIN, IRON UPTAKE, PROTON TRANSFER, TONB COMPLEX, METAL
KEYWDS 2 TRANSPORT
EXPDTA ELECTRON MICROSCOPY
AUTHOR V.BIOU,P.DELEPELAIRE,P.D.COUREUX,M.CHAMI
REVDAT 4 10-JUL-24 6YE4 1 JRNL REMARK
REVDAT 3 04-MAY-22 6YE4 1 JRNL
REVDAT 2 13-OCT-21 6YE4 1 JRNL
REVDAT 1 31-MAR-21 6YE4 0
JRNL AUTH V.BIOU,R.J.D.ADAIXO,M.CHAMI,P.D.COUREUX,B.LAURENT,
JRNL AUTH 2 V.Y.N.ENGUENE,G.C.DE AMORIM,N.IZADI-PRUNEYRE,C.MALOSSE,
JRNL AUTH 3 J.CHAMOT-ROOKE,H.STAHLBERG,P.DELEPELAIRE
JRNL TITL STRUCTURAL AND MOLECULAR DETERMINANTS FOR THE INTERACTION OF
JRNL TITL 2 EXBB FROM SERRATIA MARCESCENS AND HASB, A TONB PARALOG.
JRNL REF COMMUN BIOL V. 5 355 2022
JRNL REFN ESSN 2399-3642
JRNL PMID 35418619
JRNL DOI 10.1038/S42003-022-03306-Y
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH V.BIOU,M.CHAMI,P.D.COUREUX,B.LAURENT,Y.NTSOGO,
REMARK 1 AUTH 2 N.IZADI-PRUNEYRE,C.MALOSSE,J.CHAMOT-ROOKE,H.STAHLBERG,
REMARK 1 AUTH 3 P.DELEPELAIRE
REMARK 1 TITL FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF SERRATIA
REMARK 1 TITL 2 MARCESCENS EXBB: DETERMINANTS OF THE INTERACTION WITH
REMARK 1 TITL 3 HASB/TONB
REMARK 1 REF BIORXIV 2021
REMARK 1 REFN ISSN 2692-8205
REMARK 1 DOI 10.1101/2021.04.21.440815
REMARK 1 REFERENCE 2
REMARK 1 AUTH S.H.SCHERES
REMARK 1 TITL RELION: IMPLEMENTATION OF A BAYESIAN APPROACH TO CRYO-EM
REMARK 1 TITL 2 STRUCTURE DETERMINATION.
REMARK 1 REF J. STRUCT. BIOL. V. 180 519 2012
REMARK 1 REFN ESSN 1095-8657
REMARK 1 PMID 23000701
REMARK 1 DOI 10.1016/J.JSB.2012.09.006
REMARK 2
REMARK 2 RESOLUTION. 3.20 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 SOFTWARE PACKAGES : RELION, SERIALEM, GCTF, RELION, UCSF
REMARK 3 CHIMERA, PHENIX, RELION, RELION, RELION,
REMARK 3 RELION
REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE
REMARK 3
REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT
REMARK 3 PDB ENTRY : 5SV0
REMARK 3 REFINEMENT SPACE : REAL
REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT
REMARK 3 REFINEMENT TARGET : CORRELATION COEFFICIENT
REMARK 3 OVERALL ANISOTROPIC B VALUE : 55.300
REMARK 3
REMARK 3 FITTING PROCEDURE : THE EXBB SEQUENCE FROM S. MARCESCENS WAS
REMARK 3 MODELED BY HOMOLOGY FROM THE 5SV0 MONOMER FROM E. COLI USING
REMARK 3 PHYRE SOFTWARE AND THE PENTAMER WAS GENERATED USING THE 5SV0
REMARK 3 SYMMETRY. REAL SPACE REFINEMENT WAS CARRIED OUT WITH RIGID BODY,
REMARK 3 SIMULATED ANNEALING AND MORPHING STEPS.
REMARK 3
REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS
REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL
REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL
REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.200
REMARK 3 NUMBER OF PARTICLES : 157111
REMARK 3 CTF CORRECTION METHOD : NONE
REMARK 3
REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL
REMARK 3
REMARK 3 OTHER DETAILS: NULL
REMARK 4
REMARK 4 6YE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-20.
REMARK 100 THE DEPOSITION ID IS D_1292107181.
REMARK 245
REMARK 245 EXPERIMENTAL DETAILS
REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE
REMARK 245 SPECIMEN TYPE : NULL
REMARK 245
REMARK 245 ELECTRON MICROSCOPE SAMPLE
REMARK 245 SAMPLE TYPE : PARTICLE
REMARK 245 PARTICLE TYPE : POINT
REMARK 245 NAME OF SAMPLE : HOMOPENTAMER OF EXBB
REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.10
REMARK 245 SAMPLE SUPPORT DETAILS : NULL
REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL
REMARK 245 SAMPLE BUFFER : NULL
REMARK 245 PH : 8.00
REMARK 245 SAMPLE DETAILS : THE EXPRESSED SEQUENCE
REMARK 245 CORRESPONDS TO THE MATURE SEQUENCE AFTER SIGNAL PEPTIDE CLEAVAGE.
REMARK 245
REMARK 245 DATA ACQUISITION
REMARK 245 DATE OF EXPERIMENT : NULL
REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 3122
REMARK 245 TEMPERATURE (KELVIN) : NULL
REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS
REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K)
REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00
REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00
REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL
REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL
REMARK 245 NOMINAL CS : 2.70
REMARK 245 IMAGING MODE : BRIGHT FIELD
REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5595.00
REMARK 245 ILLUMINATION MODE : FLOOD BEAM
REMARK 245 NOMINAL MAGNIFICATION : 165000
REMARK 245 CALIBRATED MAGNIFICATION : NULL
REMARK 245 SOURCE : FIELD EMISSION GUN
REMARK 245 ACCELERATION VOLTAGE (KV) : 300
REMARK 245 IMAGING DETAILS : NULL
REMARK 247
REMARK 247 ELECTRON MICROSCOPY
REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON
REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE
REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES
REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION
REMARK 247 OF THE STRUCTURE FACTORS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 21040 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 54830 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -185.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ALA A 1
REMARK 465 PRO A 2
REMARK 465 ALA A 3
REMARK 465 ALA A 4
REMARK 465 ASN A 5
REMARK 465 PRO A 6
REMARK 465 ALA A 7
REMARK 465 VAL A 8
REMARK 465 THR A 9
REMARK 465 GLU A 10
REMARK 465 SER A 11
REMARK 465 VAL A 12
REMARK 465 ALA A 13
REMARK 465 PRO A 14
REMARK 465 THR A 15
REMARK 465 THR A 16
REMARK 465 ALA A 17
REMARK 465 PRO A 18
REMARK 465 ALA A 19
REMARK 465 PRO A 20
REMARK 465 ALA A 21
REMARK 465 ALA A 22
REMARK 465 ALA A 23
REMARK 465 ALA A 24
REMARK 465 PRO A 25
REMARK 465 GLU A 26
REMARK 465 SER A 27
REMARK 465 ILE A 28
REMARK 465 THR A 29
REMARK 465 PRO A 30
REMARK 465 VAL A 31
REMARK 465 ASN A 32
REMARK 465 PRO A 33
REMARK 465 ALA A 34
REMARK 465 PRO A 35
REMARK 465 THR A 36
REMARK 465 ILE A 37
REMARK 465 GLN A 38
REMARK 465 PRO A 39
REMARK 465 PRO A 40
REMARK 465 GLU A 41
REMARK 465 THR A 42
REMARK 465 ARG A 43
REMARK 465 GLY A 44
REMARK 465 MET A 45
REMARK 465 HIS A 282
REMARK 465 HIS A 283
REMARK 465 HIS A 284
REMARK 465 HIS A 285
REMARK 465 HIS A 286
REMARK 465 HIS A 287
REMARK 465 ALA B 1
REMARK 465 PRO B 2
REMARK 465 ALA B 3
REMARK 465 ALA B 4
REMARK 465 ASN B 5
REMARK 465 PRO B 6
REMARK 465 ALA B 7
REMARK 465 VAL B 8
REMARK 465 THR B 9
REMARK 465 GLU B 10
REMARK 465 SER B 11
REMARK 465 VAL B 12
REMARK 465 ALA B 13
REMARK 465 PRO B 14
REMARK 465 THR B 15
REMARK 465 THR B 16
REMARK 465 ALA B 17
REMARK 465 PRO B 18
REMARK 465 ALA B 19
REMARK 465 PRO B 20
REMARK 465 ALA B 21
REMARK 465 ALA B 22
REMARK 465 ALA B 23
REMARK 465 ALA B 24
REMARK 465 PRO B 25
REMARK 465 GLU B 26
REMARK 465 SER B 27
REMARK 465 ILE B 28
REMARK 465 THR B 29
REMARK 465 PRO B 30
REMARK 465 VAL B 31
REMARK 465 ASN B 32
REMARK 465 PRO B 33
REMARK 465 ALA B 34
REMARK 465 PRO B 35
REMARK 465 THR B 36
REMARK 465 ILE B 37
REMARK 465 GLN B 38
REMARK 465 PRO B 39
REMARK 465 PRO B 40
REMARK 465 GLU B 41
REMARK 465 THR B 42
REMARK 465 ARG B 43
REMARK 465 GLY B 44
REMARK 465 MET B 45
REMARK 465 HIS B 282
REMARK 465 HIS B 283
REMARK 465 HIS B 284
REMARK 465 HIS B 285
REMARK 465 HIS B 286
REMARK 465 HIS B 287
REMARK 465 ALA C 1
REMARK 465 PRO C 2
REMARK 465 ALA C 3
REMARK 465 ALA C 4
REMARK 465 ASN C 5
REMARK 465 PRO C 6
REMARK 465 ALA C 7
REMARK 465 VAL C 8
REMARK 465 THR C 9
REMARK 465 GLU C 10
REMARK 465 SER C 11
REMARK 465 VAL C 12
REMARK 465 ALA C 13
REMARK 465 PRO C 14
REMARK 465 THR C 15
REMARK 465 THR C 16
REMARK 465 ALA C 17
REMARK 465 PRO C 18
REMARK 465 ALA C 19
REMARK 465 PRO C 20
REMARK 465 ALA C 21
REMARK 465 ALA C 22
REMARK 465 ALA C 23
REMARK 465 ALA C 24
REMARK 465 PRO C 25
REMARK 465 GLU C 26
REMARK 465 SER C 27
REMARK 465 ILE C 28
REMARK 465 THR C 29
REMARK 465 PRO C 30
REMARK 465 VAL C 31
REMARK 465 ASN C 32
REMARK 465 PRO C 33
REMARK 465 ALA C 34
REMARK 465 PRO C 35
REMARK 465 THR C 36
REMARK 465 ILE C 37
REMARK 465 GLN C 38
REMARK 465 PRO C 39
REMARK 465 PRO C 40
REMARK 465 GLU C 41
REMARK 465 THR C 42
REMARK 465 ARG C 43
REMARK 465 GLY C 44
REMARK 465 MET C 45
REMARK 465 HIS C 282
REMARK 465 HIS C 283
REMARK 465 HIS C 284
REMARK 465 HIS C 285
REMARK 465 HIS C 286
REMARK 465 HIS C 287
REMARK 465 ALA D 1
REMARK 465 PRO D 2
REMARK 465 ALA D 3
REMARK 465 ALA D 4
REMARK 465 ASN D 5
REMARK 465 PRO D 6
REMARK 465 ALA D 7
REMARK 465 VAL D 8
REMARK 465 THR D 9
REMARK 465 GLU D 10
REMARK 465 SER D 11
REMARK 465 VAL D 12
REMARK 465 ALA D 13
REMARK 465 PRO D 14
REMARK 465 THR D 15
REMARK 465 THR D 16
REMARK 465 ALA D 17
REMARK 465 PRO D 18
REMARK 465 ALA D 19
REMARK 465 PRO D 20
REMARK 465 ALA D 21
REMARK 465 ALA D 22
REMARK 465 ALA D 23
REMARK 465 ALA D 24
REMARK 465 PRO D 25
REMARK 465 GLU D 26
REMARK 465 SER D 27
REMARK 465 ILE D 28
REMARK 465 THR D 29
REMARK 465 PRO D 30
REMARK 465 VAL D 31
REMARK 465 ASN D 32
REMARK 465 PRO D 33
REMARK 465 ALA D 34
REMARK 465 PRO D 35
REMARK 465 THR D 36
REMARK 465 ILE D 37
REMARK 465 GLN D 38
REMARK 465 PRO D 39
REMARK 465 PRO D 40
REMARK 465 GLU D 41
REMARK 465 THR D 42
REMARK 465 ARG D 43
REMARK 465 GLY D 44
REMARK 465 MET D 45
REMARK 465 HIS D 282
REMARK 465 HIS D 283
REMARK 465 HIS D 284
REMARK 465 HIS D 285
REMARK 465 HIS D 286
REMARK 465 HIS D 287
REMARK 465 ALA E 1
REMARK 465 PRO E 2
REMARK 465 ALA E 3
REMARK 465 ALA E 4
REMARK 465 ASN E 5
REMARK 465 PRO E 6
REMARK 465 ALA E 7
REMARK 465 VAL E 8
REMARK 465 THR E 9
REMARK 465 GLU E 10
REMARK 465 SER E 11
REMARK 465 VAL E 12
REMARK 465 ALA E 13
REMARK 465 PRO E 14
REMARK 465 THR E 15
REMARK 465 THR E 16
REMARK 465 ALA E 17
REMARK 465 PRO E 18
REMARK 465 ALA E 19
REMARK 465 PRO E 20
REMARK 465 ALA E 21
REMARK 465 ALA E 22
REMARK 465 ALA E 23
REMARK 465 ALA E 24
REMARK 465 PRO E 25
REMARK 465 GLU E 26
REMARK 465 SER E 27
REMARK 465 ILE E 28
REMARK 465 THR E 29
REMARK 465 PRO E 30
REMARK 465 VAL E 31
REMARK 465 ASN E 32
REMARK 465 PRO E 33
REMARK 465 ALA E 34
REMARK 465 PRO E 35
REMARK 465 THR E 36
REMARK 465 ILE E 37
REMARK 465 GLN E 38
REMARK 465 PRO E 39
REMARK 465 PRO E 40
REMARK 465 GLU E 41
REMARK 465 THR E 42
REMARK 465 ARG E 43
REMARK 465 GLY E 44
REMARK 465 MET E 45
REMARK 465 HIS E 282
REMARK 465 HIS E 283
REMARK 465 HIS E 284
REMARK 465 HIS E 285
REMARK 465 HIS E 286
REMARK 465 HIS E 287
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ALA A 228 CB
REMARK 470 ALA B 228 CB
REMARK 470 ALA C 228 CB
REMARK 470 ALA D 228 CB
REMARK 470 ALA E 228 CB
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 VAL A 229 CB VAL A 229 CG2 -0.135
REMARK 500 VAL A 253 CB VAL A 253 CG1 -0.130
REMARK 500 VAL B 229 CB VAL B 229 CG2 -0.137
REMARK 500 VAL B 253 CB VAL B 253 CG1 -0.129
REMARK 500 VAL C 229 CB VAL C 229 CG2 -0.136
REMARK 500 VAL C 253 CB VAL C 253 CG1 -0.130
REMARK 500 VAL D 229 CB VAL D 229 CG2 -0.135
REMARK 500 VAL D 253 CB VAL D 253 CG1 -0.131
REMARK 500 VAL E 229 CB VAL E 229 CG2 -0.136
REMARK 500 VAL E 253 CB VAL E 253 CG1 -0.132
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLU A 118 50.66 -92.87
REMARK 500 GLU B 118 50.80 -93.03
REMARK 500 GLU C 118 50.88 -92.98
REMARK 500 GLU D 118 50.63 -92.85
REMARK 500 GLU E 118 50.75 -92.99
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 PGT A 301
REMARK 610 PGT B 301
REMARK 610 PGT C 301
REMARK 610 PGT D 301
REMARK 610 PGT E 301
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PGT A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PGT B 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PGT C 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PGT D 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PGT E 301
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: EMD-10789 RELATED DB: EMDB
REMARK 900 STRUCTURE OF EXBB PENTAMER FROM SERRATIA MARCESCENS BY SINGLE
REMARK 900 PARTICLE CRYO ELECTRON MICROSCOPY
DBREF1 6YE4 A 1 281 UNP A0A1C3HJ46_SERMA
DBREF2 6YE4 A A0A1C3HJ46 45 325
DBREF1 6YE4 B 1 281 UNP A0A1C3HJ46_SERMA
DBREF2 6YE4 B A0A1C3HJ46 45 325
DBREF1 6YE4 C 1 281 UNP A0A1C3HJ46_SERMA
DBREF2 6YE4 C A0A1C3HJ46 45 325
DBREF1 6YE4 D 1 281 UNP A0A1C3HJ46_SERMA
DBREF2 6YE4 D A0A1C3HJ46 45 325
DBREF1 6YE4 E 1 281 UNP A0A1C3HJ46_SERMA
DBREF2 6YE4 E A0A1C3HJ46 45 325
SEQADV 6YE4 HIS A 282 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS A 283 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS A 284 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS A 285 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS A 286 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS A 287 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS B 282 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS B 283 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS B 284 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS B 285 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS B 286 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS B 287 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS C 282 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS C 283 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS C 284 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS C 285 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS C 286 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS C 287 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS D 282 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS D 283 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS D 284 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS D 285 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS D 286 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS D 287 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS E 282 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS E 283 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS E 284 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS E 285 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS E 286 UNP A0A1C3HJ4 EXPRESSION TAG
SEQADV 6YE4 HIS E 287 UNP A0A1C3HJ4 EXPRESSION TAG
SEQRES 1 A 287 ALA PRO ALA ALA ASN PRO ALA VAL THR GLU SER VAL ALA
SEQRES 2 A 287 PRO THR THR ALA PRO ALA PRO ALA ALA ALA ALA PRO GLU
SEQRES 3 A 287 SER ILE THR PRO VAL ASN PRO ALA PRO THR ILE GLN PRO
SEQRES 4 A 287 PRO GLU THR ARG GLY MET ASP LEU SER ILE TRP GLY MET
SEQRES 5 A 287 TYR GLN HIS ALA ASP ALA VAL VAL LYS ALA VAL MET ILE
SEQRES 6 A 287 GLY LEU VAL LEU ALA SER ILE VAL THR TRP THR ILE LEU
SEQRES 7 A 287 PHE ALA LYS GLY SER GLU LEU LEU ARG ALA LYS ARG ARG
SEQRES 8 A 287 LEU ARG ARG GLU GLN LEU ALA LEU ALA GLU ALA ARG SER
SEQRES 9 A 287 LEU ASP GLU ALA SER GLU LEU ALA GLN ASN PHE SER PRO
SEQRES 10 A 287 GLU SER VAL SER ALA VAL LEU LEU ASN ASP ALA GLN ASN
SEQRES 11 A 287 GLU LEU GLU LEU SER ALA GLU SER ASN ASP ASN ASN GLY
SEQRES 12 A 287 ILE LYS GLU ARG THR GLY PHE ARG LEU GLU ARG ARG VAL
SEQRES 13 A 287 ALA ALA TYR SER ARG ASN MET GLY ARG GLY ASN GLY PHE
SEQRES 14 A 287 LEU ALA THR ILE GLY ALA ILE SER PRO PHE VAL GLY LEU
SEQRES 15 A 287 PHE GLY THR VAL TRP GLY ILE MET ASN SER PHE ILE GLY
SEQRES 16 A 287 ILE ALA HIS SER GLN THR THR ASN LEU ALA VAL VAL ALA
SEQRES 17 A 287 PRO GLY ILE ALA GLU ALA LEU LEU ALA THR ALA MET GLY
SEQRES 18 A 287 LEU VAL ALA ALA ILE PRO ALA VAL VAL ILE TYR ASN ILE
SEQRES 19 A 287 PHE ALA ARG VAL ILE SER GLY HIS ARG ALA GLN VAL GLY
SEQRES 20 A 287 ASP VAL ALA ALA GLN VAL LEU LEU LEU GLN GLY ARG ASP
SEQRES 21 A 287 LEU ASP LEU ALA ALA THR ALA GLU ALA LYS ARG SER GLN
SEQRES 22 A 287 HIS ALA HIS GLN LEU ARG ALA GLY HIS HIS HIS HIS HIS
SEQRES 23 A 287 HIS
SEQRES 1 B 287 ALA PRO ALA ALA ASN PRO ALA VAL THR GLU SER VAL ALA
SEQRES 2 B 287 PRO THR THR ALA PRO ALA PRO ALA ALA ALA ALA PRO GLU
SEQRES 3 B 287 SER ILE THR PRO VAL ASN PRO ALA PRO THR ILE GLN PRO
SEQRES 4 B 287 PRO GLU THR ARG GLY MET ASP LEU SER ILE TRP GLY MET
SEQRES 5 B 287 TYR GLN HIS ALA ASP ALA VAL VAL LYS ALA VAL MET ILE
SEQRES 6 B 287 GLY LEU VAL LEU ALA SER ILE VAL THR TRP THR ILE LEU
SEQRES 7 B 287 PHE ALA LYS GLY SER GLU LEU LEU ARG ALA LYS ARG ARG
SEQRES 8 B 287 LEU ARG ARG GLU GLN LEU ALA LEU ALA GLU ALA ARG SER
SEQRES 9 B 287 LEU ASP GLU ALA SER GLU LEU ALA GLN ASN PHE SER PRO
SEQRES 10 B 287 GLU SER VAL SER ALA VAL LEU LEU ASN ASP ALA GLN ASN
SEQRES 11 B 287 GLU LEU GLU LEU SER ALA GLU SER ASN ASP ASN ASN GLY
SEQRES 12 B 287 ILE LYS GLU ARG THR GLY PHE ARG LEU GLU ARG ARG VAL
SEQRES 13 B 287 ALA ALA TYR SER ARG ASN MET GLY ARG GLY ASN GLY PHE
SEQRES 14 B 287 LEU ALA THR ILE GLY ALA ILE SER PRO PHE VAL GLY LEU
SEQRES 15 B 287 PHE GLY THR VAL TRP GLY ILE MET ASN SER PHE ILE GLY
SEQRES 16 B 287 ILE ALA HIS SER GLN THR THR ASN LEU ALA VAL VAL ALA
SEQRES 17 B 287 PRO GLY ILE ALA GLU ALA LEU LEU ALA THR ALA MET GLY
SEQRES 18 B 287 LEU VAL ALA ALA ILE PRO ALA VAL VAL ILE TYR ASN ILE
SEQRES 19 B 287 PHE ALA ARG VAL ILE SER GLY HIS ARG ALA GLN VAL GLY
SEQRES 20 B 287 ASP VAL ALA ALA GLN VAL LEU LEU LEU GLN GLY ARG ASP
SEQRES 21 B 287 LEU ASP LEU ALA ALA THR ALA GLU ALA LYS ARG SER GLN
SEQRES 22 B 287 HIS ALA HIS GLN LEU ARG ALA GLY HIS HIS HIS HIS HIS
SEQRES 23 B 287 HIS
SEQRES 1 C 287 ALA PRO ALA ALA ASN PRO ALA VAL THR GLU SER VAL ALA
SEQRES 2 C 287 PRO THR THR ALA PRO ALA PRO ALA ALA ALA ALA PRO GLU
SEQRES 3 C 287 SER ILE THR PRO VAL ASN PRO ALA PRO THR ILE GLN PRO
SEQRES 4 C 287 PRO GLU THR ARG GLY MET ASP LEU SER ILE TRP GLY MET
SEQRES 5 C 287 TYR GLN HIS ALA ASP ALA VAL VAL LYS ALA VAL MET ILE
SEQRES 6 C 287 GLY LEU VAL LEU ALA SER ILE VAL THR TRP THR ILE LEU
SEQRES 7 C 287 PHE ALA LYS GLY SER GLU LEU LEU ARG ALA LYS ARG ARG
SEQRES 8 C 287 LEU ARG ARG GLU GLN LEU ALA LEU ALA GLU ALA ARG SER
SEQRES 9 C 287 LEU ASP GLU ALA SER GLU LEU ALA GLN ASN PHE SER PRO
SEQRES 10 C 287 GLU SER VAL SER ALA VAL LEU LEU ASN ASP ALA GLN ASN
SEQRES 11 C 287 GLU LEU GLU LEU SER ALA GLU SER ASN ASP ASN ASN GLY
SEQRES 12 C 287 ILE LYS GLU ARG THR GLY PHE ARG LEU GLU ARG ARG VAL
SEQRES 13 C 287 ALA ALA TYR SER ARG ASN MET GLY ARG GLY ASN GLY PHE
SEQRES 14 C 287 LEU ALA THR ILE GLY ALA ILE SER PRO PHE VAL GLY LEU
SEQRES 15 C 287 PHE GLY THR VAL TRP GLY ILE MET ASN SER PHE ILE GLY
SEQRES 16 C 287 ILE ALA HIS SER GLN THR THR ASN LEU ALA VAL VAL ALA
SEQRES 17 C 287 PRO GLY ILE ALA GLU ALA LEU LEU ALA THR ALA MET GLY
SEQRES 18 C 287 LEU VAL ALA ALA ILE PRO ALA VAL VAL ILE TYR ASN ILE
SEQRES 19 C 287 PHE ALA ARG VAL ILE SER GLY HIS ARG ALA GLN VAL GLY
SEQRES 20 C 287 ASP VAL ALA ALA GLN VAL LEU LEU LEU GLN GLY ARG ASP
SEQRES 21 C 287 LEU ASP LEU ALA ALA THR ALA GLU ALA LYS ARG SER GLN
SEQRES 22 C 287 HIS ALA HIS GLN LEU ARG ALA GLY HIS HIS HIS HIS HIS
SEQRES 23 C 287 HIS
SEQRES 1 D 287 ALA PRO ALA ALA ASN PRO ALA VAL THR GLU SER VAL ALA
SEQRES 2 D 287 PRO THR THR ALA PRO ALA PRO ALA ALA ALA ALA PRO GLU
SEQRES 3 D 287 SER ILE THR PRO VAL ASN PRO ALA PRO THR ILE GLN PRO
SEQRES 4 D 287 PRO GLU THR ARG GLY MET ASP LEU SER ILE TRP GLY MET
SEQRES 5 D 287 TYR GLN HIS ALA ASP ALA VAL VAL LYS ALA VAL MET ILE
SEQRES 6 D 287 GLY LEU VAL LEU ALA SER ILE VAL THR TRP THR ILE LEU
SEQRES 7 D 287 PHE ALA LYS GLY SER GLU LEU LEU ARG ALA LYS ARG ARG
SEQRES 8 D 287 LEU ARG ARG GLU GLN LEU ALA LEU ALA GLU ALA ARG SER
SEQRES 9 D 287 LEU ASP GLU ALA SER GLU LEU ALA GLN ASN PHE SER PRO
SEQRES 10 D 287 GLU SER VAL SER ALA VAL LEU LEU ASN ASP ALA GLN ASN
SEQRES 11 D 287 GLU LEU GLU LEU SER ALA GLU SER ASN ASP ASN ASN GLY
SEQRES 12 D 287 ILE LYS GLU ARG THR GLY PHE ARG LEU GLU ARG ARG VAL
SEQRES 13 D 287 ALA ALA TYR SER ARG ASN MET GLY ARG GLY ASN GLY PHE
SEQRES 14 D 287 LEU ALA THR ILE GLY ALA ILE SER PRO PHE VAL GLY LEU
SEQRES 15 D 287 PHE GLY THR VAL TRP GLY ILE MET ASN SER PHE ILE GLY
SEQRES 16 D 287 ILE ALA HIS SER GLN THR THR ASN LEU ALA VAL VAL ALA
SEQRES 17 D 287 PRO GLY ILE ALA GLU ALA LEU LEU ALA THR ALA MET GLY
SEQRES 18 D 287 LEU VAL ALA ALA ILE PRO ALA VAL VAL ILE TYR ASN ILE
SEQRES 19 D 287 PHE ALA ARG VAL ILE SER GLY HIS ARG ALA GLN VAL GLY
SEQRES 20 D 287 ASP VAL ALA ALA GLN VAL LEU LEU LEU GLN GLY ARG ASP
SEQRES 21 D 287 LEU ASP LEU ALA ALA THR ALA GLU ALA LYS ARG SER GLN
SEQRES 22 D 287 HIS ALA HIS GLN LEU ARG ALA GLY HIS HIS HIS HIS HIS
SEQRES 23 D 287 HIS
SEQRES 1 E 287 ALA PRO ALA ALA ASN PRO ALA VAL THR GLU SER VAL ALA
SEQRES 2 E 287 PRO THR THR ALA PRO ALA PRO ALA ALA ALA ALA PRO GLU
SEQRES 3 E 287 SER ILE THR PRO VAL ASN PRO ALA PRO THR ILE GLN PRO
SEQRES 4 E 287 PRO GLU THR ARG GLY MET ASP LEU SER ILE TRP GLY MET
SEQRES 5 E 287 TYR GLN HIS ALA ASP ALA VAL VAL LYS ALA VAL MET ILE
SEQRES 6 E 287 GLY LEU VAL LEU ALA SER ILE VAL THR TRP THR ILE LEU
SEQRES 7 E 287 PHE ALA LYS GLY SER GLU LEU LEU ARG ALA LYS ARG ARG
SEQRES 8 E 287 LEU ARG ARG GLU GLN LEU ALA LEU ALA GLU ALA ARG SER
SEQRES 9 E 287 LEU ASP GLU ALA SER GLU LEU ALA GLN ASN PHE SER PRO
SEQRES 10 E 287 GLU SER VAL SER ALA VAL LEU LEU ASN ASP ALA GLN ASN
SEQRES 11 E 287 GLU LEU GLU LEU SER ALA GLU SER ASN ASP ASN ASN GLY
SEQRES 12 E 287 ILE LYS GLU ARG THR GLY PHE ARG LEU GLU ARG ARG VAL
SEQRES 13 E 287 ALA ALA TYR SER ARG ASN MET GLY ARG GLY ASN GLY PHE
SEQRES 14 E 287 LEU ALA THR ILE GLY ALA ILE SER PRO PHE VAL GLY LEU
SEQRES 15 E 287 PHE GLY THR VAL TRP GLY ILE MET ASN SER PHE ILE GLY
SEQRES 16 E 287 ILE ALA HIS SER GLN THR THR ASN LEU ALA VAL VAL ALA
SEQRES 17 E 287 PRO GLY ILE ALA GLU ALA LEU LEU ALA THR ALA MET GLY
SEQRES 18 E 287 LEU VAL ALA ALA ILE PRO ALA VAL VAL ILE TYR ASN ILE
SEQRES 19 E 287 PHE ALA ARG VAL ILE SER GLY HIS ARG ALA GLN VAL GLY
SEQRES 20 E 287 ASP VAL ALA ALA GLN VAL LEU LEU LEU GLN GLY ARG ASP
SEQRES 21 E 287 LEU ASP LEU ALA ALA THR ALA GLU ALA LYS ARG SER GLN
SEQRES 22 E 287 HIS ALA HIS GLN LEU ARG ALA GLY HIS HIS HIS HIS HIS
SEQRES 23 E 287 HIS
HET PGT A 301 44
HET PGT B 301 44
HET PGT C 301 44
HET PGT D 301 44
HET PGT E 301 44
HETNAM PGT (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)
HETNAM 2 PGT PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE
HETSYN PGT PHOSPHATIDYLGLYCEROL; 1-PALMITOYL-2-OLEOYL-SN-GLYCERO-
HETSYN 2 PGT 3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT)
FORMUL 6 PGT 5(C40 H79 O10 P)
HELIX 1 AA1 SER A 48 HIS A 55 1 8
HELIX 2 AA2 ASP A 57 ALA A 100 1 44
HELIX 3 AA3 SER A 104 GLN A 113 1 10
HELIX 4 AA4 VAL A 120 SER A 135 1 16
HELIX 5 AA5 ASP A 140 GLY A 164 1 25
HELIX 6 AA6 GLY A 166 SER A 199 1 34
HELIX 7 AA7 ASN A 203 ALA A 280 1 78
HELIX 8 AA8 SER B 48 HIS B 55 1 8
HELIX 9 AA9 ASP B 57 ALA B 100 1 44
HELIX 10 AB1 SER B 104 GLN B 113 1 10
HELIX 11 AB2 VAL B 120 SER B 135 1 16
HELIX 12 AB3 ASP B 140 GLY B 164 1 25
HELIX 13 AB4 GLY B 166 SER B 199 1 34
HELIX 14 AB5 ASN B 203 ALA B 280 1 78
HELIX 15 AB6 SER C 48 HIS C 55 1 8
HELIX 16 AB7 ASP C 57 ALA C 100 1 44
HELIX 17 AB8 SER C 104 GLN C 113 1 10
HELIX 18 AB9 VAL C 120 SER C 135 1 16
HELIX 19 AC1 ASP C 140 GLY C 164 1 25
HELIX 20 AC2 GLY C 166 SER C 199 1 34
HELIX 21 AC3 ASN C 203 ALA C 280 1 78
HELIX 22 AC4 SER D 48 HIS D 55 1 8
HELIX 23 AC5 ASP D 57 ALA D 100 1 44
HELIX 24 AC6 SER D 104 ALA D 112 1 9
HELIX 25 AC7 VAL D 120 SER D 135 1 16
HELIX 26 AC8 ASP D 140 GLY D 164 1 25
HELIX 27 AC9 GLY D 166 SER D 199 1 34
HELIX 28 AD1 ASN D 203 ALA D 280 1 78
HELIX 29 AD2 SER E 48 HIS E 55 1 8
HELIX 30 AD3 ASP E 57 ALA E 100 1 44
HELIX 31 AD4 SER E 104 ALA E 112 1 9
HELIX 32 AD5 VAL E 120 SER E 135 1 16
HELIX 33 AD6 ASP E 140 GLY E 164 1 25
HELIX 34 AD7 GLY E 166 SER E 199 1 34
HELIX 35 AD8 ASN E 203 ALA E 280 1 78
SITE 1 AC1 8 ARG A 165 GLY A 168 THR A 172 ILE A 173
SITE 2 AC1 8 TRP B 75 ILE B 234 ARG B 237 VAL B 238
SITE 1 AC2 7 ARG B 165 THR B 172 ILE B 173 TRP C 75
SITE 2 AC2 7 ILE C 234 ARG C 237 VAL C 238
SITE 1 AC3 9 ARG C 161 ARG C 165 THR C 172 ILE C 173
SITE 2 AC3 9 ILE C 176 TRP D 75 ILE D 234 ARG D 237
SITE 3 AC3 9 VAL D 238
SITE 1 AC4 8 ARG D 165 GLY D 168 THR D 172 ILE D 173
SITE 2 AC4 8 TRP E 75 ILE E 234 ARG E 237 VAL E 238
SITE 1 AC5 9 TRP A 75 ILE A 234 ARG A 237 VAL A 238
SITE 2 AC5 9 ARG E 161 ARG E 165 GLY E 168 THR E 172
SITE 3 AC5 9 ILE E 173
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000