HEADER TRANSPORT PROTEIN 24-MAR-20 6YED TITLE E.COLI'S PUTRESCINE RECEPTOR POTF IN ITS OPEN APO STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTRESCINE-BINDING PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: POTF, B0854, JW0838; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET21B(+) KEYWDS PERIPLASMIC BINDING PROTEIN, E.COLI, OPEN APO, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SHANMUGARATNAM,P.KROEGER,B.HOCKER REVDAT 3 24-JAN-24 6YED 1 REMARK REVDAT 2 19-MAY-21 6YED 1 JRNL REVDAT 1 20-JAN-21 6YED 0 JRNL AUTH P.KROGER,S.SHANMUGARATNAM,N.FERRUZ,K.SCHWEIMER,B.HOCKER JRNL TITL A COMPREHENSIVE BINDING STUDY ILLUSTRATES LIGAND RECOGNITION JRNL TITL 2 IN THE PERIPLASMIC BINDING PROTEIN POTF. JRNL REF STRUCTURE V. 29 433 2021 JRNL REFN ISSN 0969-2126 JRNL PMID 33406388 JRNL DOI 10.1016/J.STR.2020.12.005 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 67443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.710 REMARK 3 FREE R VALUE TEST SET COUNT : 3852 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9000 - 6.6200 1.00 2276 121 0.1569 0.1752 REMARK 3 2 6.6100 - 5.2500 1.00 2272 140 0.1938 0.2504 REMARK 3 3 5.2500 - 4.5900 1.00 2291 138 0.1523 0.2008 REMARK 3 4 4.5900 - 4.1700 1.00 2258 154 0.1624 0.2032 REMARK 3 5 4.1700 - 3.8700 1.00 2250 133 0.1844 0.2133 REMARK 3 6 3.8700 - 3.6400 1.00 2275 154 0.2025 0.2534 REMARK 3 7 3.6400 - 3.4600 1.00 2244 124 0.2066 0.2581 REMARK 3 8 3.4600 - 3.3100 1.00 2299 135 0.2256 0.2882 REMARK 3 9 3.3100 - 3.1800 1.00 2297 137 0.2211 0.2796 REMARK 3 10 3.1800 - 3.0700 1.00 2282 130 0.2497 0.2858 REMARK 3 11 3.0700 - 2.9800 1.00 2207 161 0.2636 0.3191 REMARK 3 12 2.9800 - 2.8900 1.00 2322 109 0.2726 0.3292 REMARK 3 13 2.8900 - 2.8200 1.00 2244 149 0.2605 0.3358 REMARK 3 14 2.8100 - 2.7500 1.00 2260 156 0.2736 0.3080 REMARK 3 15 2.7500 - 2.6800 1.00 2293 129 0.2726 0.4077 REMARK 3 16 2.6800 - 2.6300 1.00 2301 132 0.2730 0.3298 REMARK 3 17 2.6300 - 2.5700 1.00 2209 153 0.2880 0.2939 REMARK 3 18 2.5700 - 2.5300 1.00 2276 138 0.2736 0.3613 REMARK 3 19 2.5300 - 2.4800 1.00 2344 119 0.2737 0.3204 REMARK 3 20 2.4800 - 2.4400 1.00 2184 149 0.2730 0.2576 REMARK 3 21 2.4400 - 2.4000 1.00 2312 147 0.2803 0.2881 REMARK 3 22 2.4000 - 2.3600 1.00 2295 135 0.2969 0.3676 REMARK 3 23 2.3600 - 2.3300 1.00 2228 132 0.3136 0.3341 REMARK 3 24 2.3300 - 2.2900 1.00 2354 132 0.3205 0.3906 REMARK 3 25 2.2900 - 2.2600 1.00 2216 154 0.3315 0.3706 REMARK 3 26 2.2600 - 2.2300 1.00 2248 108 0.3260 0.3380 REMARK 3 27 2.2300 - 2.2100 1.00 2284 145 0.3396 0.3773 REMARK 3 28 2.2100 - 2.1800 0.99 2270 138 0.3106 0.3314 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.309 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.627 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5613 REMARK 3 ANGLE : 0.496 7594 REMARK 3 CHIRALITY : 0.043 830 REMARK 3 PLANARITY : 0.003 977 REMARK 3 DIHEDRAL : 16.588 776 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 29 THROUGH 369) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5322 -11.1388 38.4121 REMARK 3 T TENSOR REMARK 3 T11: 0.2532 T22: 0.1051 REMARK 3 T33: 0.2035 T12: -0.0070 REMARK 3 T13: -0.0107 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 1.2844 L22: 2.4049 REMARK 3 L33: 0.4835 L12: 0.2287 REMARK 3 L13: 0.0679 L23: 0.2426 REMARK 3 S TENSOR REMARK 3 S11: -0.0579 S12: 0.0843 S13: -0.0224 REMARK 3 S21: -0.1720 S22: 0.0412 S23: 0.0567 REMARK 3 S31: -0.0146 S32: -0.0847 S33: -0.0020 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 29 THROUGH 369) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3895 -21.5255 77.0513 REMARK 3 T TENSOR REMARK 3 T11: 0.2273 T22: 0.7825 REMARK 3 T33: 0.3038 T12: 0.0771 REMARK 3 T13: 0.0496 T23: 0.1466 REMARK 3 L TENSOR REMARK 3 L11: 0.3503 L22: 1.5582 REMARK 3 L33: 0.8908 L12: -0.3170 REMARK 3 L13: 0.5465 L23: -0.5822 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: -0.2570 S13: 0.0528 REMARK 3 S21: -0.0142 S22: -0.1514 S23: -0.1981 REMARK 3 S31: -0.0652 S32: -0.1180 S33: -0.0132 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107499. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DCM SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20180126 REMARK 200 DATA SCALING SOFTWARE : XDS 20180126, XSCALE 20180126 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67443 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 45.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.15650 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.96980 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: 1A99 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 7.2, 0.2 M NACL, 35% PEG REMARK 280 3000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.72500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 27 REMARK 465 GLU A 28 REMARK 465 LYS A 370 REMARK 465 LEU A 371 REMARK 465 GLU A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 ALA B 27 REMARK 465 GLU B 28 REMARK 465 LYS B 370 REMARK 465 LEU B 371 REMARK 465 GLU B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 465 HIS B 377 REMARK 465 HIS B 378 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 184 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 124 86.44 -151.71 REMARK 500 TYR A 133 -69.32 -105.54 REMARK 500 ASN A 199 56.43 -118.75 REMARK 500 SER A 227 -32.87 -149.11 REMARK 500 ASN A 288 68.54 -116.10 REMARK 500 VAL B 83 79.09 -118.56 REMARK 500 LEU B 106 74.69 -116.47 REMARK 500 ASP B 126 13.90 59.84 REMARK 500 TYR B 133 -70.53 -96.19 REMARK 500 ASP B 181 47.07 -88.59 REMARK 500 ASN B 199 56.10 -111.94 REMARK 500 SER B 227 -16.54 -147.51 REMARK 500 ASN B 288 78.81 -113.12 REMARK 500 ILE B 335 -52.89 -120.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6YE0 RELATED DB: PDB REMARK 900 6YE0 CONTAINS THE SAME PROTEIN COMPLEXED WITH PUTRESCINE REMARK 900 RELATED ID: 6YE6 RELATED DB: PDB REMARK 900 6YE6 CONTAINS THE SAME PROTEIN COMPLEXED WITH AGMATINE REMARK 900 RELATED ID: 6YE7 RELATED DB: PDB REMARK 900 6YE7 CONTAINS THE SAME PROTEIN COMPLEXED WITH CADAVERINE REMARK 900 RELATED ID: 6YE8 RELATED DB: PDB REMARK 900 6YE8 CONTAINS THE SAME PROTEIN COMPLEXED WITH SPERMIDINE REMARK 900 RELATED ID: 6YEC RELATED DB: PDB REMARK 900 6YEC CONTAINS THE SAME PROTEIN COMPLEXED WITH SPERMINE REMARK 900 RELATED ID: 6YEB RELATED DB: PDB REMARK 900 6YEB CONTAINS THE SAME PROTEIN IN ITS CLOSED APO STATE DBREF 6YED A 27 370 UNP P31133 POTF_ECOLI 27 370 DBREF 6YED B 27 370 UNP P31133 POTF_ECOLI 27 370 SEQADV 6YED LEU A 371 UNP P31133 EXPRESSION TAG SEQADV 6YED GLU A 372 UNP P31133 EXPRESSION TAG SEQADV 6YED HIS A 373 UNP P31133 EXPRESSION TAG SEQADV 6YED HIS A 374 UNP P31133 EXPRESSION TAG SEQADV 6YED HIS A 375 UNP P31133 EXPRESSION TAG SEQADV 6YED HIS A 376 UNP P31133 EXPRESSION TAG SEQADV 6YED HIS A 377 UNP P31133 EXPRESSION TAG SEQADV 6YED HIS A 378 UNP P31133 EXPRESSION TAG SEQADV 6YED LEU B 371 UNP P31133 EXPRESSION TAG SEQADV 6YED GLU B 372 UNP P31133 EXPRESSION TAG SEQADV 6YED HIS B 373 UNP P31133 EXPRESSION TAG SEQADV 6YED HIS B 374 UNP P31133 EXPRESSION TAG SEQADV 6YED HIS B 375 UNP P31133 EXPRESSION TAG SEQADV 6YED HIS B 376 UNP P31133 EXPRESSION TAG SEQADV 6YED HIS B 377 UNP P31133 EXPRESSION TAG SEQADV 6YED HIS B 378 UNP P31133 EXPRESSION TAG SEQRES 1 A 352 ALA GLU GLN LYS THR LEU HIS ILE TYR ASN TRP SER ASP SEQRES 2 A 352 TYR ILE ALA PRO ASP THR VAL ALA ASN PHE GLU LYS GLU SEQRES 3 A 352 THR GLY ILE LYS VAL VAL TYR ASP VAL PHE ASP SER ASN SEQRES 4 A 352 GLU VAL LEU GLU GLY LYS LEU MET ALA GLY SER THR GLY SEQRES 5 A 352 PHE ASP LEU VAL VAL PRO SER ALA SER PHE LEU GLU ARG SEQRES 6 A 352 GLN LEU THR ALA GLY VAL PHE GLN PRO LEU ASP LYS SER SEQRES 7 A 352 LYS LEU PRO GLU TRP LYS ASN LEU ASP PRO GLU LEU LEU SEQRES 8 A 352 LYS LEU VAL ALA LYS HIS ASP PRO ASP ASN LYS PHE ALA SEQRES 9 A 352 MET PRO TYR MET TRP ALA THR THR GLY ILE GLY TYR ASN SEQRES 10 A 352 VAL ASP LYS VAL LYS ALA VAL LEU GLY GLU ASN ALA PRO SEQRES 11 A 352 VAL ASP SER TRP ASP LEU ILE LEU LYS PRO GLU ASN LEU SEQRES 12 A 352 GLU LYS LEU LYS SER CYS GLY VAL SER PHE LEU ASP ALA SEQRES 13 A 352 PRO GLU GLU VAL PHE ALA THR VAL LEU ASN TYR LEU GLY SEQRES 14 A 352 LYS ASP PRO ASN SER THR LYS ALA ASP ASP TYR THR GLY SEQRES 15 A 352 PRO ALA THR ASP LEU LEU LEU LYS LEU ARG PRO ASN ILE SEQRES 16 A 352 ARG TYR PHE HIS SER SER GLN TYR ILE ASN ASP LEU ALA SEQRES 17 A 352 ASN GLY ASP ILE CYS VAL ALA ILE GLY TRP ALA GLY ASP SEQRES 18 A 352 VAL TRP GLN ALA SER ASN ARG ALA LYS GLU ALA LYS ASN SEQRES 19 A 352 GLY VAL ASN VAL SER PHE SER ILE PRO LYS GLU GLY ALA SEQRES 20 A 352 MET ALA PHE PHE ASP VAL PHE ALA MET PRO ALA ASP ALA SEQRES 21 A 352 LYS ASN LYS ASP GLU ALA TYR GLN PHE LEU ASN TYR LEU SEQRES 22 A 352 LEU ARG PRO ASP VAL VAL ALA HIS ILE SER ASP HIS VAL SEQRES 23 A 352 PHE TYR ALA ASN ALA ASN LYS ALA ALA THR PRO LEU VAL SEQRES 24 A 352 SER ALA GLU VAL ARG GLU ASN PRO GLY ILE TYR PRO PRO SEQRES 25 A 352 ALA ASP VAL ARG ALA LYS LEU PHE THR LEU LYS VAL GLN SEQRES 26 A 352 ASP PRO LYS ILE ASP ARG VAL ARG THR ARG ALA TRP THR SEQRES 27 A 352 LYS VAL LYS SER GLY LYS LEU GLU HIS HIS HIS HIS HIS SEQRES 28 A 352 HIS SEQRES 1 B 352 ALA GLU GLN LYS THR LEU HIS ILE TYR ASN TRP SER ASP SEQRES 2 B 352 TYR ILE ALA PRO ASP THR VAL ALA ASN PHE GLU LYS GLU SEQRES 3 B 352 THR GLY ILE LYS VAL VAL TYR ASP VAL PHE ASP SER ASN SEQRES 4 B 352 GLU VAL LEU GLU GLY LYS LEU MET ALA GLY SER THR GLY SEQRES 5 B 352 PHE ASP LEU VAL VAL PRO SER ALA SER PHE LEU GLU ARG SEQRES 6 B 352 GLN LEU THR ALA GLY VAL PHE GLN PRO LEU ASP LYS SER SEQRES 7 B 352 LYS LEU PRO GLU TRP LYS ASN LEU ASP PRO GLU LEU LEU SEQRES 8 B 352 LYS LEU VAL ALA LYS HIS ASP PRO ASP ASN LYS PHE ALA SEQRES 9 B 352 MET PRO TYR MET TRP ALA THR THR GLY ILE GLY TYR ASN SEQRES 10 B 352 VAL ASP LYS VAL LYS ALA VAL LEU GLY GLU ASN ALA PRO SEQRES 11 B 352 VAL ASP SER TRP ASP LEU ILE LEU LYS PRO GLU ASN LEU SEQRES 12 B 352 GLU LYS LEU LYS SER CYS GLY VAL SER PHE LEU ASP ALA SEQRES 13 B 352 PRO GLU GLU VAL PHE ALA THR VAL LEU ASN TYR LEU GLY SEQRES 14 B 352 LYS ASP PRO ASN SER THR LYS ALA ASP ASP TYR THR GLY SEQRES 15 B 352 PRO ALA THR ASP LEU LEU LEU LYS LEU ARG PRO ASN ILE SEQRES 16 B 352 ARG TYR PHE HIS SER SER GLN TYR ILE ASN ASP LEU ALA SEQRES 17 B 352 ASN GLY ASP ILE CYS VAL ALA ILE GLY TRP ALA GLY ASP SEQRES 18 B 352 VAL TRP GLN ALA SER ASN ARG ALA LYS GLU ALA LYS ASN SEQRES 19 B 352 GLY VAL ASN VAL SER PHE SER ILE PRO LYS GLU GLY ALA SEQRES 20 B 352 MET ALA PHE PHE ASP VAL PHE ALA MET PRO ALA ASP ALA SEQRES 21 B 352 LYS ASN LYS ASP GLU ALA TYR GLN PHE LEU ASN TYR LEU SEQRES 22 B 352 LEU ARG PRO ASP VAL VAL ALA HIS ILE SER ASP HIS VAL SEQRES 23 B 352 PHE TYR ALA ASN ALA ASN LYS ALA ALA THR PRO LEU VAL SEQRES 24 B 352 SER ALA GLU VAL ARG GLU ASN PRO GLY ILE TYR PRO PRO SEQRES 25 B 352 ALA ASP VAL ARG ALA LYS LEU PHE THR LEU LYS VAL GLN SEQRES 26 B 352 ASP PRO LYS ILE ASP ARG VAL ARG THR ARG ALA TRP THR SEQRES 27 B 352 LYS VAL LYS SER GLY LYS LEU GLU HIS HIS HIS HIS HIS SEQRES 28 B 352 HIS HET PGE A 401 10 HET PEG A 402 7 HET PEG A 403 7 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET EDO A 411 4 HET EDO A 412 4 HET EDO A 413 4 HET EDO A 414 4 HET CL A 415 1 HET CL A 416 1 HET PEG B 401 7 HET PEG B 402 7 HET PEG B 403 7 HET PEG B 404 7 HET EDO B 405 4 HET EDO B 406 4 HET EDO B 407 4 HET EDO B 408 4 HET CL B 409 1 HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PGE C6 H14 O4 FORMUL 4 PEG 6(C4 H10 O3) FORMUL 6 EDO 15(C2 H6 O2) FORMUL 17 CL 3(CL 1-) FORMUL 28 HOH *307(H2 O) HELIX 1 AA1 ASP A 44 GLY A 54 1 11 HELIX 2 AA2 SER A 64 GLY A 75 1 12 HELIX 3 AA3 SER A 85 GLN A 92 1 8 HELIX 4 AA4 ASP A 102 LEU A 112 5 11 HELIX 5 AA5 ASP A 113 ALA A 121 1 9 HELIX 6 AA6 LYS A 122 HIS A 123 5 2 HELIX 7 AA7 ASP A 124 LYS A 128 5 5 HELIX 8 AA8 VAL A 144 GLY A 152 1 9 HELIX 9 AA9 TRP A 160 LYS A 165 1 6 HELIX 10 AB1 LYS A 165 LYS A 173 1 9 HELIX 11 AB2 ALA A 182 LEU A 194 1 13 HELIX 12 AB3 LYS A 202 GLY A 208 1 7 HELIX 13 AB4 GLY A 208 ARG A 218 1 11 HELIX 14 AB5 PRO A 219 ILE A 221 5 3 HELIX 15 AB6 SER A 227 ASN A 235 1 9 HELIX 16 AB7 ALA A 245 LYS A 259 1 15 HELIX 17 AB8 ASN A 288 LEU A 300 1 13 HELIX 18 AB9 ARG A 301 PHE A 313 1 13 HELIX 19 AC1 ALA A 321 VAL A 325 5 5 HELIX 20 AC2 SER A 326 GLU A 331 1 6 HELIX 21 AC3 PRO A 338 ALA A 343 1 6 HELIX 22 AC4 ASP A 352 SER A 368 1 17 HELIX 23 AC5 ASP B 44 GLY B 54 1 11 HELIX 24 AC6 SER B 64 GLY B 75 1 12 HELIX 25 AC7 SER B 85 GLN B 92 1 8 HELIX 26 AC8 ASP B 102 LEU B 112 5 11 HELIX 27 AC9 ASP B 113 LYS B 122 1 10 HELIX 28 AD1 ASP B 124 LYS B 128 5 5 HELIX 29 AD2 VAL B 144 LEU B 151 1 8 HELIX 30 AD3 TRP B 160 LYS B 165 1 6 HELIX 31 AD4 LYS B 165 LYS B 173 1 9 HELIX 32 AD5 ALA B 182 LEU B 194 1 13 HELIX 33 AD6 LYS B 202 GLY B 208 1 7 HELIX 34 AD7 GLY B 208 ARG B 218 1 11 HELIX 35 AD8 PRO B 219 ILE B 221 5 3 HELIX 36 AD9 SER B 227 ASN B 235 1 9 HELIX 37 AE1 ALA B 245 LYS B 259 1 15 HELIX 38 AE2 ASN B 288 ARG B 301 1 14 HELIX 39 AE3 ARG B 301 PHE B 313 1 13 HELIX 40 AE4 ALA B 321 VAL B 325 5 5 HELIX 41 AE5 SER B 326 GLU B 331 1 6 HELIX 42 AE6 PRO B 338 ALA B 343 1 6 HELIX 43 AE7 ASP B 352 LYS B 367 1 16 SHEET 1 AA1 3 LYS A 56 PHE A 62 0 SHEET 2 AA1 3 THR A 31 TRP A 37 1 N LEU A 32 O VAL A 58 SHEET 3 AA1 3 LEU A 81 VAL A 82 1 O LEU A 81 N TYR A 35 SHEET 1 AA2 5 TYR A 223 PHE A 224 0 SHEET 2 AA2 5 VAL A 177 PHE A 179 1 N PHE A 179 O TYR A 223 SHEET 3 AA2 5 VAL A 240 TRP A 244 1 O ILE A 242 N SER A 178 SHEET 4 AA2 5 ALA A 130 ASN A 143 -1 N GLY A 139 O GLY A 243 SHEET 5 AA2 5 MET A 274 ALA A 281 -1 O ASP A 278 N TYR A 133 SHEET 1 AA3 3 VAL A 264 SER A 267 0 SHEET 2 AA3 3 ALA A 130 ASN A 143 -1 N TYR A 142 O SER A 265 SHEET 3 AA3 3 ALA A 315 ASN A 316 -1 O ALA A 315 N TRP A 135 SHEET 1 AA4 3 LYS B 56 PHE B 62 0 SHEET 2 AA4 3 THR B 31 TRP B 37 1 N LEU B 32 O VAL B 58 SHEET 3 AA4 3 LEU B 81 VAL B 82 1 O LEU B 81 N TYR B 35 SHEET 1 AA5 5 TYR B 223 PHE B 224 0 SHEET 2 AA5 5 VAL B 177 PHE B 179 1 N PHE B 179 O TYR B 223 SHEET 3 AA5 5 VAL B 240 TRP B 244 1 O VAL B 240 N SER B 178 SHEET 4 AA5 5 MET B 131 ASN B 143 -1 N GLY B 139 O GLY B 243 SHEET 5 AA5 5 MET B 274 PHE B 280 -1 O PHE B 280 N MET B 131 SHEET 1 AA6 3 VAL B 264 SER B 267 0 SHEET 2 AA6 3 MET B 131 ASN B 143 -1 N ILE B 140 O SER B 267 SHEET 3 AA6 3 ALA B 315 ASN B 316 -1 O ALA B 315 N TRP B 135 SSBOND 1 CYS A 175 CYS A 239 1555 1555 2.04 SSBOND 2 CYS B 175 CYS B 239 1555 1555 2.03 SITE 1 AC1 2 GLY A 246 HOH A 588 SITE 1 AC2 2 GLU A 115 LYS A 118 SITE 1 AC3 8 ASN A 192 ASP A 197 PRO A 198 ASN A 199 SITE 2 AC3 8 LYS A 344 PHE A 346 LYS A 349 HOH A 583 SITE 1 AC4 8 TRP A 135 ALA A 136 ILE A 268 TYR A 314 SITE 2 AC4 8 ALA A 315 ILE A 335 HOH A 515 HOH A 625 SITE 1 AC5 7 HIS A 33 VAL A 58 ASP A 60 LEU A 194 SITE 2 AC5 7 PRO A 209 HOH A 504 HOH A 602 SITE 1 AC6 2 PRO A 43 ALA A 47 SITE 1 AC7 5 ALA A 86 SER A 87 HIS A 123 PHE A 276 SITE 2 AC7 5 PHE A 277 SITE 1 AC8 5 LYS A 110 ASN A 111 LEU A 112 PRO A 114 SITE 2 AC8 5 LYS A 319 SITE 1 AC9 5 GLU A 115 LYS A 319 ALA A 339 ARG A 342 SITE 2 AC9 5 HOH A 540 SITE 1 AD1 3 ASP A 181 PRO A 183 GLU A 184 SITE 1 AD2 6 LYS A 270 PRO A 333 PRO A 338 VAL A 341 SITE 2 AD2 6 HOH A 605 HOH A 613 SITE 1 AD3 4 ARG A 218 ARG A 222 TYR A 223 PHE A 224 SITE 1 AD4 5 PRO A 114 LEU A 117 LYS A 118 ASN A 127 SITE 2 AD4 5 EDO A 414 SITE 1 AD5 4 ALA A 121 PRO A 125 ASP A 126 EDO A 413 SITE 1 AD6 2 TRP A 37 HOH A 507 SITE 1 AD7 1 GLU A 185 SITE 1 AD8 4 ASN B 65 ASP B 247 PEG B 402 EDO B 408 SITE 1 AD9 3 TRP B 244 PEG B 401 HOH B 520 SITE 1 AE1 6 ASN B 48 GLU B 52 TYR B 298 ARG B 301 SITE 2 AE1 6 ASP B 303 VAL B 304 SITE 1 AE2 6 PRO A 323 ASP B 310 SER B 326 ALA B 327 SITE 2 AE2 6 HOH B 504 HOH B 531 SITE 1 AE3 6 TRP B 135 ALA B 136 ILE B 268 ALA B 315 SITE 2 AE3 6 ILE B 335 HOH B 538 SITE 1 AE4 2 LYS B 319 HOH B 541 SITE 1 AE5 3 ASP B 113 THR B 322 ARG B 342 SITE 1 AE6 5 GLY B 246 PHE B 276 TYR B 314 PEG B 401 SITE 2 AE6 5 CL B 409 SITE 1 AE7 2 ASP B 278 EDO B 408 CRYST1 76.220 53.450 88.130 90.00 111.59 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013120 0.000000 0.005193 0.00000 SCALE2 0.000000 0.018709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012203 0.00000