HEADER RNA BINDING PROTEIN 26-MAR-20 6YFV TITLE CRYSTAL STRUCTURE OF MTR4-RED1 MINIMAL COMPLEX FROM CHAETOMIUM TITLE 2 THERMOPHILUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP DEPENDENT RNA HELICASE (DOB1)-LIKE PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RED1; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 209285; SOURCE 4 GENE: CTHT_0001850; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24D; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 11 ORGANISM_TAXID: 209285; SOURCE 12 GENE: CTHT_0014920; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 KEYWDS NCRNA DEGRADATION, MTREC, NUCLEAR EXOSOME, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.DOBREV,Y.L.AHMED,I.SINNING REVDAT 2 23-JUN-21 6YFV 1 JRNL REVDAT 1 05-MAY-21 6YFV 0 JRNL AUTH N.DOBREV,Y.L.AHMED,A.SIVADAS,K.SONI,T.FISCHER,I.SINNING JRNL TITL THE ZINC-FINGER PROTEIN RED1 ORCHESTRATES MTREC SUBMODULES JRNL TITL 2 AND BINDS THE MTL1 HELICASE ARCH DOMAIN. JRNL REF NAT COMMUN V. 12 3456 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34103492 JRNL DOI 10.1038/S41467-021-23565-3 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7139 - 6.2924 1.00 2861 158 0.2106 0.2742 REMARK 3 2 6.2924 - 4.9960 1.00 2705 144 0.2181 0.2280 REMARK 3 3 4.9960 - 4.3649 1.00 2675 139 0.1718 0.1997 REMARK 3 4 4.3649 - 3.9660 1.00 2638 154 0.1847 0.2309 REMARK 3 5 3.9660 - 3.6818 1.00 2616 157 0.2093 0.2732 REMARK 3 6 3.6818 - 3.4648 1.00 2604 143 0.2240 0.2547 REMARK 3 7 3.4648 - 3.2913 1.00 2643 137 0.2405 0.2897 REMARK 3 8 3.2913 - 3.1481 1.00 2621 126 0.2786 0.3104 REMARK 3 9 3.1481 - 3.0269 1.00 2607 128 0.2767 0.3199 REMARK 3 10 3.0269 - 2.9225 1.00 2588 139 0.2684 0.3316 REMARK 3 11 2.9225 - 2.8311 1.00 2592 141 0.2912 0.3451 REMARK 3 12 2.8311 - 2.7502 1.00 2605 139 0.3432 0.3720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 86.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 105.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4710 REMARK 3 ANGLE : 1.341 6377 REMARK 3 CHIRALITY : 0.073 677 REMARK 3 PLANARITY : 0.009 840 REMARK 3 DIHEDRAL : 9.459 3313 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 654 THROUGH 664 OR REMARK 3 RESID 666 THROUGH 796 OR RESID 800 REMARK 3 THROUGH 864 OR (RESID 865 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME OG )))) REMARK 3 SELECTION : (CHAIN C AND (RESID 654 THROUGH 664 OR REMARK 3 RESID 666 THROUGH 865)) REMARK 3 ATOM PAIRS NUMBER : 1940 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292100877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33467 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 49.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 39.10 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 3.04800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5 30% PEG 300, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.71867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.35933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.53900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.17967 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 120.89833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.71867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 48.35933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 24.17967 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 72.53900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 120.89833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 653 REMARK 465 GLY B 1011 REMARK 465 ALA B 1012 REMARK 465 MET B 1013 REMARK 465 SER B 1093 REMARK 465 HIS B 1094 REMARK 465 HIS B 1095 REMARK 465 HIS B 1096 REMARK 465 HIS B 1097 REMARK 465 HIS B 1098 REMARK 465 HIS B 1099 REMARK 465 MET C 653 REMARK 465 LYS C 797 REMARK 465 LYS C 798 REMARK 465 SER C 799 REMARK 465 GLY D 1011 REMARK 465 ALA D 1081 REMARK 465 ALA D 1082 REMARK 465 ASP D 1083 REMARK 465 GLU D 1084 REMARK 465 ARG D 1085 REMARK 465 ILE D 1086 REMARK 465 LEU D 1087 REMARK 465 LEU D 1088 REMARK 465 GLU D 1089 REMARK 465 LEU D 1090 REMARK 465 SER D 1091 REMARK 465 GLY D 1092 REMARK 465 SER D 1093 REMARK 465 HIS D 1094 REMARK 465 HIS D 1095 REMARK 465 HIS D 1096 REMARK 465 HIS D 1097 REMARK 465 HIS D 1098 REMARK 465 HIS D 1099 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL C 812 OG SER C 815 2.09 REMARK 500 OD2 ASP C 805 OG1 THR C 808 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 673 CB - CG - CD ANGL. DEV. = 17.0 DEGREES REMARK 500 CYS C 757 CA - CB - SG ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG C 822 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG C 822 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 798 -0.20 82.49 REMARK 500 SER C 745 -142.48 57.40 REMARK 500 PRO C 764 -85.03 -70.98 REMARK 500 MET C 803 -2.93 62.15 REMARK 500 TYR D1046 23.97 45.93 REMARK 500 ILE D1050 109.95 -170.30 REMARK 500 CYS D1057 107.26 -48.80 REMARK 500 LEU D1061 -64.30 -120.24 REMARK 500 THR D1064 39.90 38.79 REMARK 500 CYS D1070 98.68 -27.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS C 814 SER C 815 147.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1057 SG REMARK 620 2 CYS B1066 SG 107.7 REMARK 620 3 CYS B1070 SG 110.5 130.5 REMARK 620 4 HIS B1074 NE2 105.4 100.2 98.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D1057 SG REMARK 620 2 CYS D1066 SG 90.1 REMARK 620 3 CYS D1070 SG 127.4 133.8 REMARK 620 4 HIS D1074 NE2 92.2 90.8 110.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE C 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 1101 DBREF 6YFV A 654 865 UNP G0RZ64 G0RZ64_CHATD 654 865 DBREF 6YFV B 1014 1091 UNP G0S1V1 G0S1V1_CHATD 1032 1108 DBREF 6YFV C 654 865 UNP G0RZ64 G0RZ64_CHATD 654 865 DBREF 6YFV D 1014 1091 UNP G0S1V1 G0S1V1_CHATD 1032 1108 SEQADV 6YFV MET A 653 UNP G0RZ64 INITIATING METHIONINE SEQADV 6YFV GLY B 1011 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV ALA B 1012 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV MET B 1013 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV ALA B 1081 UNP G0S1V1 INSERTION SEQADV 6YFV GLY B 1092 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV SER B 1093 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV HIS B 1094 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV HIS B 1095 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV HIS B 1096 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV HIS B 1097 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV HIS B 1098 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV HIS B 1099 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV MET C 653 UNP G0RZ64 INITIATING METHIONINE SEQADV 6YFV GLY D 1011 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV ALA D 1012 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV MET D 1013 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV ALA D 1081 UNP G0S1V1 INSERTION SEQADV 6YFV GLY D 1092 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV SER D 1093 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV HIS D 1094 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV HIS D 1095 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV HIS D 1096 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV HIS D 1097 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV HIS D 1098 UNP G0S1V1 EXPRESSION TAG SEQADV 6YFV HIS D 1099 UNP G0S1V1 EXPRESSION TAG SEQRES 1 A 213 MET ASP GLU ALA LEU ILE LYS ASP TYR HIS SER ILE ARG SEQRES 2 A 213 GLU GLN ILE ASP GLN TYR THR LYS ASP MET VAL LEU VAL SEQRES 3 A 213 MET GLN HIS PRO THR ASN CYS VAL LYS TYR ILE ASN PRO SEQRES 4 A 213 GLY ARG LEU MET HIS VAL VAL THR SER ASP GLY THR ASP SEQRES 5 A 213 PHE GLY TRP GLY VAL ILE ILE ASN PHE TYR GLU ARG ARG SEQRES 6 A 213 PRO GLU ARG ASN ASN PRO ASN PRO GLY TRP SER PRO GLN SEQRES 7 A 213 GLU SER TYR VAL VAL GLU VAL LEU LEU ARG LEU SER SER SEQRES 8 A 213 ASP SER GLY SER VAL ASP SER LYS LEU LYS ASP ASN GLN SEQRES 9 A 213 CYS ILE PRO ALA GLY ILE ALA PRO VAL THR GLN LYS ASN SEQRES 10 A 213 ASP PRO GLY ARG TRP GLU VAL VAL PRO CYS LEU LEU SER SEQRES 11 A 213 CYS MET HIS GLY LEU SER GLN ILE LYS LEU HIS VAL PRO SEQRES 12 A 213 ASP LYS LYS SER GLY GLY SER MET ASP ASP PRO GLU THR SEQRES 13 A 213 ARG ARG ARG VAL GLY LYS SER LEU LEU GLU VAL GLN ARG SEQRES 14 A 213 ARG PHE GLU ASP GLY ILE PRO HIS MET ASP PRO ILE GLU SEQRES 15 A 213 ASN MET HIS ILE ARG ASP VAL GLU PHE LYS LYS LEU LEU SEQRES 16 A 213 ARG LYS ILE GLU VAL LEU GLU SER ARG LEU VAL ALA ASN SEQRES 17 A 213 PRO LEU HIS ASN SER SEQRES 1 B 89 GLY ALA MET ALA LEU SER TYR SER SER PRO LEU ARG PHE SEQRES 2 B 89 PHE ARG ASN PHE ARG PHE HIS PRO GLU PHE THR ARG LEU SEQRES 3 B 89 VAL ALA GLY GLY TRP ARG SER LEU THR TYR SER SER ARG SEQRES 4 B 89 ILE ASP PRO ASP LYS GLU MET CYS PRO TYR GLU LEU GLU SEQRES 5 B 89 GLY THR GLN CYS PRO SER GLY CYS SER PHE GLN HIS PHE SEQRES 6 B 89 VAL ASP ILE THR PRO ALA ALA ASP GLU ARG ILE LEU LEU SEQRES 7 B 89 GLU LEU SER GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 213 MET ASP GLU ALA LEU ILE LYS ASP TYR HIS SER ILE ARG SEQRES 2 C 213 GLU GLN ILE ASP GLN TYR THR LYS ASP MET VAL LEU VAL SEQRES 3 C 213 MET GLN HIS PRO THR ASN CYS VAL LYS TYR ILE ASN PRO SEQRES 4 C 213 GLY ARG LEU MET HIS VAL VAL THR SER ASP GLY THR ASP SEQRES 5 C 213 PHE GLY TRP GLY VAL ILE ILE ASN PHE TYR GLU ARG ARG SEQRES 6 C 213 PRO GLU ARG ASN ASN PRO ASN PRO GLY TRP SER PRO GLN SEQRES 7 C 213 GLU SER TYR VAL VAL GLU VAL LEU LEU ARG LEU SER SER SEQRES 8 C 213 ASP SER GLY SER VAL ASP SER LYS LEU LYS ASP ASN GLN SEQRES 9 C 213 CYS ILE PRO ALA GLY ILE ALA PRO VAL THR GLN LYS ASN SEQRES 10 C 213 ASP PRO GLY ARG TRP GLU VAL VAL PRO CYS LEU LEU SER SEQRES 11 C 213 CYS MET HIS GLY LEU SER GLN ILE LYS LEU HIS VAL PRO SEQRES 12 C 213 ASP LYS LYS SER GLY GLY SER MET ASP ASP PRO GLU THR SEQRES 13 C 213 ARG ARG ARG VAL GLY LYS SER LEU LEU GLU VAL GLN ARG SEQRES 14 C 213 ARG PHE GLU ASP GLY ILE PRO HIS MET ASP PRO ILE GLU SEQRES 15 C 213 ASN MET HIS ILE ARG ASP VAL GLU PHE LYS LYS LEU LEU SEQRES 16 C 213 ARG LYS ILE GLU VAL LEU GLU SER ARG LEU VAL ALA ASN SEQRES 17 C 213 PRO LEU HIS ASN SER SEQRES 1 D 89 GLY ALA MET ALA LEU SER TYR SER SER PRO LEU ARG PHE SEQRES 2 D 89 PHE ARG ASN PHE ARG PHE HIS PRO GLU PHE THR ARG LEU SEQRES 3 D 89 VAL ALA GLY GLY TRP ARG SER LEU THR TYR SER SER ARG SEQRES 4 D 89 ILE ASP PRO ASP LYS GLU MET CYS PRO TYR GLU LEU GLU SEQRES 5 D 89 GLY THR GLN CYS PRO SER GLY CYS SER PHE GLN HIS PHE SEQRES 6 D 89 VAL ASP ILE THR PRO ALA ALA ASP GLU ARG ILE LEU LEU SEQRES 7 D 89 GLU LEU SER GLY SER HIS HIS HIS HIS HIS HIS HET ZN B1101 1 HET EPE C 901 15 HET ZN D1101 1 HETNAM ZN ZINC ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 5 ZN 2(ZN 2+) FORMUL 6 EPE C8 H18 N2 O4 S HELIX 1 AA1 ASP A 654 HIS A 681 1 28 HELIX 2 AA2 HIS A 681 VAL A 686 1 6 HELIX 3 AA3 LYS A 687 ILE A 689 5 3 HELIX 4 AA4 SER A 728 GLU A 731 5 4 HELIX 5 AA5 ASP A 805 PHE A 823 1 19 HELIX 6 AA6 ASP A 840 ALA A 859 1 20 HELIX 7 AA7 ASN A 860 ASN A 864 5 5 HELIX 8 AA8 PHE B 1024 HIS B 1030 5 7 HELIX 9 AA9 GLU B 1032 VAL B 1037 1 6 HELIX 10 AB1 GLY B 1039 SER B 1047 5 9 HELIX 11 AB2 CYS B 1057 GLY B 1063 1 7 HELIX 12 AB3 HIS B 1074 THR B 1079 1 6 HELIX 13 AB4 ALA B 1082 SER B 1091 1 10 HELIX 14 AB5 GLU C 655 HIS C 681 1 27 HELIX 15 AB6 HIS C 681 VAL C 686 1 6 HELIX 16 AB7 LYS C 687 ILE C 689 5 3 HELIX 17 AB8 SER C 728 GLU C 731 5 4 HELIX 18 AB9 ASP C 805 PHE C 823 1 19 HELIX 19 AC1 ASP C 840 ALA C 859 1 20 HELIX 20 AC2 ASN C 860 SER C 865 5 6 HELIX 21 AC3 PHE D 1024 HIS D 1030 5 7 HELIX 22 AC4 GLU D 1032 VAL D 1037 1 6 HELIX 23 AC5 HIS D 1074 THR D 1079 1 6 SHEET 1 AA1 5 ARG A 773 LEU A 780 0 SHEET 2 AA1 5 TYR A 733 LEU A 741 -1 N VAL A 735 O CYS A 779 SHEET 3 AA1 5 ASP A 704 GLU A 715 -1 N ASN A 712 O GLU A 736 SHEET 4 AA1 5 ARG A 693 VAL A 698 -1 N ARG A 693 O ILE A 710 SHEET 5 AA1 5 MET A 784 LYS A 791 -1 O HIS A 785 N HIS A 696 SHEET 1 AA2 5 GLY C 772 LEU C 780 0 SHEET 2 AA2 5 TYR C 733 SER C 742 -1 N VAL C 735 O CYS C 779 SHEET 3 AA2 5 ASP C 704 GLU C 715 -1 N ASN C 712 O GLU C 736 SHEET 4 AA2 5 ARG C 693 VAL C 698 -1 N ARG C 693 O ILE C 710 SHEET 5 AA2 5 MET C 784 LYS C 791 -1 O HIS C 785 N HIS C 696 SSBOND 1 CYS C 757 CYS C 783 1555 1555 2.16 LINK SG CYS B1057 ZN ZN B1101 1555 1555 2.33 LINK SG CYS B1066 ZN ZN B1101 1555 1555 2.24 LINK SG CYS B1070 ZN ZN B1101 1555 1555 2.32 LINK NE2 HIS B1074 ZN ZN B1101 1555 1555 2.05 LINK SG CYS D1057 ZN ZN D1101 1555 1555 2.49 LINK SG CYS D1066 ZN ZN D1101 1555 1555 2.48 LINK SG CYS D1070 ZN ZN D1101 1555 1555 2.43 LINK NE2 HIS D1074 ZN ZN D1101 1555 1555 2.08 SITE 1 AC1 4 CYS B1057 CYS B1066 CYS B1070 HIS B1074 SITE 1 AC2 4 PHE B1072 GLU C 715 TRP C 727 TYR C 733 SITE 1 AC3 4 CYS D1057 CYS D1066 CYS D1070 HIS D1074 CRYST1 172.186 172.186 145.078 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005808 0.003353 0.000000 0.00000 SCALE2 0.000000 0.006706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006893 0.00000