HEADER ANTIBIOTIC 26-MAR-20 6YFY TITLE SOLID-STATE NMR STRUCTURE OF THE D-ARG4,L10-TEIXOBACTIN - LIPID II TITLE 2 COMPLEX IN LIPID BILAYERS. CAVEAT 6YFY MUB I 1 HAS WRONG CHIRALITY AT ATOM C9 MUB J 1 HAS WRONG CAVEAT 2 6YFY CHIRALITY AT ATOM C9 MUB K 1 HAS WRONG CHIRALITY AT ATOM C9 CAVEAT 3 6YFY MUB L 1 HAS WRONG CHIRALITY AT ATOM C9 NAG K 2 HAS WRONG CAVEAT 4 6YFY CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ARG4,LEU10-TEIXOBACTIN; COMPND 3 CHAIN: A, B, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LIPID II; COMPND 8 CHAIN: C, D, G, H SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ELEFTHERIA TERRAE; SOURCE 4 ORGANISM_TAXID: 1597781; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS SIMULANS; SOURCE 7 ORGANISM_TAXID: 1286 KEYWDS TEIXOBACTIN LIPID II COMPLEX ANTIMICROBIAL PEPTIDE, ANTIBIOTIC EXPDTA SOLID-STATE NMR NUMMDL 26 AUTHOR M.H.WEINGARTH,R.SHUKLA REVDAT 7 07-AUG-24 6YFY 1 REMARK LINK ATOM REVDAT 6 15-NOV-23 6YFY 1 ATOM REVDAT 5 17-MAY-23 6YFY 1 TITLE REVDAT 4 15-SEP-21 6YFY 1 LINK REVDAT 3 19-AUG-20 6YFY 1 JRNL REMARK HETSYN LINK REVDAT 3 2 1 ATOM REVDAT 2 29-JUL-20 6YFY 1 CAVEAT COMPND REMARK HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 10-JUN-20 6YFY 0 JRNL AUTH R.SHUKLA,J.MEDEIROS-SILVA,A.PARMAR,B.J.A.VERMEULEN,S.DAS, JRNL AUTH 2 A.L.PAIONI,S.JEKHMANE,J.LORENT,A.M.J.J.BONVIN,M.BALDUS, JRNL AUTH 3 M.LELLI,E.J.A.VELDHUIZEN,E.BREUKINK,I.SINGH,M.WEINGARTH JRNL TITL MODE OF ACTION OF TEIXOBACTINS IN CELLULAR MEMBRANES. JRNL REF NAT COMMUN V. 11 2848 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32503964 JRNL DOI 10.1038/S41467-020-16600-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, HADDOCK REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. (CNS), BONVIN (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YFY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107524. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 40 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 25 MM SODIUM CHLORIDE, 40 MM REMARK 210 SODIUM PHOSPHATE, 1.6 MM [U-99% REMARK 210 13C; U-99% 15N] D-ARG,LEU10- REMARK 210 TEIXOBACTIN, 0.8 MM [U-99% 13C; REMARK 210 U-99% 15N] LIPID II, 1.6 MM [U- REMARK 210 99% 13C; U-99% 15N] LEU10- REMARK 210 TEIXOBACTIN, 40MM PHOSPHATE 25MM REMARK 210 NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NH; 2D CC; 2D TOBSY; 3D HNCO; REMARK 210 3D HNCA REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ; 700 MHZ; 800 MHZ; 500 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, TOPSPIN REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 26 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 26 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ALL THE STRUCTURES ARE ALIGNED TO CHAINS A,B,E,F OF MODEL REMARK 210 5. RESIDUES 1-5 AND 9-12 IN CHAINS C,D,G,H ARE HIGHLY FLEXIBLE REMARK 210 (NO NMR RESTRAINTS WERE APPLIED).ALIGNMENT WAS PERFORMED IN REMARK 210 PYMOL USING THE ALIGNTO COMMAND, AND WE CONVERTED THE PDB FILE REMARK 210 TO A CIF FILE USING THE ONLINE CONVERTOR PROVIDED BY WWPDB. REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F, C, D, G, H, I, J, REMARK 350 AND CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 LIPID II IS A PRECURSOR MOLECULE IN THE SYNTHESIS OF THE CELL WALL REMARK 400 OF BACTERIA REMARK 400 REMARK 400 THE D-ARG4,LEU10-TEIXOBACTIN IS POLYPEPTIDE, A MEMBER OF ANTIBIOTIC REMARK 400 CLASS. REMARK 400 REMARK 400 THE LIPID II IS , A MEMBER OF GLYCAN COMPONENT CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: D-ARG4,LEU10-TEIXOBACTIN REMARK 400 CHAIN: A, B, E, F REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 400 REMARK 400 GROUP: 2 REMARK 400 NAME: LIPID II REMARK 400 CHAIN: A, B, E, F, C, D, G, H, I, J, K, L REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 COMPONENT_2: RESIDUE 2PO, 2 COPIES REMARK 400 COMPONENT_3: RESIDUE MUB REMARK 400 COMPONENT_4: RESIDUE NAG REMARK 400 COMPONENT_5: RESIDUE P1W, 3 COPIES REMARK 400 DESCRIPTION: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS H 3 OXT DAL H 5 1.51 REMARK 500 HZ2 LYS D 3 O DAL D 5 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DAL C 4 N DAL C 4 CA 0.143 REMARK 500 1 DAL C 4 CA DAL C 4 CB 0.157 REMARK 500 1 DAL D 4 N DAL D 4 CA 0.143 REMARK 500 1 DAL D 4 CA DAL D 4 CB 0.157 REMARK 500 1 DAL G 4 N DAL G 4 CA 0.143 REMARK 500 1 DAL G 4 CA DAL G 4 CB 0.156 REMARK 500 1 DAL H 4 N DAL H 4 CA 0.144 REMARK 500 1 DAL H 4 CA DAL H 4 CB 0.157 REMARK 500 2 DAL C 4 CA DAL C 4 CB 0.166 REMARK 500 2 DAL D 4 CA DAL D 4 CB 0.165 REMARK 500 2 DAL G 4 CA DAL G 4 CB 0.168 REMARK 500 2 DAL H 4 CA DAL H 4 CB 0.166 REMARK 500 3 DAL C 4 N DAL C 4 CA 0.143 REMARK 500 3 DAL C 4 CA DAL C 4 CB 0.180 REMARK 500 3 DAL C 4 CA DAL C 4 C 0.156 REMARK 500 3 DAL C 5 N DAL C 5 CA 0.195 REMARK 500 3 DAL D 4 N DAL D 4 CA 0.145 REMARK 500 3 DAL D 4 CA DAL D 4 CB 0.181 REMARK 500 3 DAL D 5 N DAL D 5 CA 0.197 REMARK 500 3 DAL G 4 N DAL G 4 CA 0.144 REMARK 500 3 DAL G 4 CA DAL G 4 CB 0.179 REMARK 500 3 DAL G 4 CA DAL G 4 C 0.157 REMARK 500 3 DAL G 5 N DAL G 5 CA 0.175 REMARK 500 3 DAL H 4 N DAL H 4 CA 0.145 REMARK 500 3 DAL H 4 CA DAL H 4 CB 0.180 REMARK 500 3 DAL H 4 CA DAL H 4 C 0.157 REMARK 500 3 DAL H 5 N DAL H 5 CA 0.196 REMARK 500 4 DAL C 4 CA DAL C 4 CB 0.221 REMARK 500 4 DAL C 4 CA DAL C 4 C 0.177 REMARK 500 4 DAL C 5 N DAL C 5 CA 0.137 REMARK 500 4 DAL D 4 CA DAL D 4 CB 0.221 REMARK 500 4 DAL D 4 CA DAL D 4 C 0.180 REMARK 500 4 DAL G 4 CA DAL G 4 CB 0.220 REMARK 500 4 DAL G 4 CA DAL G 4 C 0.178 REMARK 500 4 DAL H 4 CA DAL H 4 CB 0.220 REMARK 500 4 DAL H 4 CA DAL H 4 C 0.178 REMARK 500 5 DAL C 4 CA DAL C 4 CB 0.181 REMARK 500 5 DAL D 4 CA DAL D 4 CB 0.172 REMARK 500 5 DAL D 4 CA DAL D 4 C 0.165 REMARK 500 5 DAL G 4 CA DAL G 4 CB 0.171 REMARK 500 5 DAL G 4 CA DAL G 4 C 0.167 REMARK 500 5 DAL H 4 CA DAL H 4 CB 0.173 REMARK 500 6 DAL C 4 N DAL C 4 CA 0.122 REMARK 500 6 DAL C 4 CA DAL C 4 CB 0.170 REMARK 500 6 DAL C 4 CA DAL C 4 C 0.174 REMARK 500 6 DAL C 5 N DAL C 5 CA 0.125 REMARK 500 6 DAL D 4 N DAL D 4 CA 0.122 REMARK 500 6 DAL D 4 CA DAL D 4 CB 0.170 REMARK 500 6 DAL D 4 CA DAL D 4 C 0.174 REMARK 500 6 DAL D 5 N DAL D 5 CA 0.126 REMARK 500 REMARK 500 THIS ENTRY HAS 287 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DGL C 2 CB - CA - C ANGL. DEV. = -14.1 DEGREES REMARK 500 1 LYS C 3 CD - CE - NZ ANGL. DEV. = 19.0 DEGREES REMARK 500 1 DAL C 4 CB - CA - C ANGL. DEV. = 18.7 DEGREES REMARK 500 1 DAL C 4 N - CA - CB ANGL. DEV. = 10.0 DEGREES REMARK 500 1 DAL C 5 N - CA - CB ANGL. DEV. = -9.6 DEGREES REMARK 500 1 DGL D 2 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 1 LYS D 3 CD - CE - NZ ANGL. DEV. = 19.0 DEGREES REMARK 500 1 DAL D 4 CB - CA - C ANGL. DEV. = 18.8 DEGREES REMARK 500 1 DAL D 4 N - CA - CB ANGL. DEV. = 10.0 DEGREES REMARK 500 1 DAL D 5 N - CA - CB ANGL. DEV. = -10.0 DEGREES REMARK 500 1 LYS G 3 CD - CE - NZ ANGL. DEV. = 19.0 DEGREES REMARK 500 1 DAL G 4 CB - CA - C ANGL. DEV. = 18.8 DEGREES REMARK 500 1 DAL G 4 N - CA - CB ANGL. DEV. = 10.1 DEGREES REMARK 500 1 DAL G 5 N - CA - CB ANGL. DEV. = -9.7 DEGREES REMARK 500 1 LYS H 3 CD - CE - NZ ANGL. DEV. = 19.0 DEGREES REMARK 500 1 DAL H 4 CB - CA - C ANGL. DEV. = 18.7 DEGREES REMARK 500 1 DAL H 4 N - CA - CB ANGL. DEV. = 10.1 DEGREES REMARK 500 1 DAL H 5 N - CA - CB ANGL. DEV. = -9.5 DEGREES REMARK 500 2 DGL C 2 CB - CA - C ANGL. DEV. = -17.9 DEGREES REMARK 500 2 LYS C 3 CD - CE - NZ ANGL. DEV. = 15.9 DEGREES REMARK 500 2 DAL C 4 CB - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 2 DAL C 4 N - CA - CB ANGL. DEV. = 8.6 DEGREES REMARK 500 2 DAL C 5 N - CA - CB ANGL. DEV. = -13.6 DEGREES REMARK 500 2 LYS D 3 CD - CE - NZ ANGL. DEV. = 16.0 DEGREES REMARK 500 2 DAL D 4 CB - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 2 DAL D 4 N - CA - CB ANGL. DEV. = 8.7 DEGREES REMARK 500 2 DAL D 5 N - CA - CB ANGL. DEV. = -13.5 DEGREES REMARK 500 2 LYS G 3 CD - CE - NZ ANGL. DEV. = 16.0 DEGREES REMARK 500 2 DAL G 4 CB - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 2 DAL G 4 N - CA - CB ANGL. DEV. = 8.7 DEGREES REMARK 500 2 DAL G 5 N - CA - CB ANGL. DEV. = -13.5 DEGREES REMARK 500 2 DGL H 2 CB - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 2 LYS H 3 CD - CE - NZ ANGL. DEV. = 16.0 DEGREES REMARK 500 2 DAL H 4 CB - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 2 DAL H 4 N - CA - CB ANGL. DEV. = 8.5 DEGREES REMARK 500 2 DAL H 5 N - CA - CB ANGL. DEV. = -13.4 DEGREES REMARK 500 3 LYS C 3 CD - CE - NZ ANGL. DEV. = 17.7 DEGREES REMARK 500 3 DAL C 4 CB - CA - C ANGL. DEV. = 18.3 DEGREES REMARK 500 3 DAL C 4 N - CA - CB ANGL. DEV. = 9.4 DEGREES REMARK 500 3 DAL C 5 N - CA - CB ANGL. DEV. = -16.9 DEGREES REMARK 500 3 DAL C 5 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 3 LYS D 3 CD - CE - NZ ANGL. DEV. = 17.6 DEGREES REMARK 500 3 DAL D 4 CB - CA - C ANGL. DEV. = 18.4 DEGREES REMARK 500 3 DAL D 4 N - CA - CB ANGL. DEV. = 9.3 DEGREES REMARK 500 3 DAL D 5 N - CA - CB ANGL. DEV. = -16.9 DEGREES REMARK 500 3 DAL D 5 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 3 LYS G 3 CD - CE - NZ ANGL. DEV. = 17.7 DEGREES REMARK 500 3 DAL G 4 CB - CA - C ANGL. DEV. = 18.4 DEGREES REMARK 500 3 DAL G 4 N - CA - CB ANGL. DEV. = 9.5 DEGREES REMARK 500 3 DAL G 5 N - CA - CB ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 431 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 DTH E 8 16.15 153.01 REMARK 500 1 ALA E 9 -77.23 -89.62 REMARK 500 1 ALA F 9 -76.52 -61.15 REMARK 500 1 DAL C 4 -58.77 -98.11 REMARK 500 1 DAL H 4 -65.70 -87.75 REMARK 500 2 DTH A 8 21.84 142.44 REMARK 500 2 ALA A 9 -77.00 -78.53 REMARK 500 2 DTH B 8 12.54 162.58 REMARK 500 2 ALA B 9 -65.54 -91.35 REMARK 500 2 DTH E 8 13.67 159.38 REMARK 500 2 ALA E 9 -70.24 -89.91 REMARK 500 2 DAL C 4 -75.20 -166.39 REMARK 500 2 DAL D 4 -89.91 -66.62 REMARK 500 2 DAL G 4 -46.82 -88.24 REMARK 500 2 DAL H 4 -85.94 -51.94 REMARK 500 3 ALA A 9 -71.39 -78.95 REMARK 500 3 ALA B 9 -77.16 -71.97 REMARK 500 3 ALA F 9 -89.92 -74.15 REMARK 500 3 DAL C 4 -64.80 -75.54 REMARK 500 3 DAL D 4 -49.62 -86.85 REMARK 500 3 DAL G 4 -46.89 -90.52 REMARK 500 3 DAL H 4 -90.68 -120.08 REMARK 500 4 ALA E 9 -82.87 -73.95 REMARK 500 4 ALA F 9 -91.03 -81.26 REMARK 500 4 DAL C 4 -100.00 -97.78 REMARK 500 4 DAL D 4 -73.01 -75.98 REMARK 500 4 DAL G 4 -92.10 171.80 REMARK 500 4 DAL H 4 -86.77 -53.62 REMARK 500 5 SER B 7 -167.64 -165.56 REMARK 500 5 ALA B 9 -70.47 -80.55 REMARK 500 5 SER E 7 -171.66 -172.15 REMARK 500 5 DTH F 8 37.16 140.89 REMARK 500 5 ALA F 9 -87.14 -95.07 REMARK 500 5 DAL C 4 -95.26 -49.71 REMARK 500 5 DAL D 4 -121.80 -104.66 REMARK 500 5 DAL G 4 -80.95 -81.77 REMARK 500 5 DAL H 4 -80.27 -61.07 REMARK 500 6 DTH A 8 10.85 149.74 REMARK 500 6 ALA A 9 -81.89 -88.02 REMARK 500 6 DTH B 8 37.58 142.80 REMARK 500 6 ALA B 9 -86.32 -109.70 REMARK 500 6 DTH E 8 7.06 157.02 REMARK 500 6 DTH F 8 16.12 149.50 REMARK 500 6 DAL D 4 -77.87 -75.06 REMARK 500 6 DAL G 4 -68.71 -69.25 REMARK 500 6 DAL H 4 -85.54 -64.92 REMARK 500 7 ALA A 9 -73.24 -108.55 REMARK 500 7 DTH B 8 17.99 166.72 REMARK 500 7 ALA B 9 -65.91 -100.74 REMARK 500 7 DTH E 8 37.14 157.71 REMARK 500 REMARK 500 THIS ENTRY HAS 195 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 7 DTH F 8 -10.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34505 RELATED DB: BMRB REMARK 900 SOLID-STATE NMR STRUCTURE OF THE D-ARG4,L10-TEIXOBACTIN - LIPID II REMARK 900 COMPLEX IN LIPID BILAYERS DBREF 6YFY A 1 11 PDB 6YFY 6YFY 1 11 DBREF 6YFY B 1 11 PDB 6YFY 6YFY 1 11 DBREF 6YFY E 1 11 PDB 6YFY 6YFY 1 11 DBREF 6YFY F 1 11 PDB 6YFY 6YFY 1 11 DBREF 6YFY C 1 5 PDB 6YFY 6YFY 1 5 DBREF 6YFY D 1 5 PDB 6YFY 6YFY 1 5 DBREF 6YFY G 1 5 PDB 6YFY 6YFY 1 5 DBREF 6YFY H 1 5 PDB 6YFY 6YFY 1 5 SEQRES 1 A 11 ZAE ILE SER DAR 28J ILE SER DTH ALA LEU ILE SEQRES 1 B 11 ZAE ILE SER DAR 28J ILE SER DTH ALA LEU ILE SEQRES 1 E 11 ZAE ILE SER DAR 28J ILE SER DTH ALA LEU ILE SEQRES 1 F 11 ZAE ILE SER DAR 28J ILE SER DTH ALA LEU ILE SEQRES 1 C 5 ALA DGL LYS DAL DAL SEQRES 1 D 5 ALA DGL LYS DAL DAL SEQRES 1 G 5 ALA DGL LYS DAL DAL SEQRES 1 H 5 ALA DGL LYS DAL DAL HET ZAE A 1 24 HET DAR A 4 24 HET 28J A 5 18 HET DTH A 8 13 HET ZAE B 1 24 HET DAR B 4 24 HET 28J B 5 18 HET DTH B 8 13 HET ZAE E 1 24 HET DAR E 4 24 HET 28J E 5 18 HET DTH E 8 13 HET ZAE F 1 24 HET DAR F 4 24 HET 28J F 5 18 HET DTH F 8 13 HET DGL C 2 14 HET DAL C 4 10 HET DAL C 5 11 HET DGL D 2 14 HET DAL D 4 10 HET DAL D 5 11 HET DGL G 2 14 HET DAL G 4 10 HET DAL G 5 11 HET DGL H 2 14 HET DAL H 4 10 HET DAL H 5 11 HET MUB I 1 35 HET NAG I 2 28 HET MUB J 1 35 HET NAG J 2 28 HET MUB K 1 35 HET NAG K 2 28 HET MUB L 1 35 HET NAG L 2 28 HET 2PO A 101 4 HET 2PO A 102 4 HET P1W A 103 13 HET P1W A 104 13 HET P1W A 105 14 HET P1W A 106 13 HET P1W A 107 14 HET 2PO B 101 4 HET 2PO B 102 4 HET P1W B 103 13 HET 2PO E 101 4 HET 2PO E 102 4 HET P1W E 103 13 HET P1W F 101 13 HET P1W F 102 14 HET 2PO F 103 4 HET 2PO F 104 4 HET P1W F 105 13 HET P1W F 106 13 HET P1W F 107 14 HETNAM ZAE N-METHYL-D-PHENYLALANINE HETNAM DAR D-ARGININE HETNAM 28J D-ALLOISOLEUCINE HETNAM DTH D-THREONINE HETNAM DGL D-GLUTAMIC ACID HETNAM DAL D-ALANINE HETNAM MUB N-ACETYL-ALPHA-MURAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM 2PO PHOSPHONATE HETNAM P1W 3-METHYLBUT-2-EN-1-OL HETSYN MUB N-ACETYL-MURAMIC ACID; N-ACETYLMURAMIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 1 ZAE 4(C10 H13 N O2) FORMUL 1 DAR 4(C6 H15 N4 O2 1+) FORMUL 1 28J 4(C6 H13 N O2) FORMUL 1 DTH 4(C4 H9 N O3) FORMUL 5 DGL 4(C5 H9 N O4) FORMUL 5 DAL 8(C3 H7 N O2) FORMUL 9 MUB 4(C11 H19 N O8) FORMUL 9 NAG 4(C8 H15 N O6) FORMUL 13 2PO 8(H O3 P 2-) FORMUL 15 P1W 12(C5 H10 O) SHEET 1 AA1 4 SER A 3 SER A 7 0 SHEET 2 AA1 4 ILE B 2 SER B 7 -1 O SER B 3 N SER A 7 SHEET 3 AA1 4 ILE E 2 SER E 7 -1 O DAR E 4 N DAR B 4 SHEET 4 AA1 4 SER F 3 SER F 7 -1 O SER F 7 N SER E 3 LINK C ZAE A 1 N ILE A 2 1555 1555 1.33 LINK C SER A 3 N DAR A 4 1555 1555 1.34 LINK C DAR A 4 N 28J A 5 1555 1555 1.32 LINK C 28J A 5 N ILE A 6 1555 1555 1.34 LINK C SER A 7 N DTH A 8 1555 1555 1.35 LINK C DTH A 8 N ALA A 9 1555 1555 1.33 LINK OG1 DTH A 8 C ILE A 11 1555 1555 1.44 LINK O3P 2PO A 101 P 2PO A 102 1555 1555 1.60 LINK P 2PO A 101 O1 MUB I 1 1555 1555 1.64 LINK O3P 2PO A 102 C1 P1W A 103 1555 1555 1.43 LINK C4 P1W A 103 C1 P1W A 104 1555 1555 1.53 LINK C4 P1W A 104 C1 P1W A 105 1555 1555 1.53 LINK C4 P1W A 106 C1 P1W A 107 1555 1555 1.54 LINK C1 P1W A 106 C4 P1W B 103 1555 1555 1.54 LINK C ZAE B 1 N ILE B 2 1555 1555 1.32 LINK C SER B 3 N DAR B 4 1555 1555 1.33 LINK C DAR B 4 N 28J B 5 1555 1555 1.32 LINK C 28J B 5 N ILE B 6 1555 1555 1.36 LINK C SER B 7 N DTH B 8 1555 1555 1.36 LINK C DTH B 8 N ALA B 9 1555 1555 1.35 LINK OG1 DTH B 8 C ILE B 11 1555 1555 1.43 LINK O3P 2PO B 101 P 2PO B 102 1555 1555 1.59 LINK P 2PO B 101 O1 MUB J 1 1555 1555 1.63 LINK O3P 2PO B 102 C1 P1W B 103 1555 1555 1.44 LINK C ZAE E 1 N ILE E 2 1555 1555 1.31 LINK C SER E 3 N DAR E 4 1555 1555 1.31 LINK C DAR E 4 N 28J E 5 1555 1555 1.33 LINK C 28J E 5 N ILE E 6 1555 1555 1.34 LINK C SER E 7 N DTH E 8 1555 1555 1.33 LINK C DTH E 8 N ALA E 9 1555 1555 1.34 LINK OG1 DTH E 8 C ILE E 11 1555 1555 1.43 LINK O3P 2PO E 101 P 2PO E 102 1555 1555 1.59 LINK P 2PO E 101 O1 MUB K 1 1555 1555 1.62 LINK O3P 2PO E 102 C1 P1W E 103 1555 1555 1.42 LINK C4 P1W E 103 C1 P1W F 101 1555 1555 1.54 LINK C ZAE F 1 N ILE F 2 1555 1555 1.33 LINK C SER F 3 N DAR F 4 1555 1555 1.32 LINK C DAR F 4 N 28J F 5 1555 1555 1.33 LINK C 28J F 5 N ILE F 6 1555 1555 1.33 LINK C SER F 7 N DTH F 8 1555 1555 1.34 LINK C DTH F 8 N ALA F 9 1555 1555 1.34 LINK OG1 DTH F 8 C ILE F 11 1555 1555 1.43 LINK C4 P1W F 101 C1 P1W F 102 1555 1555 1.53 LINK O3P 2PO F 103 P 2PO F 104 1555 1555 1.61 LINK P 2PO F 103 O1 MUB L 1 1555 1555 1.63 LINK O3P 2PO F 104 C1 P1W F 105 1555 1555 1.43 LINK C4 P1W F 105 C1 P1W F 106 1555 1555 1.53 LINK C4 P1W F 106 C1 P1W F 107 1555 1555 1.53 LINK C ALA C 1 N DGL C 2 1555 1555 1.40 LINK N ALA C 1 C10 MUB I 1 1555 1555 1.37 LINK CD DGL C 2 N LYS C 3 1555 1555 1.31 LINK C LYS C 3 N DAL C 4 1555 1555 1.40 LINK C DAL C 4 N DAL C 5 1555 1555 1.38 LINK C ALA D 1 N DGL D 2 1555 1555 1.36 LINK N ALA D 1 C10 MUB J 1 1555 1555 1.36 LINK CD DGL D 2 N LYS D 3 1555 1555 1.31 LINK C LYS D 3 N DAL D 4 1555 1555 1.40 LINK C DAL D 4 N DAL D 5 1555 1555 1.38 LINK C ALA G 1 N DGL G 2 1555 1555 1.36 LINK N ALA G 1 C10 MUB K 1 1555 1555 1.36 LINK CD DGL G 2 N LYS G 3 1555 1555 1.31 LINK C LYS G 3 N DAL G 4 1555 1555 1.40 LINK C DAL G 4 N DAL G 5 1555 1555 1.38 LINK C ALA H 1 N DGL H 2 1555 1555 1.36 LINK N ALA H 1 C10 MUB L 1 1555 1555 1.37 LINK CD DGL H 2 N LYS H 3 1555 1555 1.31 LINK C LYS H 3 N DAL H 4 1555 1555 1.40 LINK C DAL H 4 N DAL H 5 1555 1555 1.38 LINK O4 MUB I 1 C1 NAG I 2 1555 1555 1.44 LINK O4 MUB J 1 C1 NAG J 2 1555 1555 1.44 LINK O4 MUB K 1 C1 NAG K 2 1555 1555 1.44 LINK O4 MUB L 1 C1 NAG L 2 1555 1555 1.43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 HETATM 1 N ZAE A 1 7.123 -16.480 -1.839 1.00 0.00 N HETATM 2 CA ZAE A 1 7.172 -15.641 -3.085 1.00 0.00 C HETATM 3 C ZAE A 1 6.712 -14.199 -2.829 1.00 0.00 C HETATM 4 O ZAE A 1 7.526 -13.284 -2.730 1.00 0.00 O HETATM 5 CB ZAE A 1 8.591 -15.636 -3.679 1.00 0.00 C HETATM 6 CG ZAE A 1 8.624 -15.432 -5.173 1.00 0.00 C HETATM 7 CD1 ZAE A 1 7.524 -15.732 -5.965 1.00 0.00 C HETATM 8 CD2 ZAE A 1 9.766 -14.950 -5.792 1.00 0.00 C HETATM 9 CE1 ZAE A 1 7.565 -15.533 -7.342 1.00 0.00 C HETATM 10 CE2 ZAE A 1 9.814 -14.751 -7.161 1.00 0.00 C HETATM 11 CZ ZAE A 1 8.717 -15.050 -7.938 1.00 0.00 C HETATM 12 C10 ZAE A 1 8.041 -15.955 -0.810 1.00 0.00 C HETATM 13 H1 ZAE A 1 7.412 -17.450 -2.059 1.00 0.00 H HETATM 14 HA ZAE A 1 6.501 -16.082 -3.809 1.00 0.00 H HETATM 15 HB2 ZAE A 1 9.158 -14.836 -3.223 1.00 0.00 H HETATM 16 HB3 ZAE A 1 9.069 -16.577 -3.460 1.00 0.00 H HETATM 17 HD1 ZAE A 1 6.632 -16.109 -5.506 1.00 0.00 H HETATM 18 HD2 ZAE A 1 10.626 -14.717 -5.192 1.00 0.00 H HETATM 19 HE1 ZAE A 1 6.711 -15.765 -7.945 1.00 0.00 H HETATM 20 HE2 ZAE A 1 10.713 -14.377 -7.618 1.00 0.00 H HETATM 21 HZ ZAE A 1 8.755 -14.894 -9.000 1.00 0.00 H HETATM 22 H11 ZAE A 1 7.944 -16.535 0.098 1.00 0.00 H HETATM 23 H12 ZAE A 1 7.794 -14.922 -0.604 1.00 0.00 H HETATM 24 H13 ZAE A 1 9.059 -16.014 -1.168 1.00 0.00 H