HEADER TRANSFERASE 27-MAR-20 6YG0 TITLE CRYSTAL STRUCTURE OF S287D,T291D MKK7 (MAP2K7), APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAPKK 7,JNK-ACTIVATING KINASE 2,MAPK/ERK KINASE 7,MEK 7, COMPND 5 STRESS-ACTIVATED PROTEIN KINASE KINASE 4,SAPKK4,C-JUN N-TERMINAL COMPND 6 KINASE KINASE 2,JNKK 2; COMPND 7 EC: 2.7.12.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP2K7, JNKK2, MEK7, MKK7, PRKMK7, SKK4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS KINASE, KINASE INHIBITOR, MKK7, MEK7, MAP2K7, MAP2K, MEK, JNK KEYWDS 2 SIGNALING, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 24-JAN-24 6YG0 1 REMARK REVDAT 3 28-OCT-20 6YG0 1 JRNL REVDAT 2 02-SEP-20 6YG0 1 JRNL REVDAT 1 12-AUG-20 6YG0 0 JRNL AUTH M.SCHRODER,L.TAN,J.WANG,Y.LIANG,N.S.GRAY,S.KNAPP,A.CHAIKUAD JRNL TITL CATALYTIC DOMAIN PLASTICITY OF MKK7 REVEALS STRUCTURAL JRNL TITL 2 MECHANISMS OF ALLOSTERIC ACTIVATION AND DIVERSE TARGETING JRNL TITL 3 OPPORTUNITIES. JRNL REF CELL CHEM BIOL V. 27 1285 2020 JRNL REFN ESSN 2451-9456 JRNL PMID 32783966 JRNL DOI 10.1016/J.CHEMBIOL.2020.07.014 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1212 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1728 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2229 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 89 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : 2.66000 REMARK 3 B33 (A**2) : -2.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.073 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2272 ; 0.015 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2120 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3053 ; 1.442 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4972 ; 0.950 ; 1.639 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 277 ; 6.897 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;32.999 ;22.087 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;16.156 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;21.010 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 290 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2500 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 408 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5727 0.7323 43.1404 REMARK 3 T TENSOR REMARK 3 T11: 0.0531 T22: 0.0515 REMARK 3 T33: 0.0229 T12: 0.0155 REMARK 3 T13: 0.0057 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 3.7710 L22: 7.2249 REMARK 3 L33: 4.8383 L12: -0.9905 REMARK 3 L13: -0.7705 L23: -1.3174 REMARK 3 S TENSOR REMARK 3 S11: 0.0541 S12: 0.0187 S13: 0.0596 REMARK 3 S21: -0.2116 S22: 0.1403 S23: 0.0793 REMARK 3 S31: -0.2234 S32: 0.0128 S33: -0.1944 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 166 A 316 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8223 -7.0684 30.0382 REMARK 3 T TENSOR REMARK 3 T11: 0.0945 T22: 0.0370 REMARK 3 T33: 0.0549 T12: 0.0208 REMARK 3 T13: 0.0223 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 2.6728 L22: 0.9533 REMARK 3 L33: 0.7008 L12: 1.5922 REMARK 3 L13: 0.7354 L23: 0.4188 REMARK 3 S TENSOR REMARK 3 S11: -0.0367 S12: 0.1445 S13: 0.0482 REMARK 3 S21: -0.0003 S22: 0.0883 S23: 0.0416 REMARK 3 S31: -0.0731 S32: 0.0725 S33: -0.0516 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 317 A 434 REMARK 3 ORIGIN FOR THE GROUP (A): -20.6219 -18.0512 23.0653 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.0728 REMARK 3 T33: 0.0518 T12: 0.0200 REMARK 3 T13: -0.0102 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 0.2525 L22: 2.8171 REMARK 3 L33: 1.1421 L12: 0.3613 REMARK 3 L13: 0.1124 L23: 0.8622 REMARK 3 S TENSOR REMARK 3 S11: -0.0550 S12: 0.0515 S13: 0.0328 REMARK 3 S21: -0.2446 S22: 0.1247 S23: 0.2181 REMARK 3 S31: -0.0238 S32: 0.0256 S33: -0.0697 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6YG0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24828 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 36.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.95200 REMARK 200 R SYM FOR SHELL (I) : 0.95200 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2DYL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG3350, 0.25 M AMMONIUM ACETATE, REMARK 280 0.1 M TRIS, PH 8.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.18500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.32000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.89500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.32000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.18500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.89500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 115 REMARK 465 MET A 116 REMARK 465 LYS A 117 REMARK 465 ARG A 299 REMARK 465 LEU A 300 REMARK 465 VAL A 301 REMARK 465 ASP A 302 REMARK 465 ASP A 303 REMARK 465 LYS A 304 REMARK 465 ALA A 305 REMARK 465 LYS A 306 REMARK 465 ASP A 307 REMARK 465 ARG A 308 REMARK 465 SER A 309 REMARK 465 ALA A 310 REMARK 465 GLY A 311 REMARK 465 CYS A 312 REMARK 465 ASP A 325 REMARK 465 PRO A 326 REMARK 465 THR A 327 REMARK 465 LYS A 328 REMARK 465 PRO A 329 REMARK 465 ASP A 330 REMARK 465 TYR A 331 REMARK 465 SER A 435 REMARK 465 PRO A 436 REMARK 465 ARG A 437 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 144 OG REMARK 470 THR A 146 OG1 CG2 REMARK 470 CYS A 147 SG REMARK 470 ASP A 332 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 146 -77.18 -154.01 REMARK 500 CYS A 147 -148.61 -83.60 REMARK 500 ASP A 259 65.76 -159.59 REMARK 500 LEU A 393 35.44 -92.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 154 0.10 SIDE CHAIN REMARK 500 ARG A 169 0.08 SIDE CHAIN REMARK 500 ARG A 270 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 6YG0 A 116 437 UNP O14733 MP2K7_HUMAN 116 421 SEQADV 6YG0 SER A 115 UNP O14733 EXPRESSION TAG SEQADV 6YG0 ASP A 303 UNP O14733 SER 271 ENGINEERED MUTATION SEQADV 6YG0 ASP A 307 UNP O14733 THR 275 ENGINEERED MUTATION SEQRES 1 A 307 SER MET LYS GLN THR GLY TYR LEU THR ILE GLY GLY GLN SEQRES 2 A 307 ARG TYR GLN ALA GLU ILE ASN ASP LEU GLU ASN LEU GLY SEQRES 3 A 307 GLU MET GLY SER GLY THR CYS GLY GLN VAL TRP LYS MET SEQRES 4 A 307 ARG PHE ARG LYS THR GLY HIS VAL ILE ALA VAL LYS GLN SEQRES 5 A 307 MET ARG ARG SER GLY ASN LYS GLU GLU ASN LYS ARG ILE SEQRES 6 A 307 LEU MET ASP LEU ASP VAL VAL LEU LYS SER HIS ASP CYS SEQRES 7 A 307 PRO TYR ILE VAL GLN CYS PHE GLY THR PHE ILE THR ASN SEQRES 8 A 307 THR ASP VAL PHE ILE ALA MET GLU LEU MET GLY THR CYS SEQRES 9 A 307 ALA GLU LYS LEU LYS LYS ARG MET GLN GLY PRO ILE PRO SEQRES 10 A 307 GLU ARG ILE LEU GLY LYS MET THR VAL ALA ILE VAL LYS SEQRES 11 A 307 ALA LEU TYR TYR LEU LYS GLU LYS HIS GLY VAL ILE HIS SEQRES 12 A 307 ARG ASP VAL LYS PRO SER ASN ILE LEU LEU ASP GLU ARG SEQRES 13 A 307 GLY GLN ILE LYS LEU CYS ASP PHE GLY ILE SER GLY ARG SEQRES 14 A 307 LEU VAL ASP ASP LYS ALA LYS ASP ARG SER ALA GLY CYS SEQRES 15 A 307 ALA ALA TYR MET ALA PRO GLU ARG ILE ASP PRO PRO ASP SEQRES 16 A 307 PRO THR LYS PRO ASP TYR ASP ILE ARG ALA ASP VAL TRP SEQRES 17 A 307 SER LEU GLY ILE SER LEU VAL GLU LEU ALA THR GLY GLN SEQRES 18 A 307 PHE PRO TYR LYS ASN CYS LYS THR ASP PHE GLU VAL LEU SEQRES 19 A 307 THR LYS VAL LEU GLN GLU GLU PRO PRO LEU LEU PRO GLY SEQRES 20 A 307 HIS MET GLY PHE SER GLY ASP PHE GLN SER PHE VAL LYS SEQRES 21 A 307 ASP CYS LEU THR LYS ASP HIS ARG LYS ARG PRO LYS TYR SEQRES 22 A 307 ASN LYS LEU LEU GLU HIS SER PHE ILE LYS ARG TYR GLU SEQRES 23 A 307 THR LEU GLU VAL ASP VAL ALA SER TRP PHE LYS ASP VAL SEQRES 24 A 307 MET ALA LYS THR GLU SER PRO ARG FORMUL 2 HOH *89(H2 O) HELIX 1 AA1 GLU A 132 ASN A 134 5 3 HELIX 2 AA2 ASN A 172 SER A 189 1 18 HELIX 3 AA3 ALA A 219 GLN A 227 1 9 HELIX 4 AA4 PRO A 231 GLY A 254 1 24 HELIX 5 AA5 LYS A 261 SER A 263 5 3 HELIX 6 AA6 ALA A 317 ASP A 322 1 6 HELIX 7 AA7 ILE A 333 GLY A 350 1 18 HELIX 8 AA8 THR A 359 GLU A 370 1 12 HELIX 9 AA9 SER A 382 LEU A 393 1 12 HELIX 10 AB1 LYS A 402 LEU A 407 1 6 HELIX 11 AB2 HIS A 409 LEU A 418 1 10 HELIX 12 AB3 ASP A 421 LYS A 432 1 12 SHEET 1 AA1 2 TYR A 121 ILE A 124 0 SHEET 2 AA1 2 GLN A 127 GLN A 130 -1 O TYR A 129 N LEU A 122 SHEET 1 AA2 5 LEU A 136 GLU A 141 0 SHEET 2 AA2 5 VAL A 150 PHE A 155 -1 O LYS A 152 N LEU A 139 SHEET 3 AA2 5 VAL A 161 ARG A 168 -1 O VAL A 164 N TRP A 151 SHEET 4 AA2 5 ASP A 207 MET A 212 -1 O VAL A 208 N MET A 167 SHEET 5 AA2 5 CYS A 198 ILE A 203 -1 N PHE A 202 O PHE A 209 SHEET 1 AA3 3 THR A 217 CYS A 218 0 SHEET 2 AA3 3 ILE A 265 LEU A 267 -1 O LEU A 267 N THR A 217 SHEET 3 AA3 3 ILE A 273 LEU A 275 -1 O LYS A 274 N LEU A 266 CRYST1 60.370 69.790 84.640 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016565 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011815 0.00000