HEADER TRANSFERASE 27-MAR-20 6YG7 TITLE CRYSTAL STRUCTURE OF MKK7 (MAP2K7) COVALENTLY BOUND WITH TYPE-II TITLE 2 INHIBITOR SB1-G-23 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 7; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAPKK 7,JNK-ACTIVATING KINASE 2,MAPK/ERK KINASE 7,MEK 7, COMPND 5 STRESS-ACTIVATED PROTEIN KINASE KINASE 4,SAPKK4,C-JUN N-TERMINAL COMPND 6 KINASE KINASE 2,JNKK 2; COMPND 7 EC: 2.7.12.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP2K7, JNKK2, MEK7, MKK7, PRKMK7, SKK4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNI28-BSA4 KEYWDS KINASE, KINASE INHIBITOR, MKK7, MEK7, MAP2K7, MAP2K, MEK, JNK KEYWDS 2 SIGNALING, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,L.TAN,J.WANG,Y.LIANG,N.S.GRAY,S.KNAPP,STRUCTURAL GENOMICS AUTHOR 2 CONSORTIUM (SGC) REVDAT 5 24-JAN-24 6YG7 1 REMARK REVDAT 4 28-OCT-20 6YG7 1 JRNL REVDAT 3 02-SEP-20 6YG7 1 JRNL REVDAT 2 19-AUG-20 6YG7 1 REMARK REVDAT 1 12-AUG-20 6YG7 0 JRNL AUTH M.SCHRODER,L.TAN,J.WANG,Y.LIANG,N.S.GRAY,S.KNAPP,A.CHAIKUAD JRNL TITL CATALYTIC DOMAIN PLASTICITY OF MKK7 REVEALS STRUCTURAL JRNL TITL 2 MECHANISMS OF ALLOSTERIC ACTIVATION AND DIVERSE TARGETING JRNL TITL 3 OPPORTUNITIES. JRNL REF CELL CHEM BIOL V. 27 1285 2020 JRNL REFN ESSN 2451-9456 JRNL PMID 32783966 JRNL DOI 10.1016/J.CHEMBIOL.2020.07.014 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1646 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2252 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4425 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.87000 REMARK 3 B22 (A**2) : 2.42000 REMARK 3 B33 (A**2) : -1.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.289 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.198 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.312 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4639 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4505 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6242 ; 1.472 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10370 ; 1.076 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 554 ; 6.556 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;32.194 ;23.668 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 842 ;15.123 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;19.101 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 673 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5317 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1034 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 119 419 B 119 419 34254 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7978 -17.3383 17.8323 REMARK 3 T TENSOR REMARK 3 T11: 0.2198 T22: 0.1377 REMARK 3 T33: 0.1900 T12: -0.0837 REMARK 3 T13: -0.1243 T23: 0.1368 REMARK 3 L TENSOR REMARK 3 L11: 6.0902 L22: 7.6895 REMARK 3 L33: 3.9279 L12: -0.7255 REMARK 3 L13: -1.2192 L23: 2.6996 REMARK 3 S TENSOR REMARK 3 S11: 0.3395 S12: -0.4840 S13: -0.1226 REMARK 3 S21: 0.6808 S22: -0.2461 S23: -0.7225 REMARK 3 S31: 0.0127 S32: 0.1909 S33: -0.0934 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 181 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5036 -2.6052 10.2573 REMARK 3 T TENSOR REMARK 3 T11: 0.1235 T22: 0.1306 REMARK 3 T33: 0.1982 T12: -0.0122 REMARK 3 T13: -0.0075 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 0.6463 L22: 4.2382 REMARK 3 L33: 2.3070 L12: 0.7061 REMARK 3 L13: 0.3021 L23: -2.3846 REMARK 3 S TENSOR REMARK 3 S11: 0.1025 S12: -0.1359 S13: -0.0228 REMARK 3 S21: 0.0006 S22: -0.0884 S23: 0.0223 REMARK 3 S31: 0.1327 S32: -0.0440 S33: -0.0141 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 355 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5378 14.6158 8.5182 REMARK 3 T TENSOR REMARK 3 T11: 0.4726 T22: 0.3585 REMARK 3 T33: 0.6264 T12: -0.1160 REMARK 3 T13: -0.4247 T23: 0.3725 REMARK 3 L TENSOR REMARK 3 L11: 2.2288 L22: 4.9196 REMARK 3 L33: 2.9080 L12: 0.8989 REMARK 3 L13: -1.8644 L23: 1.0908 REMARK 3 S TENSOR REMARK 3 S11: -0.6121 S12: -0.4964 S13: 0.0917 REMARK 3 S21: 0.0389 S22: -0.0271 S23: 0.3141 REMARK 3 S31: 0.2109 S32: 0.8670 S33: 0.6393 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 356 A 419 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6406 9.8813 -0.7042 REMARK 3 T TENSOR REMARK 3 T11: 0.1400 T22: 0.0147 REMARK 3 T33: 0.1992 T12: -0.0342 REMARK 3 T13: -0.1266 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 2.3070 L22: 3.2820 REMARK 3 L33: 3.8488 L12: -0.8809 REMARK 3 L13: 0.3347 L23: -0.9233 REMARK 3 S TENSOR REMARK 3 S11: -0.1745 S12: 0.0849 S13: 0.2981 REMARK 3 S21: -0.4108 S22: 0.0883 S23: 0.3303 REMARK 3 S31: -0.1828 S32: -0.0731 S33: 0.0862 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 121 B 168 REMARK 3 ORIGIN FOR THE GROUP (A): -30.9932 -23.2945 18.9352 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.1058 REMARK 3 T33: 0.3763 T12: -0.0263 REMARK 3 T13: -0.1032 T23: -0.1002 REMARK 3 L TENSOR REMARK 3 L11: 6.6241 L22: 7.4954 REMARK 3 L33: 7.1667 L12: -0.4535 REMARK 3 L13: -0.6566 L23: -0.6568 REMARK 3 S TENSOR REMARK 3 S11: 0.1754 S12: 0.0584 S13: -1.0063 REMARK 3 S21: -0.1944 S22: -0.1630 S23: 0.8176 REMARK 3 S31: 0.2298 S32: -0.5290 S33: -0.0124 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 169 B 181 REMARK 3 ORIGIN FOR THE GROUP (A): -34.7551 -9.1474 3.2446 REMARK 3 T TENSOR REMARK 3 T11: 0.6658 T22: 0.7238 REMARK 3 T33: 0.6957 T12: 0.1514 REMARK 3 T13: 0.0145 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 24.8677 L22: 1.9121 REMARK 3 L33: 2.0853 L12: 6.8899 REMARK 3 L13: 7.0877 L23: 1.9776 REMARK 3 S TENSOR REMARK 3 S11: -0.4226 S12: 0.3863 S13: 1.5353 REMARK 3 S21: -0.1336 S22: 0.0703 S23: 0.4001 REMARK 3 S31: -0.1590 S32: -0.0791 S33: 0.3523 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 182 B 277 REMARK 3 ORIGIN FOR THE GROUP (A): -24.9679 -6.4816 21.8149 REMARK 3 T TENSOR REMARK 3 T11: 0.1189 T22: 0.0667 REMARK 3 T33: 0.2656 T12: 0.0662 REMARK 3 T13: -0.0537 T23: -0.0860 REMARK 3 L TENSOR REMARK 3 L11: 0.7662 L22: 4.3226 REMARK 3 L33: 2.4018 L12: -1.1694 REMARK 3 L13: -0.2457 L23: 0.4482 REMARK 3 S TENSOR REMARK 3 S11: 0.0729 S12: 0.1475 S13: -0.2230 REMARK 3 S21: -0.0858 S22: -0.0817 S23: 0.0782 REMARK 3 S31: 0.1250 S32: -0.0871 S33: 0.0088 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 278 B 419 REMARK 3 ORIGIN FOR THE GROUP (A): -26.2647 9.2724 26.6072 REMARK 3 T TENSOR REMARK 3 T11: 0.1492 T22: 0.0652 REMARK 3 T33: 0.2099 T12: 0.0472 REMARK 3 T13: -0.1007 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 2.4235 L22: 4.6615 REMARK 3 L33: 2.6005 L12: -1.7074 REMARK 3 L13: 0.5130 L23: -0.0999 REMARK 3 S TENSOR REMARK 3 S11: -0.2008 S12: 0.1853 S13: 0.1685 REMARK 3 S21: 0.1392 S22: -0.0307 S23: -0.2143 REMARK 3 S31: -0.3134 S32: -0.2659 S33: 0.2315 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6YG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32046 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 61.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.77000 REMARK 200 R SYM FOR SHELL (I) : 0.77000 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2DYL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.1 M AMMONIUM ACETATE, REMARK 280 0.1 M TRIS, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.62000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 115 REMARK 465 MET A 116 REMARK 465 LYS A 117 REMARK 465 GLY A 145 REMARK 465 THR A 146 REMARK 465 CYS A 147 REMARK 465 SER A 281 REMARK 465 GLY A 282 REMARK 465 ARG A 283 REMARK 465 LEU A 284 REMARK 465 VAL A 285 REMARK 465 ASP A 286 REMARK 465 ASP A 287 REMARK 465 LYS A 288 REMARK 465 ALA A 289 REMARK 465 LYS A 290 REMARK 465 ASP A 291 REMARK 465 ARG A 292 REMARK 465 SER A 293 REMARK 465 ALA A 294 REMARK 465 GLY A 295 REMARK 465 ASP A 309 REMARK 465 PRO A 310 REMARK 465 THR A 311 REMARK 465 LYS A 312 REMARK 465 PRO A 313 REMARK 465 ASP A 314 REMARK 465 PRO A 420 REMARK 465 ARG A 421 REMARK 465 SER B 115 REMARK 465 MET B 116 REMARK 465 LYS B 117 REMARK 465 GLN B 118 REMARK 465 GLY B 145 REMARK 465 THR B 146 REMARK 465 CYS B 147 REMARK 465 GLY B 282 REMARK 465 ARG B 283 REMARK 465 LEU B 284 REMARK 465 VAL B 285 REMARK 465 ASP B 286 REMARK 465 ASP B 287 REMARK 465 LYS B 288 REMARK 465 ALA B 289 REMARK 465 LYS B 290 REMARK 465 ASP B 291 REMARK 465 ARG B 292 REMARK 465 SER B 293 REMARK 465 ALA B 294 REMARK 465 ASP B 309 REMARK 465 PRO B 310 REMARK 465 THR B 311 REMARK 465 LYS B 312 REMARK 465 PRO B 313 REMARK 465 PRO B 420 REMARK 465 ARG B 421 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 170 OG REMARK 470 ASN A 172 CG OD1 ND2 REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 ILE A 280 CG1 CG2 CD1 REMARK 470 LYS A 342 CG CD CE NZ REMARK 470 SER B 170 OG REMARK 470 ASN B 172 CG OD1 ND2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 GLU B 174 CG CD OE1 OE2 REMARK 470 GLU B 175 CG CD OE1 OE2 REMARK 470 ILE B 280 CG1 CG2 CD1 REMARK 470 SER B 281 OG REMARK 470 ASP B 314 CG OD1 OD2 REMARK 470 LYS B 342 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 270 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 258 -4.60 88.57 REMARK 500 ASP A 259 52.07 -144.80 REMARK 500 ASP A 316 -169.15 -119.77 REMARK 500 ASP A 316 -167.99 -121.00 REMARK 500 LYS A 339 -65.18 -93.39 REMARK 500 LEU A 377 44.38 -93.16 REMARK 500 ARG B 258 -5.07 84.82 REMARK 500 ASP B 259 54.83 -144.85 REMARK 500 TYR B 315 140.33 -176.75 REMARK 500 ASP B 316 -167.90 -121.43 REMARK 500 LYS B 339 -66.79 -100.51 REMARK 500 LEU B 377 42.38 -93.63 REMARK 500 GLU B 418 -52.08 -120.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OQ2 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide OQ2 B 501 and CYS B REMARK 800 218 DBREF 6YG7 A 116 421 UNP O14733 MP2K7_HUMAN 116 421 DBREF 6YG7 B 116 421 UNP O14733 MP2K7_HUMAN 116 421 SEQADV 6YG7 SER A 115 UNP O14733 EXPRESSION TAG SEQADV 6YG7 ASP A 287 UNP O14733 SER 271 ENGINEERED MUTATION SEQADV 6YG7 ASP A 291 UNP O14733 THR 275 ENGINEERED MUTATION SEQADV 6YG7 SER B 115 UNP O14733 EXPRESSION TAG SEQADV 6YG7 ASP B 287 UNP O14733 SER 271 ENGINEERED MUTATION SEQADV 6YG7 ASP B 291 UNP O14733 THR 275 ENGINEERED MUTATION SEQRES 1 A 307 SER MET LYS GLN THR GLY TYR LEU THR ILE GLY GLY GLN SEQRES 2 A 307 ARG TYR GLN ALA GLU ILE ASN ASP LEU GLU ASN LEU GLY SEQRES 3 A 307 GLU MET GLY SER GLY THR CYS GLY GLN VAL TRP LYS MET SEQRES 4 A 307 ARG PHE ARG LYS THR GLY HIS VAL ILE ALA VAL LYS GLN SEQRES 5 A 307 MET ARG ARG SER GLY ASN LYS GLU GLU ASN LYS ARG ILE SEQRES 6 A 307 LEU MET ASP LEU ASP VAL VAL LEU LYS SER HIS ASP CYS SEQRES 7 A 307 PRO TYR ILE VAL GLN CYS PHE GLY THR PHE ILE THR ASN SEQRES 8 A 307 THR ASP VAL PHE ILE ALA MET GLU LEU MET GLY THR CYS SEQRES 9 A 307 ALA GLU LYS LEU LYS LYS ARG MET GLN GLY PRO ILE PRO SEQRES 10 A 307 GLU ARG ILE LEU GLY LYS MET THR VAL ALA ILE VAL LYS SEQRES 11 A 307 ALA LEU TYR TYR LEU LYS GLU LYS HIS GLY VAL ILE HIS SEQRES 12 A 307 ARG ASP VAL LYS PRO SER ASN ILE LEU LEU ASP GLU ARG SEQRES 13 A 307 GLY GLN ILE LYS LEU CYS ASP PHE GLY ILE SER GLY ARG SEQRES 14 A 307 LEU VAL ASP ASP LYS ALA LYS ASP ARG SER ALA GLY CYS SEQRES 15 A 307 ALA ALA TYR MET ALA PRO GLU ARG ILE ASP PRO PRO ASP SEQRES 16 A 307 PRO THR LYS PRO ASP TYR ASP ILE ARG ALA ASP VAL TRP SEQRES 17 A 307 SER LEU GLY ILE SER LEU VAL GLU LEU ALA THR GLY GLN SEQRES 18 A 307 PHE PRO TYR LYS ASN CYS LYS THR ASP PHE GLU VAL LEU SEQRES 19 A 307 THR LYS VAL LEU GLN GLU GLU PRO PRO LEU LEU PRO GLY SEQRES 20 A 307 HIS MET GLY PHE SER GLY ASP PHE GLN SER PHE VAL LYS SEQRES 21 A 307 ASP CYS LEU THR LYS ASP HIS ARG LYS ARG PRO LYS TYR SEQRES 22 A 307 ASN LYS LEU LEU GLU HIS SER PHE ILE LYS ARG TYR GLU SEQRES 23 A 307 THR LEU GLU VAL ASP VAL ALA SER TRP PHE LYS ASP VAL SEQRES 24 A 307 MET ALA LYS THR GLU SER PRO ARG SEQRES 1 B 307 SER MET LYS GLN THR GLY TYR LEU THR ILE GLY GLY GLN SEQRES 2 B 307 ARG TYR GLN ALA GLU ILE ASN ASP LEU GLU ASN LEU GLY SEQRES 3 B 307 GLU MET GLY SER GLY THR CYS GLY GLN VAL TRP LYS MET SEQRES 4 B 307 ARG PHE ARG LYS THR GLY HIS VAL ILE ALA VAL LYS GLN SEQRES 5 B 307 MET ARG ARG SER GLY ASN LYS GLU GLU ASN LYS ARG ILE SEQRES 6 B 307 LEU MET ASP LEU ASP VAL VAL LEU LYS SER HIS ASP CYS SEQRES 7 B 307 PRO TYR ILE VAL GLN CYS PHE GLY THR PHE ILE THR ASN SEQRES 8 B 307 THR ASP VAL PHE ILE ALA MET GLU LEU MET GLY THR CYS SEQRES 9 B 307 ALA GLU LYS LEU LYS LYS ARG MET GLN GLY PRO ILE PRO SEQRES 10 B 307 GLU ARG ILE LEU GLY LYS MET THR VAL ALA ILE VAL LYS SEQRES 11 B 307 ALA LEU TYR TYR LEU LYS GLU LYS HIS GLY VAL ILE HIS SEQRES 12 B 307 ARG ASP VAL LYS PRO SER ASN ILE LEU LEU ASP GLU ARG SEQRES 13 B 307 GLY GLN ILE LYS LEU CYS ASP PHE GLY ILE SER GLY ARG SEQRES 14 B 307 LEU VAL ASP ASP LYS ALA LYS ASP ARG SER ALA GLY CYS SEQRES 15 B 307 ALA ALA TYR MET ALA PRO GLU ARG ILE ASP PRO PRO ASP SEQRES 16 B 307 PRO THR LYS PRO ASP TYR ASP ILE ARG ALA ASP VAL TRP SEQRES 17 B 307 SER LEU GLY ILE SER LEU VAL GLU LEU ALA THR GLY GLN SEQRES 18 B 307 PHE PRO TYR LYS ASN CYS LYS THR ASP PHE GLU VAL LEU SEQRES 19 B 307 THR LYS VAL LEU GLN GLU GLU PRO PRO LEU LEU PRO GLY SEQRES 20 B 307 HIS MET GLY PHE SER GLY ASP PHE GLN SER PHE VAL LYS SEQRES 21 B 307 ASP CYS LEU THR LYS ASP HIS ARG LYS ARG PRO LYS TYR SEQRES 22 B 307 ASN LYS LEU LEU GLU HIS SER PHE ILE LYS ARG TYR GLU SEQRES 23 B 307 THR LEU GLU VAL ASP VAL ALA SER TRP PHE LYS ASP VAL SEQRES 24 B 307 MET ALA LYS THR GLU SER PRO ARG HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET OQ2 A 504 46 HET OQ2 B 501 46 HETNAM EDO 1,2-ETHANEDIOL HETNAM OQ2 ~{N}-[4-[(4-ETHYLPIPERAZIN-1-YL)METHYL]-3- HETNAM 2 OQ2 (TRIFLUOROMETHYL)PHENYL]-4-METHYL-3-[2-[[(3~{R})-1- HETNAM 3 OQ2 PROPANOYLPYRROLIDIN-3-YL]AMINO]PYRIMIDIN-4-YL]OXY- HETNAM 4 OQ2 BENZAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 OQ2 2(C33 H40 F3 N7 O3) FORMUL 8 HOH *72(H2 O) HELIX 1 AA1 GLU A 132 ASN A 134 5 3 HELIX 2 AA2 LYS A 173 GLU A 175 5 3 HELIX 3 AA3 ASN A 176 LYS A 188 1 13 HELIX 4 AA4 ALA A 219 GLN A 227 1 9 HELIX 5 AA5 PRO A 231 GLY A 254 1 24 HELIX 6 AA6 LYS A 261 SER A 263 5 3 HELIX 7 AA7 ALA A 301 ASP A 306 1 6 HELIX 8 AA8 ILE A 317 GLY A 334 1 18 HELIX 9 AA9 THR A 343 GLU A 354 1 12 HELIX 10 AB1 SER A 366 LEU A 377 1 12 HELIX 11 AB2 ASP A 380 ARG A 384 5 5 HELIX 12 AB3 LYS A 386 GLU A 392 1 7 HELIX 13 AB4 HIS A 393 LEU A 402 1 10 HELIX 14 AB5 ASP A 405 LYS A 416 1 12 HELIX 15 AB6 GLU B 132 ASN B 134 5 3 HELIX 16 AB7 LYS B 173 GLU B 175 5 3 HELIX 17 AB8 ASN B 176 LYS B 188 1 13 HELIX 18 AB9 ALA B 219 GLN B 227 1 9 HELIX 19 AC1 PRO B 231 GLY B 254 1 24 HELIX 20 AC2 LYS B 261 SER B 263 5 3 HELIX 21 AC3 ALA B 301 ASP B 306 1 6 HELIX 22 AC4 ILE B 317 GLY B 334 1 18 HELIX 23 AC5 THR B 343 GLU B 354 1 12 HELIX 24 AC6 SER B 366 LEU B 377 1 12 HELIX 25 AC7 ASP B 380 ARG B 384 5 5 HELIX 26 AC8 LYS B 386 GLU B 392 1 7 HELIX 27 AC9 HIS B 393 LEU B 402 1 10 HELIX 28 AD1 ASP B 405 LYS B 416 1 12 SHEET 1 AA1 2 TYR A 121 ILE A 124 0 SHEET 2 AA1 2 GLN A 127 GLN A 130 -1 O TYR A 129 N LEU A 122 SHEET 1 AA2 5 LEU A 136 GLU A 141 0 SHEET 2 AA2 5 GLN A 149 PHE A 155 -1 O LYS A 152 N LEU A 139 SHEET 3 AA2 5 VAL A 161 ARG A 168 -1 O ILE A 162 N MET A 153 SHEET 4 AA2 5 ASP A 207 GLU A 213 -1 O MET A 212 N ALA A 163 SHEET 5 AA2 5 CYS A 198 ILE A 203 -1 N PHE A 202 O PHE A 209 SHEET 1 AA3 3 THR A 217 CYS A 218 0 SHEET 2 AA3 3 ILE A 265 LEU A 267 -1 O LEU A 267 N THR A 217 SHEET 3 AA3 3 ILE A 273 LEU A 275 -1 O LYS A 274 N LEU A 266 SHEET 1 AA4 2 GLY B 120 ILE B 124 0 SHEET 2 AA4 2 GLN B 127 ALA B 131 -1 O TYR B 129 N LEU B 122 SHEET 1 AA5 5 LEU B 136 GLU B 141 0 SHEET 2 AA5 5 GLN B 149 PHE B 155 -1 O LYS B 152 N LEU B 139 SHEET 3 AA5 5 VAL B 161 ARG B 168 -1 O ILE B 162 N MET B 153 SHEET 4 AA5 5 ASP B 207 GLU B 213 -1 O MET B 212 N ALA B 163 SHEET 5 AA5 5 CYS B 198 ILE B 203 -1 N PHE B 202 O PHE B 209 SHEET 1 AA6 3 THR B 217 CYS B 218 0 SHEET 2 AA6 3 ILE B 265 LEU B 267 -1 O LEU B 267 N THR B 217 SHEET 3 AA6 3 ILE B 273 LEU B 275 -1 O LYS B 274 N LEU B 266 SSBOND 1 CYS A 296 CYS A 341 1555 1555 2.04 SSBOND 2 CYS B 296 CYS B 341 1555 1555 2.08 LINK SG CYS A 218 C24 OQ2 A 504 1555 1555 1.62 LINK SG CYS B 218 C24 OQ2 B 501 1555 1555 1.62 SITE 1 AC1 3 ASN A 138 PHE A 209 EDO A 502 SITE 1 AC2 2 ASN A 138 EDO A 501 SITE 1 AC3 3 GLU A 232 ARG A 398 TYR A 399 SITE 1 AC4 14 LYS A 165 ASP A 182 VAL A 196 MET A 212 SITE 2 AC4 14 GLU A 213 MET A 215 CYS A 218 LYS A 221 SITE 3 AC4 14 ILE A 256 HIS A 257 LEU A 275 CYS A 276 SITE 4 AC4 14 ASP A 277 PHE A 278 SITE 1 AC5 21 LYS B 165 ASP B 182 VAL B 196 MET B 212 SITE 2 AC5 21 GLU B 213 MET B 215 THR B 217 ALA B 219 SITE 3 AC5 21 GLU B 220 LYS B 221 LEU B 222 VAL B 255 SITE 4 AC5 21 ILE B 256 HIS B 257 ARG B 258 SER B 263 SITE 5 AC5 21 ILE B 265 LEU B 275 CYS B 276 ASP B 277 SITE 6 AC5 21 PHE B 278 CRYST1 72.070 69.240 72.250 90.00 117.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013875 0.000000 0.007353 0.00000 SCALE2 0.000000 0.014443 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015664 0.00000