HEADER TRANSFERASE 28-MAR-20 6YGZ TITLE TRNA GUANINE TRANSGLYCOSYLASE (TGT) LABELLED WITH 5-FLUORO-TRYPTOPHAN TITLE 2 IN CO-CRYSTALLIZED COMPLEX WITH 6-AMINO-4-(2-PHENYLETHYL)-1,7- TITLE 3 DIHYDRO-8H-IMIDAZO[4,5-G]QUINAZOLIN-8-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME,TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS ZM4 = ATCC SOURCE 3 31821; SOURCE 4 ORGANISM_TAXID: 264203; SOURCE 5 GENE: TGT, ZMO0363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HOMODIMER, 19F NMR, TRNA, TGT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.NGUYEN,A.HEINE,G.KLEBE REVDAT 2 24-JAN-24 6YGZ 1 REMARK REVDAT 1 08-APR-20 6YGZ 0 JRNL AUTH A.NGUYEN,A.HEINE,G.KLEBE JRNL TITL CO-CRYSTALLIZATION, 19F NMR AND NANOESI-MS REVEAL DIMER JRNL TITL 2 DISTURBING INHIBITORS AND CONFORMATIONAL CHANGES AT DIMER JRNL TITL 3 CONTACTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 30350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1517 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.5600 - 4.1300 0.98 2840 150 0.1679 0.1963 REMARK 3 2 4.1300 - 3.2800 0.95 2688 142 0.1690 0.1871 REMARK 3 3 3.2800 - 2.8700 0.99 2798 147 0.1823 0.2280 REMARK 3 4 2.8700 - 2.6000 0.99 2804 147 0.1919 0.2392 REMARK 3 5 2.6000 - 2.4200 1.00 2792 147 0.1874 0.2334 REMARK 3 6 2.4200 - 2.2700 1.00 2827 149 0.1852 0.2201 REMARK 3 7 2.2700 - 2.1600 0.86 2387 126 0.3275 0.3790 REMARK 3 8 2.1600 - 2.0700 0.92 2583 136 0.2786 0.3198 REMARK 3 9 2.0700 - 1.9900 0.94 2647 139 0.3401 0.4543 REMARK 3 10 1.9900 - 1.9200 0.83 2328 122 0.3522 0.3180 REMARK 3 11 1.9200 - 1.8600 0.77 2139 112 0.5781 0.5786 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.302 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.289 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2761 REMARK 3 ANGLE : 0.861 3739 REMARK 3 CHIRALITY : 0.052 392 REMARK 3 PLANARITY : 0.006 526 REMARK 3 DIHEDRAL : 14.907 1648 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 101.9823 -4.1401 22.2909 REMARK 3 T TENSOR REMARK 3 T11: 0.2273 T22: 0.1912 REMARK 3 T33: 0.2405 T12: 0.0162 REMARK 3 T13: -0.0042 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.0930 L22: 0.0895 REMARK 3 L33: 0.1732 L12: -0.0434 REMARK 3 L13: 0.0324 L23: -0.1658 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: -0.0495 S13: -0.1337 REMARK 3 S21: 0.1387 S22: 0.0540 S23: 0.0525 REMARK 3 S31: 0.3168 S32: 0.0294 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.7322 9.9339 18.8359 REMARK 3 T TENSOR REMARK 3 T11: 0.1480 T22: 0.1783 REMARK 3 T33: 0.1470 T12: 0.0252 REMARK 3 T13: -0.0225 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.2678 L22: 0.0867 REMARK 3 L33: 0.2870 L12: -0.0029 REMARK 3 L13: 0.3146 L23: 0.0224 REMARK 3 S TENSOR REMARK 3 S11: -0.0603 S12: 0.0505 S13: 0.0931 REMARK 3 S21: -0.0012 S22: -0.0074 S23: -0.0466 REMARK 3 S31: -0.0199 S32: -0.1640 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.6640 15.4485 21.6123 REMARK 3 T TENSOR REMARK 3 T11: 0.2952 T22: 0.1673 REMARK 3 T33: 0.2646 T12: 0.0506 REMARK 3 T13: -0.0429 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.3056 L22: 0.4006 REMARK 3 L33: 0.2648 L12: 0.1074 REMARK 3 L13: 0.0606 L23: 0.0846 REMARK 3 S TENSOR REMARK 3 S11: -0.0619 S12: 0.0105 S13: 0.0385 REMARK 3 S21: -0.2870 S22: 0.1412 S23: -0.2064 REMARK 3 S31: -0.2868 S32: -0.1989 S33: 0.0299 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 103.3899 14.1139 27.8717 REMARK 3 T TENSOR REMARK 3 T11: 0.1795 T22: 0.1647 REMARK 3 T33: 0.1710 T12: 0.0106 REMARK 3 T13: -0.0018 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.3320 L22: 1.0188 REMARK 3 L33: 1.1525 L12: -0.2606 REMARK 3 L13: 0.1766 L23: 0.4965 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: -0.1268 S13: 0.0255 REMARK 3 S21: -0.0149 S22: 0.0341 S23: -0.0976 REMARK 3 S31: -0.1659 S32: 0.0561 S33: -0.0004 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 101.6295 12.2821 3.2872 REMARK 3 T TENSOR REMARK 3 T11: 0.2410 T22: 0.2137 REMARK 3 T33: 0.2261 T12: 0.0016 REMARK 3 T13: -0.0186 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: -0.0069 L22: 0.0072 REMARK 3 L33: 0.3540 L12: 0.0483 REMARK 3 L13: 0.2129 L23: -0.1560 REMARK 3 S TENSOR REMARK 3 S11: -0.0301 S12: -0.0420 S13: 0.0668 REMARK 3 S21: 0.1567 S22: 0.2371 S23: 0.1809 REMARK 3 S31: -0.5577 S32: -0.1801 S33: 0.0062 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.8267 8.9278 -10.2944 REMARK 3 T TENSOR REMARK 3 T11: 0.2509 T22: 0.2128 REMARK 3 T33: 0.2164 T12: 0.0038 REMARK 3 T13: -0.0022 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.3190 L22: 0.1553 REMARK 3 L33: 0.1322 L12: 0.1374 REMARK 3 L13: 0.0472 L23: 0.1338 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: 0.1123 S13: -0.0257 REMARK 3 S21: -0.2566 S22: 0.0125 S23: -0.1990 REMARK 3 S31: 0.1925 S32: 0.1836 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 340 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 106.5191 3.2852 4.1864 REMARK 3 T TENSOR REMARK 3 T11: 0.1824 T22: 0.2411 REMARK 3 T33: 0.1826 T12: 0.0417 REMARK 3 T13: 0.0382 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.2757 L22: 0.0966 REMARK 3 L33: 0.3254 L12: 0.2258 REMARK 3 L13: 0.1294 L23: -0.0875 REMARK 3 S TENSOR REMARK 3 S11: 0.1159 S12: 0.3830 S13: -0.0860 REMARK 3 S21: -0.1164 S22: -0.0320 S23: -0.0665 REMARK 3 S31: 0.0101 S32: 0.0438 S33: 0.0537 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YGZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107594. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DCM SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31999 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 35.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1PUD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 5.5, 0.5 MM DTT, 10% REMARK 280 (V/V) DMSO, 13% (M/V) PEG8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.40000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.45200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.40000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.45200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 169.60000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 ALA A 49 REMARK 465 THR A 50 REMARK 465 VAL A 51 REMARK 465 LYS A 52 REMARK 465 ALA A 53 REMARK 465 LEU A 54 REMARK 465 LYS A 55 REMARK 465 PRO A 56 REMARK 465 GLU A 57 REMARK 465 THR A 58 REMARK 465 VAL A 59 REMARK 465 ARG A 60 REMARK 465 ALA A 61 REMARK 465 THR A 62 REMARK 465 SER A 126 REMARK 465 HIS A 127 REMARK 465 LEU A 128 REMARK 465 ASP A 129 REMARK 465 GLY A 130 REMARK 465 SER A 131 REMARK 465 ARG A 132 REMARK 465 HIS A 133 REMARK 465 ARG A 384 REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 LYS A 33 NZ REMARK 470 THR A 47 OG1 CG2 REMARK 470 MET A 75 CE REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 82 CD NE CZ NH1 NH2 REMARK 470 LYS A 85 NZ REMARK 470 MET A 109 CE REMARK 470 LEU A 111 CG CD1 CD2 REMARK 470 SER A 112 OG REMARK 470 SER A 113 OG REMARK 470 LEU A 114 CG CD1 CD2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 191 CD OE1 OE2 REMARK 470 LYS A 264 CE NZ REMARK 470 VAL A 282 CG1 CG2 REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 289 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 306 NE CZ NH1 NH2 REMARK 470 LYS A 312 CE NZ REMARK 470 SER A 316 OG REMARK 470 GLU A 317 OE1 OE2 REMARK 470 VAL A 322 CG1 CG2 REMARK 470 GLN A 324 CG CD OE1 NE2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 ILE A 340 CG2 REMARK 470 LEU A 341 CD1 CD2 REMARK 470 MET A 344 CG SD CE REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 LYS A 360 CD CE NZ REMARK 470 GLN A 375 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 47 9.11 -66.51 REMARK 500 GLN A 203 -163.37 -123.06 REMARK 500 SER A 205 -137.39 58.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 107.6 REMARK 620 3 CYS A 323 SG 111.0 116.7 REMARK 620 4 HIS A 349 ND1 105.6 116.9 98.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NE8 A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6YGR RELATED DB: PDB DBREF 6YGZ A 1 386 UNP P28720 TGT_ZYMMO 1 386 SEQADV 6YGZ GLY A -1 UNP P28720 EXPRESSION TAG SEQADV 6YGZ SER A 0 UNP P28720 EXPRESSION TAG SEQADV 6YGZ LYS A 312 UNP P28720 THR 312 ENGINEERED MUTATION SEQRES 1 A 388 GLY SER MET VAL GLU ALA THR ALA GLN GLU THR ASP ARG SEQRES 2 A 388 PRO ARG PHE SER PHE SER ILE ALA ALA ARG GLU GLY LYS SEQRES 3 A 388 ALA ARG THR GLY THR ILE GLU MET LYS ARG GLY VAL ILE SEQRES 4 A 388 ARG THR PRO ALA PHE MET PRO VAL GLY THR ALA ALA THR SEQRES 5 A 388 VAL LYS ALA LEU LYS PRO GLU THR VAL ARG ALA THR GLY SEQRES 6 A 388 ALA ASP ILE ILE LEU GLY ASN THR TYR HIS LEU MET LEU SEQRES 7 A 388 ARG PRO GLY ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU SEQRES 8 A 388 HIS SER PHE MET GLY FTR ASP ARG PRO ILE LEU THR ASP SEQRES 9 A 388 SER GLY GLY TYR GLN VAL MET SER LEU SER SER LEU THR SEQRES 10 A 388 LYS GLN SER GLU GLU GLY VAL THR PHE LYS SER HIS LEU SEQRES 11 A 388 ASP GLY SER ARG HIS MET LEU SER PRO GLU ARG SER ILE SEQRES 12 A 388 GLU ILE GLN HIS LEU LEU GLY SER ASP ILE VAL MET ALA SEQRES 13 A 388 PHE ASP GLU CYS THR PRO TYR PRO ALA THR PRO SER ARG SEQRES 14 A 388 ALA ALA SER SER MET GLU ARG SER MET ARG FTR ALA LYS SEQRES 15 A 388 ARG SER ARG ASP ALA PHE ASP SER ARG LYS GLU GLN ALA SEQRES 16 A 388 GLU ASN ALA ALA LEU PHE GLY ILE GLN GLN GLY SER VAL SEQRES 17 A 388 PHE GLU ASN LEU ARG GLN GLN SER ALA ASP ALA LEU ALA SEQRES 18 A 388 GLU ILE GLY PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA SEQRES 19 A 388 VAL GLY GLU GLY GLN ASP GLU MET PHE ARG VAL LEU ASP SEQRES 20 A 388 PHE SER VAL PRO MET LEU PRO ASP ASP LYS PRO HIS TYR SEQRES 21 A 388 LEU MET GLY VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA SEQRES 22 A 388 VAL GLU ARG GLY ILE ASP MET PHE ASP CYS VAL LEU PRO SEQRES 23 A 388 THR ARG SER GLY ARG ASN GLY GLN ALA PHE THR FTR ASP SEQRES 24 A 388 GLY PRO ILE ASN ILE ARG ASN ALA ARG PHE SER GLU ASP SEQRES 25 A 388 LEU LYS PRO LEU ASP SER GLU CYS HIS CYS ALA VAL CYS SEQRES 26 A 388 GLN LYS FTR SER ARG ALA TYR ILE HIS HIS LEU ILE ARG SEQRES 27 A 388 ALA GLY GLU ILE LEU GLY ALA MET LEU MET THR GLU HIS SEQRES 28 A 388 ASN ILE ALA PHE TYR GLN GLN LEU MET GLN LYS ILE ARG SEQRES 29 A 388 ASP SER ILE SER GLU GLY ARG PHE SER GLN PHE ALA GLN SEQRES 30 A 388 ASP PHE ARG ALA ARG TYR PHE ALA ARG ASN SER MODRES 6YGZ FTR A 95 TRP MODIFIED RESIDUE MODRES 6YGZ FTR A 178 TRP MODIFIED RESIDUE MODRES 6YGZ FTR A 296 TRP MODIFIED RESIDUE MODRES 6YGZ FTR A 326 TRP MODIFIED RESIDUE HET FTR A 95 15 HET FTR A 178 15 HET FTR A 296 15 HET FTR A 326 15 HET ZN A 401 1 HET NE8 A 402 23 HETNAM FTR FLUOROTRYPTOPHANE HETNAM ZN ZINC ION HETNAM NE8 6-AMINO-4-(2-PHENYLETHYL)-1,7-DIHYDRO-8H-IMIDAZO[4,5- HETNAM 2 NE8 G]QUINAZOLIN-8-ONE FORMUL 1 FTR 4(C11 H11 F N2 O2) FORMUL 2 ZN ZN 2+ FORMUL 3 NE8 C17 H15 N5 O FORMUL 4 HOH *170(H2 O) HELIX 1 AA1 ASN A 70 ARG A 77 1 8 HELIX 2 AA2 GLY A 79 LEU A 86 1 8 HELIX 3 AA3 GLY A 88 GLY A 94 1 7 HELIX 4 AA4 GLY A 104 SER A 112 1 9 HELIX 5 AA5 SER A 136 GLY A 148 1 13 HELIX 6 AA6 THR A 164 SER A 188 1 25 HELIX 7 AA7 ARG A 189 ALA A 196 1 8 HELIX 8 AA8 PHE A 207 GLY A 222 1 16 HELIX 9 AA9 GLY A 236 VAL A 248 1 13 HELIX 10 AB1 PRO A 249 LEU A 251 5 3 HELIX 11 AB2 LYS A 264 GLU A 273 1 10 HELIX 12 AB3 VAL A 282 ASN A 290 1 9 HELIX 13 AB4 ASN A 304 SER A 308 5 5 HELIX 14 AB5 CYS A 320 FTR A 326 1 7 HELIX 15 AB6 SER A 327 ALA A 337 1 11 HELIX 16 AB7 GLU A 339 GLU A 367 1 29 HELIX 17 AB8 ARG A 369 ALA A 383 1 15 SHEET 1 AA1 3 SER A 15 GLU A 22 0 SHEET 2 AA1 3 ALA A 25 MET A 32 -1 O GLU A 31 N SER A 15 SHEET 3 AA1 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 AA2 8 ALA A 41 PHE A 42 0 SHEET 2 AA2 8 MET A 278 PHE A 279 1 O PHE A 279 N ALA A 41 SHEET 3 AA2 8 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 AA2 8 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 AA2 8 ALA A 197 GLN A 202 1 N GLN A 202 O ALA A 227 SHEET 6 AA2 8 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 AA2 8 ILE A 99 THR A 101 1 N ILE A 99 O ILE A 151 SHEET 8 AA2 8 ILE A 67 GLY A 69 1 N GLY A 69 O LEU A 100 SHEET 1 AA3 2 SER A 113 GLN A 117 0 SHEET 2 AA3 2 VAL A 122 LYS A 125 -1 O THR A 123 N LYS A 116 SHEET 1 AA4 2 GLN A 292 ALA A 293 0 SHEET 2 AA4 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK C GLY A 94 N FTR A 95 1555 1555 1.33 LINK C FTR A 95 N ASP A 96 1555 1555 1.33 LINK C ARG A 177 N FTR A 178 1555 1555 1.33 LINK C FTR A 178 N ALA A 179 1555 1555 1.33 LINK C THR A 295 N FTR A 296 1555 1555 1.32 LINK C FTR A 296 N ASP A 297 1555 1555 1.34 LINK C LYS A 325 N FTR A 326 1555 1555 1.33 LINK C FTR A 326 N SER A 327 1555 1555 1.33 LINK SG CYS A 318 ZN ZN A 401 1555 1555 2.39 LINK SG CYS A 320 ZN ZN A 401 1555 1555 2.23 LINK SG CYS A 323 ZN ZN A 401 1555 1555 2.27 LINK ND1 HIS A 349 ZN ZN A 401 1555 1555 2.19 CISPEP 1 THR A 39 PRO A 40 0 1.02 CISPEP 2 ARG A 77 PRO A 78 0 -0.08 CISPEP 3 TYR A 161 PRO A 162 0 2.29 CISPEP 4 VAL A 262 GLY A 263 0 8.03 SITE 1 AC1 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC2 14 ASP A 102 TYR A 106 ASP A 156 CYS A 158 SITE 2 AC2 14 ILE A 201 GLN A 203 GLY A 229 GLY A 230 SITE 3 AC2 14 LEU A 231 ALA A 232 TYR A 258 MET A 260 SITE 4 AC2 14 GLY A 261 ASP A 280 CRYST1 84.800 64.904 71.299 90.00 94.14 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011792 0.000000 0.000853 0.00000 SCALE2 0.000000 0.015407 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014062 0.00000