HEADER HYDROLASE 01-APR-20 6YI6 TITLE STRUCTURAL AND KINETIC EVALUATION OF PHOSPHORAMIDATE INHIBITORS ON TITLE 2 THERMOLYSIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: NEUTRAL PROTEASE; COMPND 5 EC: 3.4.24.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: NPRS, NPRM; SOURCE 5 EXPRESSION_SYSTEM: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1422 KEYWDS PHOSPHORAMIDATE INHIBITOR, PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KLJAJIC,A.HEINE,G.KLEBE REVDAT 2 24-JAN-24 6YI6 1 REMARK REVDAT 1 14-APR-21 6YI6 0 JRNL AUTH M.KLJAJIC,H.-D.GERBER,A.HEINE,G.KLEBE JRNL TITL STRUCTURAL AND KINETIC EVALUATION OF PHOSPHORAMIDATE JRNL TITL 2 INHIBITORS ON THERMOLYSIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 60245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.120 REMARK 3 R VALUE (WORKING SET) : 0.119 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.3200 - 4.0300 0.99 2849 150 0.1665 0.1864 REMARK 3 2 4.0300 - 3.2000 1.00 2703 142 0.1356 0.1427 REMARK 3 3 3.2000 - 2.8000 1.00 2656 140 0.1204 0.1585 REMARK 3 4 2.8000 - 2.5400 1.00 2654 140 0.1151 0.1240 REMARK 3 5 2.5400 - 2.3600 1.00 2609 137 0.1070 0.1345 REMARK 3 6 2.3600 - 2.2200 1.00 2614 138 0.1042 0.1247 REMARK 3 7 2.2200 - 2.1100 1.00 2599 136 0.1038 0.1307 REMARK 3 8 2.1100 - 2.0200 1.00 2612 138 0.1011 0.1376 REMARK 3 9 2.0200 - 1.9400 1.00 2591 135 0.1089 0.1337 REMARK 3 10 1.9400 - 1.8700 1.00 2586 136 0.1024 0.1501 REMARK 3 11 1.8700 - 1.8100 1.00 2559 135 0.0982 0.1470 REMARK 3 12 1.8100 - 1.7600 1.00 2590 136 0.0919 0.1422 REMARK 3 13 1.7600 - 1.7200 1.00 2571 136 0.0951 0.1457 REMARK 3 14 1.7200 - 1.6700 1.00 2579 135 0.0979 0.1379 REMARK 3 15 1.6700 - 1.6400 1.00 2563 135 0.0953 0.1497 REMARK 3 16 1.6400 - 1.6000 1.00 2552 135 0.0996 0.1384 REMARK 3 17 1.6000 - 1.5700 1.00 2570 135 0.1020 0.1526 REMARK 3 18 1.5700 - 1.5400 1.00 2563 135 0.1012 0.1584 REMARK 3 19 1.5400 - 1.5100 1.00 2555 134 0.1141 0.1490 REMARK 3 20 1.5100 - 1.4900 1.00 2560 135 0.1194 0.1707 REMARK 3 21 1.4900 - 1.4600 1.00 2557 134 0.1197 0.1893 REMARK 3 22 1.4600 - 1.4400 0.99 2542 134 0.1321 0.1835 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.104 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.957 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2624 REMARK 3 ANGLE : 0.946 3583 REMARK 3 CHIRALITY : 0.077 381 REMARK 3 PLANARITY : 0.006 496 REMARK 3 DIHEDRAL : 16.252 934 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YI6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107583. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60277 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 46.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.04 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 19.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50700 REMARK 200 FOR SHELL : 4.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LVD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M CSCL, 50 MM REMARK 280 TRIS(HYDROXYMETHYL)AMINOMETHAN, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.54567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.09133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.31850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.86417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.77283 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.54567 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.09133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.86417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.31850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.77283 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E 771 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE E 1 CD1 REMARK 470 GLN E 61 OE1 NE2 REMARK 470 GLN E 128 CD OE1 NE2 REMARK 470 LYS E 182 CG CD CE NZ REMARK 470 GLN E 225 CD OE1 NE2 REMARK 470 LYS E 265 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER E 25 93.15 -161.24 REMARK 500 THR E 26 -58.19 70.22 REMARK 500 SER E 92 -171.83 60.61 REMARK 500 SER E 107 -162.52 60.57 REMARK 500 ASN E 111 54.36 -91.39 REMARK 500 THR E 152 -101.03 -119.96 REMARK 500 ASN E 159 -141.93 55.34 REMARK 500 THR E 194 75.75 43.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 860 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH E 861 DISTANCE = 6.61 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 57 OD1 REMARK 620 2 ASP E 57 OD2 51.7 REMARK 620 3 ASP E 59 OD1 122.9 71.6 REMARK 620 4 GLN E 61 O 95.7 89.1 88.8 REMARK 620 5 HOH E 568 O 157.1 147.8 76.8 96.5 REMARK 620 6 HOH E 602 O 81.6 131.6 155.0 83.2 80.6 REMARK 620 7 HOH E 768 O 84.4 89.1 89.2 177.7 84.3 99.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 138 OD2 REMARK 620 2 GLU E 177 OE1 77.5 REMARK 620 3 GLU E 177 OE2 126.9 49.6 REMARK 620 4 ASP E 185 OD1 160.3 122.2 72.7 REMARK 620 5 GLU E 187 O 84.0 145.6 141.9 79.4 REMARK 620 6 GLU E 190 OE1 83.7 127.9 122.5 82.4 77.5 REMARK 620 7 GLU E 190 OE2 97.5 82.6 74.2 84.9 128.8 52.2 REMARK 620 8 HOH E 567 O 98.6 79.2 78.2 87.4 75.2 152.2 152.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 142 NE2 REMARK 620 2 HIS E 146 NE2 102.9 REMARK 620 3 GLU E 166 OE2 123.0 95.1 REMARK 620 4 ORK E 412 O 115.2 124.6 96.0 REMARK 620 5 ORK E 412 O 111.2 133.2 92.3 8.9 REMARK 620 6 ORK E 412 O1 94.3 81.9 142.0 57.6 64.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS E 407 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN E 159 OD1 REMARK 620 2 THR E 222 O 159.9 REMARK 620 3 GLY E 223 O 104.2 63.2 REMARK 620 4 HOH E 659 O 69.0 93.3 84.7 REMARK 620 5 HOH E 707 O 54.6 129.9 76.5 112.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 177 OE2 REMARK 620 2 ASN E 183 O 91.9 REMARK 620 3 ASP E 185 OD2 87.3 91.2 REMARK 620 4 GLU E 190 OE2 83.0 171.6 81.9 REMARK 620 5 HOH E 532 O 88.4 91.8 174.8 94.7 REMARK 620 6 HOH E 571 O 174.4 91.3 97.2 94.4 87.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR E 193 O REMARK 620 2 THR E 194 O 76.9 REMARK 620 3 THR E 194 OG1 76.4 70.8 REMARK 620 4 ILE E 197 O 155.0 79.6 103.9 REMARK 620 5 ASP E 200 OD1 121.6 133.1 72.9 81.2 REMARK 620 6 HOH E 591 O 81.4 151.7 121.2 117.4 74.2 REMARK 620 7 HOH E 753 O 87.7 84.2 152.8 81.4 134.1 77.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS E 406 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR E 193 OH REMARK 620 2 SER E 201 O 93.8 REMARK 620 3 LEU E 202 O 109.2 66.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS E 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS E 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ORK E 412 DBREF 6YI6 E 1 316 UNP P43133 THER_GEOSE 236 551 SEQRES 1 E 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 E 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 E 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 E 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 E 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 E 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 E 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 E 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 E 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 E 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 E 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 E 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 E 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 E 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 E 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 E 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 E 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 E 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 E 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 E 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 E 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 E 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 E 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 E 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 E 316 VAL GLY VAL LYS HET ZN E 401 1 HET CA E 402 1 HET CA E 403 1 HET CA E 404 1 HET CA E 405 1 HET CS E 406 1 HET CS E 407 1 HET DMS E 408 4 HET DMS E 409 4 HET DMS E 410 4 HET DMS E 411 4 HET ORK E 412 72 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM CS CESIUM ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM ORK (2~{S})-2-[[(2~{S})-4-METHYL-2-[[OXIDANYL-[(1~{S})-2- HETNAM 2 ORK PHENYL-1-(PHENYLMETHOXYCARBONYLAMINO) HETNAM 3 ORK ETHYL]PHOSPHORYL]AMINO]PENTANOYL]AMINO]PROPANOIC ACID FORMUL 2 ZN ZN 2+ FORMUL 3 CA 4(CA 2+) FORMUL 7 CS 2(CS 1+) FORMUL 9 DMS 4(C2 H6 O S) FORMUL 13 ORK C25 H34 N3 O7 P FORMUL 14 HOH *361(H2 O) HELIX 1 AA1 ALA E 64 TYR E 66 5 3 HELIX 2 AA2 ASP E 67 ASN E 89 1 23 HELIX 3 AA3 PRO E 132 GLY E 135 5 4 HELIX 4 AA4 GLY E 136 THR E 152 1 17 HELIX 5 AA5 GLN E 158 ASN E 181 1 24 HELIX 6 AA6 ASP E 207 GLY E 212 5 6 HELIX 7 AA7 HIS E 216 ARG E 220 5 5 HELIX 8 AA8 THR E 224 VAL E 230 1 7 HELIX 9 AA9 ASN E 233 GLY E 247 1 15 HELIX 10 AB1 GLY E 259 TYR E 274 1 16 HELIX 11 AB2 ASN E 280 GLY E 297 1 18 HELIX 12 AB3 SER E 300 VAL E 313 1 14 SHEET 1 AA1 5 ALA E 56 ASP E 57 0 SHEET 2 AA1 5 TYR E 28 TYR E 29 -1 N TYR E 28 O ASP E 57 SHEET 3 AA1 5 GLN E 17 TYR E 24 -1 N THR E 23 O TYR E 29 SHEET 4 AA1 5 THR E 4 ARG E 11 -1 N THR E 4 O TYR E 24 SHEET 5 AA1 5 GLN E 61 PHE E 62 1 O PHE E 62 N VAL E 9 SHEET 1 AA2 3 GLN E 31 ASP E 32 0 SHEET 2 AA2 3 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 AA2 3 SER E 53 LEU E 54 -1 O SER E 53 N ASP E 43 SHEET 1 AA3 5 GLN E 31 ASP E 32 0 SHEET 2 AA3 5 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 AA3 5 ILE E 100 TYR E 106 1 O ILE E 100 N PHE E 40 SHEET 4 AA3 5 MET E 120 GLY E 123 1 O MET E 120 N ARG E 101 SHEET 5 AA3 5 ALA E 113 TRP E 115 -1 N PHE E 114 O VAL E 121 SHEET 1 AA4 2 GLU E 187 ILE E 188 0 SHEET 2 AA4 2 ARG E 203 SER E 204 -1 O ARG E 203 N ILE E 188 SHEET 1 AA5 2 GLY E 248 HIS E 250 0 SHEET 2 AA5 2 VAL E 253 VAL E 255 -1 O VAL E 255 N GLY E 248 LINK OD1 ASP E 57 CA CA E 402 1555 1555 2.41 LINK OD2 ASP E 57 CA CA E 402 1555 1555 2.58 LINK OD1 ASP E 59 CA CA E 402 1555 1555 2.39 LINK O GLN E 61 CA CA E 402 1555 1555 2.27 LINK OD2 ASP E 138 CA CA E 403 1555 1555 2.39 LINK NE2 HIS E 142 ZN ZN E 401 1555 1555 2.02 LINK NE2 HIS E 146 ZN ZN E 401 1555 1555 2.05 LINK OD1 ASN E 159 CS CS E 407 1555 1555 3.19 LINK OE2 GLU E 166 ZN ZN E 401 1555 1555 1.99 LINK OE1 GLU E 177 CA CA E 403 1555 1555 2.47 LINK OE2 GLU E 177 CA CA E 403 1555 1555 2.74 LINK OE2 GLU E 177 CA CA E 404 1555 1555 2.43 LINK O ASN E 183 CA CA E 404 1555 1555 2.28 LINK OD1 ASP E 185 CA CA E 403 1555 1555 2.47 LINK OD2 ASP E 185 CA CA E 404 1555 1555 2.33 LINK O GLU E 187 CA CA E 403 1555 1555 2.33 LINK OE1 GLU E 190 CA CA E 403 1555 1555 2.50 LINK OE2 GLU E 190 CA CA E 403 1555 1555 2.49 LINK OE2 GLU E 190 CA CA E 404 1555 1555 2.34 LINK O TYR E 193 CA CA E 405 1555 1555 2.39 LINK OH TYR E 193 CS CS E 406 1555 1555 3.30 LINK O THR E 194 CA CA E 405 1555 1555 2.43 LINK OG1 THR E 194 CA CA E 405 1555 1555 2.38 LINK O ILE E 197 CA CA E 405 1555 1555 2.26 LINK OD1 ASP E 200 CA CA E 405 1555 1555 2.37 LINK O SER E 201 CS CS E 406 1555 1555 3.04 LINK O LEU E 202 CS CS E 406 1555 1555 3.32 LINK O THR E 222 CS CS E 407 1555 1555 3.26 LINK O GLY E 223 CS CS E 407 1555 1555 3.14 LINK ZN ZN E 401 O AORK E 412 1555 1555 2.03 LINK ZN ZN E 401 O BORK E 412 1555 1555 1.89 LINK ZN ZN E 401 O1 BORK E 412 1555 1555 2.67 LINK CA CA E 402 O HOH E 568 1555 1555 2.39 LINK CA CA E 402 O HOH E 602 1555 1555 2.40 LINK CA CA E 402 O HOH E 768 1555 1555 2.37 LINK CA CA E 403 O HOH E 567 1555 1555 2.44 LINK CA CA E 404 O HOH E 532 1555 1555 2.38 LINK CA CA E 404 O HOH E 571 1555 1555 2.34 LINK CA CA E 405 O HOH E 591 1555 1555 2.42 LINK CA CA E 405 O HOH E 753 1555 1555 2.44 LINK CS CS E 407 O HOH E 659 1555 1555 3.01 LINK CS CS E 407 O HOH E 707 1555 1555 3.23 CISPEP 1 LEU E 50 PRO E 51 0 4.64 SITE 1 AC1 4 HIS E 142 HIS E 146 GLU E 166 ORK E 412 SITE 1 AC2 6 ASP E 57 ASP E 59 GLN E 61 HOH E 568 SITE 2 AC2 6 HOH E 602 HOH E 768 SITE 1 AC3 6 ASP E 138 GLU E 177 ASP E 185 GLU E 187 SITE 2 AC3 6 GLU E 190 HOH E 567 SITE 1 AC4 6 GLU E 177 ASN E 183 ASP E 185 GLU E 190 SITE 2 AC4 6 HOH E 532 HOH E 571 SITE 1 AC5 6 TYR E 193 THR E 194 ILE E 197 ASP E 200 SITE 2 AC5 6 HOH E 591 HOH E 753 SITE 1 AC6 4 TYR E 193 SER E 201 LEU E 202 TYR E 211 SITE 1 AC7 4 ASN E 159 THR E 222 GLY E 223 HOH E 659 SITE 1 AC8 5 ILE E 1 THR E 2 GLY E 3 GLN E 31 SITE 2 AC8 5 ASN E 33 SITE 1 AC9 5 GLY E 95 PRO E 184 TRP E 186 HOH E 658 SITE 2 AC9 5 HOH E 694 SITE 1 AD1 4 GLY E 259 ARG E 260 ASP E 261 HOH E 523 SITE 1 AD2 3 TYR E 106 ORK E 412 HOH E 774 SITE 1 AD3 26 TYR E 106 TYR E 110 ASN E 112 ALA E 113 SITE 2 AD3 26 PHE E 114 TRP E 115 HIS E 142 GLU E 143 SITE 3 AD3 26 HIS E 146 ASP E 150 TYR E 157 ASN E 165 SITE 4 AD3 26 GLU E 166 LEU E 202 ARG E 203 HIS E 231 SITE 5 AD3 26 ZN E 401 DMS E 411 HOH E 507 HOH E 521 SITE 6 AD3 26 HOH E 536 HOH E 607 HOH E 667 HOH E 774 SITE 7 AD3 26 HOH E 782 HOH E 798 CRYST1 92.606 92.606 130.637 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010798 0.006234 0.000000 0.00000 SCALE2 0.000000 0.012469 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007655 0.00000