HEADER PEPTIDE BINDING PROTEIN 01-APR-20 6YIA TITLE 14-3-3 SIGMA IN COMPLEX WITH SMAD2 PS465 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN SIGMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL MARKER PROTEIN 1,STRATIFIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SMAD2; COMPND 8 CHAIN: P; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SFN, HME1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS PHOSPHORYLATION, SMAD, SIGNALLING, PPI, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.KIEHSTALLER,S.GRAF,S.HENNIG REVDAT 2 24-JAN-24 6YIA 1 REMARK REVDAT 1 14-APR-21 6YIA 0 JRNL AUTH S.GRAF,S.KIEHSTALLER,C.OTTMANN,S.HENNIG JRNL TITL IDENTIFICATION AND CHARACTERIZATION OF 14-3-3/SMAD JRNL TITL 2 PROTEIN-PROTEIN-INTERACTIONS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 70332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3400 - 3.8000 1.00 2863 152 0.1541 0.2129 REMARK 3 2 3.8000 - 3.0200 1.00 2731 143 0.1340 0.1438 REMARK 3 3 3.0200 - 2.6400 1.00 2735 144 0.1478 0.1963 REMARK 3 4 2.6400 - 2.3900 1.00 2686 142 0.1335 0.1395 REMARK 3 5 2.3900 - 2.2200 1.00 2694 141 0.1303 0.1815 REMARK 3 6 2.2200 - 2.0900 1.00 2696 142 0.1241 0.1771 REMARK 3 7 2.0900 - 1.9900 1.00 2667 140 0.1254 0.1409 REMARK 3 8 1.9900 - 1.9000 1.00 2688 141 0.1277 0.1720 REMARK 3 9 1.9000 - 1.8300 1.00 2660 140 0.1240 0.1590 REMARK 3 10 1.8300 - 1.7600 1.00 2706 143 0.1191 0.1443 REMARK 3 11 1.7600 - 1.7100 1.00 2647 139 0.1198 0.1415 REMARK 3 12 1.7100 - 1.6600 1.00 2648 140 0.1238 0.1568 REMARK 3 13 1.6600 - 1.6200 1.00 2672 140 0.1230 0.1781 REMARK 3 14 1.6200 - 1.5800 1.00 2650 140 0.1276 0.1546 REMARK 3 15 1.5800 - 1.5400 1.00 2660 140 0.1352 0.1811 REMARK 3 16 1.5400 - 1.5100 1.00 2650 140 0.1409 0.1837 REMARK 3 17 1.5100 - 1.4800 1.00 2639 138 0.1511 0.1888 REMARK 3 18 1.4800 - 1.4500 1.00 2659 141 0.1639 0.1984 REMARK 3 19 1.4500 - 1.4200 1.00 2667 140 0.1875 0.2171 REMARK 3 20 1.4200 - 1.4000 1.00 2660 140 0.2139 0.2457 REMARK 3 21 1.4000 - 1.3800 1.00 2631 138 0.2299 0.2839 REMARK 3 22 1.3800 - 1.3600 1.00 2628 139 0.2633 0.3219 REMARK 3 23 1.3600 - 1.3400 0.99 2633 138 0.3009 0.3614 REMARK 3 24 1.3400 - 1.3200 0.99 2624 139 0.3310 0.3635 REMARK 3 25 1.3200 - 1.3000 0.99 2620 138 0.3795 0.4241 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.198 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.749 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2189 REMARK 3 ANGLE : 0.800 2993 REMARK 3 CHIRALITY : 0.062 327 REMARK 3 PLANARITY : 0.005 398 REMARK 3 DIHEDRAL : 14.421 340 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YIA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70364 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 45.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 24.08 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MHR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH7.1 0.19 M CACL2 5% REMARK 280 GLYCEROL 28% PEG400, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.15500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.15500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.02500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.80000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.02500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.80000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.15500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.02500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.80000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.15500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.02500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.80000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -151.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 72 REMARK 465 GLY A 73 REMARK 465 ACE P 119 REMARK 465 TRP P 120 REMARK 465 PRO P 121 REMARK 465 SER P 122 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 68 CE NZ REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 SER A 74 OG REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 ASP A 138 CG OD1 OD2 REMARK 470 GLU A 210 CD OE1 OE2 REMARK 470 LYS A 214 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 410 O HOH P 202 2.07 REMARK 500 O HOH A 425 O HOH A 654 2.13 REMARK 500 O HOH A 403 O HOH A 422 2.13 REMARK 500 O HOH A 425 O HOH A 642 2.14 REMARK 500 O HOH A 665 O HOH A 752 2.14 REMARK 500 O HOH A 413 O HOH P 207 2.15 REMARK 500 O HOH A 410 O HOH A 462 2.16 REMARK 500 O HOH A 455 O HOH A 558 2.16 REMARK 500 O HOH A 504 O HOH P 207 2.17 REMARK 500 O HOH A 403 O HOH A 459 2.17 REMARK 500 O ARG P 124 O HOH P 201 2.19 REMARK 500 O HOH A 694 O HOH A 727 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 110 OH TYR A 213 8545 2.13 REMARK 500 O HOH A 652 O HOH A 672 6444 2.16 REMARK 500 O HOH A 488 O HOH A 672 6444 2.18 REMARK 500 O HOH A 641 O HOH A 727 6445 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 76.41 -103.51 REMARK 500 ARG A 18 76.41 -105.69 REMARK 500 HIS A 106 37.53 -145.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 756 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 757 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 758 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 759 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 760 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 761 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 762 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A 763 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A 764 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A 765 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH A 766 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A 767 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH A 768 DISTANCE = 8.21 ANGSTROMS REMARK 525 HOH A 769 DISTANCE = 9.04 ANGSTROMS REMARK 525 HOH A 770 DISTANCE = 9.27 ANGSTROMS REMARK 525 HOH A 771 DISTANCE = 9.29 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 2 OE1 REMARK 620 2 GLU A 2 OE1 0.0 REMARK 620 3 HOH A 594 O 81.4 81.4 REMARK 620 4 HOH A 594 O 79.0 79.0 147.4 REMARK 620 5 HOH A 641 O 88.7 88.7 63.7 140.9 REMARK 620 6 HOH A 641 O 140.8 140.8 126.9 62.8 126.4 REMARK 620 7 HOH A 649 O 91.9 91.9 115.5 91.1 51.9 97.2 REMARK 620 8 HOH A 649 O 160.7 160.7 82.8 109.5 94.2 47.5 104.9 REMARK 620 9 HOH A 727 O 133.0 133.0 136.4 74.8 87.7 46.6 51.0 66.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 308 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 OE1 REMARK 620 2 GLU A 35 OE2 50.5 REMARK 620 3 GLU A 110 O 86.9 81.8 REMARK 620 4 GLU A 188 OE2 120.8 84.5 45.3 REMARK 620 5 HOH A 576 O 118.8 81.9 45.2 2.6 REMARK 620 6 HOH A 655 O 119.4 80.6 48.1 5.0 3.2 REMARK 620 7 HOH A 724 O 121.1 82.0 49.0 4.6 3.8 1.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 75 OE2 REMARK 620 2 GLU A 161 O 66.1 REMARK 620 3 HOH A 653 O 92.8 29.6 REMARK 620 4 HOH A 660 O 97.0 161.2 156.5 REMARK 620 5 HOH A 703 O 132.4 103.4 95.0 94.1 REMARK 620 6 HOH A 729 O 152.3 106.4 76.8 84.7 74.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 89 OE1 REMARK 620 2 VAL A 134 O 98.3 REMARK 620 3 HOH A 574 O 101.0 104.1 REMARK 620 4 HOH A 717 O 116.5 131.7 101.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 309 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 146 OG REMARK 620 2 HOH A 497 O 138.3 REMARK 620 3 HOH A 536 O 101.7 99.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 153 OE1 REMARK 620 2 HOH A 490 O 94.6 REMARK 620 3 HOH A 536 O 136.2 129.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 599 O REMARK 620 2 HOH A 613 O 107.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues SEP P 127 REMARK 800 through MET P 128 bound to SER P 126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand SEP P 127 bound to SER P REMARK 800 126 DBREF 6YIA A 1 231 UNP P31947 1433S_HUMAN 1 231 DBREF 6YIA P 119 129 PDB 6YIA 6YIA 119 129 SEQADV 6YIA GLY A -4 UNP P31947 EXPRESSION TAG SEQADV 6YIA ALA A -3 UNP P31947 EXPRESSION TAG SEQADV 6YIA MET A -2 UNP P31947 EXPRESSION TAG SEQADV 6YIA GLY A -1 UNP P31947 EXPRESSION TAG SEQADV 6YIA SER A 0 UNP P31947 EXPRESSION TAG SEQRES 1 A 236 GLY ALA MET GLY SER MET GLU ARG ALA SER LEU ILE GLN SEQRES 2 A 236 LYS ALA LYS LEU ALA GLU GLN ALA GLU ARG TYR GLU ASP SEQRES 3 A 236 MET ALA ALA PHE MET LYS GLY ALA VAL GLU LYS GLY GLU SEQRES 4 A 236 GLU LEU SER CYS GLU GLU ARG ASN LEU LEU SER VAL ALA SEQRES 5 A 236 TYR LYS ASN VAL VAL GLY GLY GLN ARG ALA ALA TRP ARG SEQRES 6 A 236 VAL LEU SER SER ILE GLU GLN LYS SER ASN GLU GLU GLY SEQRES 7 A 236 SER GLU GLU LYS GLY PRO GLU VAL ARG GLU TYR ARG GLU SEQRES 8 A 236 LYS VAL GLU THR GLU LEU GLN GLY VAL CYS ASP THR VAL SEQRES 9 A 236 LEU GLY LEU LEU ASP SER HIS LEU ILE LYS GLU ALA GLY SEQRES 10 A 236 ASP ALA GLU SER ARG VAL PHE TYR LEU LYS MET LYS GLY SEQRES 11 A 236 ASP TYR TYR ARG TYR LEU ALA GLU VAL ALA THR GLY ASP SEQRES 12 A 236 ASP LYS LYS ARG ILE ILE ASP SER ALA ARG SER ALA TYR SEQRES 13 A 236 GLN GLU ALA MET ASP ILE SER LYS LYS GLU MET PRO PRO SEQRES 14 A 236 THR ASN PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER SEQRES 15 A 236 VAL PHE HIS TYR GLU ILE ALA ASN SER PRO GLU GLU ALA SEQRES 16 A 236 ILE SER LEU ALA LYS THR THR PHE ASP GLU ALA MET ALA SEQRES 17 A 236 ASP LEU HIS THR LEU SER GLU ASP SER TYR LYS ASP SER SEQRES 18 A 236 THR LEU ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU SEQRES 19 A 236 TRP THR SEQRES 1 P 11 ACE TRP PRO SER VAL ARG CYS SER SEP MET SER HET SEP P 127 10 HET MG A 301 1 HET MG A 302 1 HET MG A 303 1 HET MG A 304 1 HET MG A 305 1 HET GOL A 306 6 HET CL A 307 1 HET CA A 308 1 HET NA A 309 1 HETNAM SEP PHOSPHOSERINE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SEP C3 H8 N O6 P FORMUL 3 MG 5(MG 2+) FORMUL 8 GOL C3 H8 O3 FORMUL 9 CL CL 1- FORMUL 10 CA CA 2+ FORMUL 11 NA NA 1+ FORMUL 12 HOH *388(H2 O) HELIX 1 AA1 GLU A 2 ALA A 16 1 15 HELIX 2 AA2 ARG A 18 GLU A 31 1 14 HELIX 3 AA3 SER A 37 ASN A 70 1 34 HELIX 4 AA4 PRO A 79 SER A 105 1 27 HELIX 5 AA5 HIS A 106 ALA A 111 1 6 HELIX 6 AA6 ASP A 113 ALA A 135 1 23 HELIX 7 AA7 ASP A 139 MET A 162 1 24 HELIX 8 AA8 ASN A 166 ILE A 183 1 18 HELIX 9 AA9 SER A 186 ALA A 203 1 18 HELIX 10 AB1 ASP A 204 LEU A 208 5 5 HELIX 11 AB2 SER A 209 THR A 231 1 23 LINK C ASER P 126 N SEP P 127 1555 1555 1.32 LINK C BSER P 126 N SEP P 127 1555 1555 1.33 LINK C SEP P 127 N MET P 128 1555 1555 1.33 LINK OE1 GLU A 2 MG MG A 303 1555 1555 2.31 LINK OE1 GLU A 2 MG MG A 303 1555 3555 2.54 LINK OE1 GLU A 35 CA CA A 308 1555 6445 2.35 LINK OE2 GLU A 35 CA CA A 308 1555 6445 2.71 LINK OE2 GLU A 75 MG MG A 302 1555 1555 2.38 LINK OE1 GLU A 89 MG MG A 301 1555 1555 2.70 LINK O GLU A 110 CA CA A 308 1555 6445 2.27 LINK O VAL A 134 MG MG A 301 1555 1555 2.76 LINK OG SER A 146 NA NA A 309 1555 1555 3.00 LINK OE1BGLU A 153 MG MG A 305 1555 1555 2.44 LINK O GLU A 161 MG MG A 302 1555 7444 2.24 LINK OE2 GLU A 188 CA CA A 308 1555 1555 2.31 LINK MG MG A 301 O HOH A 574 1555 1555 2.73 LINK MG MG A 301 O HOH A 717 1555 1555 2.79 LINK MG MG A 302 O HOH A 653 1555 1555 2.51 LINK MG MG A 302 O HOH A 660 1555 1555 2.49 LINK MG MG A 302 O HOH A 703 1555 1555 2.18 LINK MG MG A 302 O HOH A 729 1555 1555 2.38 LINK MG MG A 303 O HOH A 594 1555 1555 2.60 LINK MG MG A 303 O HOH A 594 1555 3555 2.49 LINK MG MG A 303 O HOH A 641 1555 1555 2.58 LINK MG MG A 303 O HOH A 641 1555 3555 2.75 LINK MG MG A 303 O HOH A 649 1555 1555 2.55 LINK MG MG A 303 O HOH A 649 1555 3555 2.84 LINK MG MG A 303 O HOH A 727 1555 8545 2.79 LINK MG MG A 304 O HOH A 599 1555 1555 2.95 LINK MG MG A 304 O HOH A 613 1555 1555 2.79 LINK MG MG A 305 O HOH A 490 1555 1555 2.55 LINK MG MG A 305 O HOH A 536 1555 1555 2.65 LINK CA CA A 308 O HOH A 576 1555 1555 2.38 LINK CA CA A 308 O HOH A 655 1555 1555 2.34 LINK CA CA A 308 O HOH A 724 1555 1555 2.34 LINK NA NA A 309 O HOH A 497 1555 1555 3.03 LINK NA NA A 309 O HOH A 536 1555 1555 2.70 CISPEP 1 SER A 105 HIS A 106 0 7.70 SITE 1 AC1 5 GLU A 89 VAL A 134 THR A 136 HOH A 574 SITE 2 AC1 5 HOH A 717 SITE 1 AC2 6 GLU A 75 GLU A 161 HOH A 653 HOH A 660 SITE 2 AC2 6 HOH A 703 HOH A 729 SITE 1 AC3 5 GLU A 2 HOH A 594 HOH A 641 HOH A 649 SITE 2 AC3 5 HOH A 727 SITE 1 AC4 5 ARG A 18 GLU A 20 ASP A 21 HOH A 599 SITE 2 AC4 5 HOH A 613 SITE 1 AC5 5 LYS A 124 ALA A 150 GLU A 153 HOH A 490 SITE 2 AC5 5 HOH A 536 SITE 1 AC6 5 TYR A 213 THR A 217 MET A 220 ARG A 224 SITE 2 AC6 5 HOH A 402 SITE 1 AC7 3 LYS A 9 HOH A 743 HOH A 767 SITE 1 AC8 6 GLU A 35 GLU A 110 GLU A 188 HOH A 576 SITE 2 AC8 6 HOH A 655 HOH A 724 SITE 1 AC9 3 SER A 146 HOH A 497 HOH A 536 SITE 1 AD1 14 LYS A 49 ARG A 56 ARG A 129 TYR A 130 SITE 2 AD1 14 LEU A 174 ASN A 175 SER P 126 SER P 129 SITE 3 AD1 14 HOH P 203 HOH P 204 HOH P 206 HOH P 209 SITE 4 AD1 14 HOH P 211 HOH P 213 SITE 1 AD2 14 LYS A 49 ARG A 56 ARG A 129 TYR A 130 SITE 2 AD2 14 ASN A 175 SER P 126 MET P 128 SER P 129 SITE 3 AD2 14 HOH P 203 HOH P 204 HOH P 206 HOH P 209 SITE 4 AD2 14 HOH P 211 HOH P 213 CRYST1 82.050 111.600 62.310 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012188 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008961 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016049 0.00000