HEADER ENDOCYTOSIS 01-APR-20 6YIG TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL EF-HAND DOMAIN OF ARABIDOPSIS TITLE 2 THALIANA ATEH1/PAN1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM-BINDING EF HAND FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: F2D10.25; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE FIRST 21 AMINO ACIDS ENCODE FOR AN N-TERMINAL COMPND 7 6XHIS TAG AND A TEV CLEAVAGE SITE. THE PROTEIN WAS SUBJECTED TO A TEV COMPND 8 DIGEST HENCE THE FIRST 15 AMINO ACIDS SHOULD NO LONGER BE PRESENT. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT1G20760, F2D10.25, F2D10_25; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: NEB C2527; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS CALCIUM-BINDING, CLATHRIN, TPLATE, LIPID-BINDING., ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR K.YPERMAN,R.MERCERON,S.DE MUNCK,Y.BLOCH,S.N.SAVVIDES,R.PLESKOT,D.VAN AUTHOR 2 DAMME REVDAT 3 24-JAN-24 6YIG 1 REMARK REVDAT 2 09-JUN-21 6YIG 1 JRNL REMARK REVDAT 1 14-APR-21 6YIG 0 JRNL AUTH K.YPERMAN,A.C.PAPAGEORGIOU,R.MERCERON,S.DE MUNCK,Y.BLOCH, JRNL AUTH 2 D.EECKHOUT,Q.JIANG,P.TACK,R.GRIGORYAN,T.EVANGELIDIS, JRNL AUTH 3 J.VAN LEENE,L.VINCZE,P.VANDENABEELE,F.VANHAECKE,M.POTOCKY, JRNL AUTH 4 G.DE JAEGER,S.N.SAVVIDES,K.TRIPSIANES,R.PLESKOT,D.VAN DAMME JRNL TITL DISTINCT EH DOMAINS OF THE ENDOCYTIC TPLATE COMPLEX CONFER JRNL TITL 2 LIPID AND PROTEIN BINDING. JRNL REF NAT COMMUN V. 12 3050 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34031427 JRNL DOI 10.1038/S41467-021-23314-6 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 23738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.0000 - 3.2200 1.00 2571 142 0.1523 0.1376 REMARK 3 2 3.2200 - 2.5600 1.00 2599 136 0.1439 0.1762 REMARK 3 3 2.5600 - 2.2400 1.00 2570 135 0.1298 0.1604 REMARK 3 4 2.2400 - 2.0300 1.00 2586 143 0.1251 0.1609 REMARK 3 5 2.0300 - 1.8900 1.00 2574 136 0.1408 0.1666 REMARK 3 6 1.8900 - 1.7700 1.00 2593 132 0.1390 0.1861 REMARK 3 7 1.7700 - 1.6900 0.99 2519 133 0.1561 0.1853 REMARK 3 8 1.6900 - 1.6100 0.91 2375 125 0.1682 0.2027 REMARK 3 9 1.6100 - 1.5500 0.84 2154 115 0.1921 0.2437 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.106 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.459 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 813 REMARK 3 ANGLE : 0.931 1111 REMARK 3 CHIRALITY : 0.048 123 REMARK 3 PLANARITY : 0.007 150 REMARK 3 DIHEDRAL : 17.335 295 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5768 16.6037 0.0982 REMARK 3 T TENSOR REMARK 3 T11: 0.5883 T22: 0.6113 REMARK 3 T33: 0.4407 T12: 0.0733 REMARK 3 T13: 0.2560 T23: -0.0562 REMARK 3 L TENSOR REMARK 3 L11: 0.9730 L22: 0.6371 REMARK 3 L33: 1.6093 L12: 0.3894 REMARK 3 L13: 0.1848 L23: -0.7964 REMARK 3 S TENSOR REMARK 3 S11: -0.0408 S12: 0.7001 S13: -0.2236 REMARK 3 S21: -1.4987 S22: 0.2666 S23: -0.8265 REMARK 3 S31: -0.2229 S32: 0.4774 S33: -0.0898 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3416 19.7636 8.7559 REMARK 3 T TENSOR REMARK 3 T11: 0.1790 T22: 0.1569 REMARK 3 T33: 0.1317 T12: -0.0212 REMARK 3 T13: 0.0336 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 4.8880 L22: 3.1079 REMARK 3 L33: 8.5279 L12: 0.3401 REMARK 3 L13: -1.0326 L23: 4.9799 REMARK 3 S TENSOR REMARK 3 S11: 0.0822 S12: 0.0915 S13: 0.2313 REMARK 3 S21: -0.5510 S22: 0.1636 S23: -0.4793 REMARK 3 S31: -0.3427 S32: 0.3929 S33: -0.2233 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2124 23.9071 19.5297 REMARK 3 T TENSOR REMARK 3 T11: 0.1537 T22: 0.1511 REMARK 3 T33: 0.1604 T12: -0.0105 REMARK 3 T13: -0.0049 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 5.9370 L22: 3.7376 REMARK 3 L33: 1.6725 L12: 2.2775 REMARK 3 L13: -1.3420 L23: 1.3381 REMARK 3 S TENSOR REMARK 3 S11: 0.0710 S12: -0.3129 S13: 0.3357 REMARK 3 S21: 0.2353 S22: -0.1016 S23: 0.1624 REMARK 3 S31: -0.1482 S32: -0.0587 S33: 0.0282 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1288 22.2614 11.4943 REMARK 3 T TENSOR REMARK 3 T11: 0.1436 T22: 0.1370 REMARK 3 T33: 0.1710 T12: 0.0312 REMARK 3 T13: -0.0222 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.5409 L22: 1.6672 REMARK 3 L33: 2.8428 L12: 1.9658 REMARK 3 L13: 2.2185 L23: 1.9064 REMARK 3 S TENSOR REMARK 3 S11: -0.0276 S12: -0.0802 S13: 0.1999 REMARK 3 S21: -0.0738 S22: -0.0619 S23: 0.1647 REMARK 3 S31: -0.2074 S32: -0.1772 S33: 0.0741 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0202 14.4019 15.6469 REMARK 3 T TENSOR REMARK 3 T11: 0.1403 T22: 0.1462 REMARK 3 T33: 0.1446 T12: -0.0034 REMARK 3 T13: 0.0022 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 5.0285 L22: 3.0245 REMARK 3 L33: 4.0707 L12: -0.4809 REMARK 3 L13: 1.1447 L23: -0.0623 REMARK 3 S TENSOR REMARK 3 S11: 0.0703 S12: -0.1008 S13: 0.0200 REMARK 3 S21: 0.1042 S22: -0.0615 S23: 0.1044 REMARK 3 S31: -0.0208 S32: -0.2966 S33: -0.0026 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8582 12.9405 15.0188 REMARK 3 T TENSOR REMARK 3 T11: 0.1403 T22: 0.1276 REMARK 3 T33: 0.1137 T12: 0.0115 REMARK 3 T13: -0.0132 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 3.0573 L22: 2.7670 REMARK 3 L33: 4.0169 L12: 1.1415 REMARK 3 L13: 0.3312 L23: 1.2910 REMARK 3 S TENSOR REMARK 3 S11: 0.0802 S12: -0.2646 S13: -0.1565 REMARK 3 S21: 0.2538 S22: -0.0152 S23: -0.0972 REMARK 3 S31: 0.1761 S32: 0.0465 S33: -0.0649 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2134 6.3120 5.5088 REMARK 3 T TENSOR REMARK 3 T11: 0.2370 T22: 0.2785 REMARK 3 T33: 0.2450 T12: -0.0712 REMARK 3 T13: -0.0705 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.1938 L22: 9.8645 REMARK 3 L33: 6.3718 L12: 1.2736 REMARK 3 L13: -0.8193 L23: -7.4708 REMARK 3 S TENSOR REMARK 3 S11: -0.3338 S12: 0.4156 S13: 0.2056 REMARK 3 S21: -1.0183 S22: 0.8211 S23: 0.9496 REMARK 3 S31: 0.2026 S32: -0.3363 S33: -0.2963 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6734 1.4020 10.5691 REMARK 3 T TENSOR REMARK 3 T11: 0.1260 T22: 0.1218 REMARK 3 T33: 0.1653 T12: 0.0080 REMARK 3 T13: -0.0143 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 7.4696 L22: 2.1334 REMARK 3 L33: 4.5654 L12: -0.2299 REMARK 3 L13: -3.0754 L23: -1.3215 REMARK 3 S TENSOR REMARK 3 S11: 0.0908 S12: 0.2550 S13: -0.0568 REMARK 3 S21: -0.1158 S22: -0.0854 S23: 0.1799 REMARK 3 S31: 0.1426 S32: -0.2313 S33: -0.0156 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5374 16.9339 3.0611 REMARK 3 T TENSOR REMARK 3 T11: 0.1505 T22: 0.1720 REMARK 3 T33: 0.1243 T12: -0.0111 REMARK 3 T13: 0.0050 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 7.2332 L22: 4.4780 REMARK 3 L33: 5.7700 L12: -5.1213 REMARK 3 L13: 0.8492 L23: -2.7998 REMARK 3 S TENSOR REMARK 3 S11: 0.2974 S12: 0.2755 S13: 0.5139 REMARK 3 S21: -0.6371 S22: -0.3077 S23: -0.3956 REMARK 3 S31: -0.2374 S32: 0.1969 S33: -0.0565 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YIG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107561. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20180409 REMARK 200 DATA SCALING SOFTWARE : XSCALE 20180409 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23759 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 33.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 7.470 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.64 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 2QPT REMARK 200 REMARK 200 REMARK: PLATE LIKE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7.6, 0.8M REMARK 280 SODIUMMALONATE, 0.5% JEFFAMINE, PH 7.3, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.75500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.76000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.31000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.76000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.75500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 19.31000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 SER A 106 REMARK 465 ALA A 107 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 5 CG OD1 ND2 REMARK 470 LYS A 16 CE NZ REMARK 470 ARG A 17 CZ NH1 NH2 REMARK 470 ARG A 54 CD NE CZ NH1 NH2 REMARK 470 LYS A 78 CD CE NZ REMARK 470 ARG A 79 CZ NH1 NH2 REMARK 470 ASP A 80 CG OD1 OD2 REMARK 470 LYS A 97 CE NZ REMARK 470 ASN A 104 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 347 O HOH A 349 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 19 OD1 REMARK 620 2 ASP A 21 OD1 80.0 REMARK 620 3 ASP A 23 OD1 88.1 77.8 REMARK 620 4 ARG A 25 O 85.7 152.7 78.5 REMARK 620 5 GLU A 30 OE1 104.9 128.0 152.2 78.1 REMARK 620 6 GLU A 30 OE2 95.6 76.3 152.8 128.6 51.8 REMARK 620 7 HOH A 336 O 166.8 95.1 78.8 93.5 87.8 95.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 53 OD1 REMARK 620 2 SER A 55 OG 96.5 REMARK 620 3 SER A 57 OG 100.5 77.1 REMARK 620 4 PHE A 59 O 93.1 166.7 92.0 REMARK 620 5 HOH A 315 O 95.8 77.6 151.2 110.7 REMARK 620 6 HOH A 342 O 169.8 82.8 69.4 86.1 93.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6YEU RELATED DB: PDB REMARK 900 RELATED ID: 6YET RELATED DB: PDB DBREF 6YIG A 1 107 UNP Q9LM78 Q9LM78_ARATH 1 107 SEQADV 6YIG GLY A -1 UNP Q9LM78 EXPRESSION TAG SEQADV 6YIG GLY A 0 UNP Q9LM78 EXPRESSION TAG SEQRES 1 A 109 GLY GLY MET ALA GLY GLN ASN PRO ASN MET ASP GLN PHE SEQRES 2 A 109 GLU ALA TYR PHE LYS ARG ALA ASP LEU ASP GLY ASP GLY SEQRES 3 A 109 ARG ILE SER GLY ALA GLU ALA VAL GLY PHE PHE GLN GLY SEQRES 4 A 109 SER GLY LEU SER LYS GLN VAL LEU ALA GLN ILE TRP SER SEQRES 5 A 109 LEU SER ASP ARG SER HIS SER GLY PHE LEU ASP ARG GLN SEQRES 6 A 109 ASN PHE TYR ASN SER LEU ARG LEU VAL THR VAL ALA GLN SEQRES 7 A 109 SER LYS ARG ASP LEU THR PRO GLU ILE VAL ASN ALA ALA SEQRES 8 A 109 LEU ASN THR PRO ALA ALA ALA LYS ILE PRO PRO PRO LYS SEQRES 9 A 109 ILE ASN LEU SER ALA HET CA A 201 1 HET NA A 202 1 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 2 CA CA 2+ FORMUL 3 NA NA 1+ FORMUL 4 HOH *95(H2 O) HELIX 1 AA1 ASP A 9 ASP A 19 1 11 HELIX 2 AA2 GLY A 28 GLN A 36 1 9 HELIX 3 AA3 SER A 41 ASP A 53 1 13 HELIX 4 AA4 ASP A 61 SER A 77 1 17 HELIX 5 AA5 THR A 82 THR A 92 1 11 HELIX 6 AA6 PRO A 93 ILE A 98 5 6 SHEET 1 AA1 2 ILE A 26 SER A 27 0 SHEET 2 AA1 2 PHE A 59 LEU A 60 -1 O LEU A 60 N ILE A 26 LINK OD1 ASP A 19 CA CA A 201 1555 1555 2.27 LINK OD1 ASP A 21 CA CA A 201 1555 1555 2.34 LINK OD1 ASP A 23 CA CA A 201 1555 1555 2.37 LINK O ARG A 25 CA CA A 201 1555 1555 2.30 LINK OE1 GLU A 30 CA CA A 201 1555 1555 2.43 LINK OE2 GLU A 30 CA CA A 201 1555 1555 2.60 LINK OD1 ASP A 53 NA NA A 202 1555 1555 2.32 LINK OG SER A 55 NA NA A 202 1555 1555 2.56 LINK OG SER A 57 NA NA A 202 1555 1555 2.35 LINK O PHE A 59 NA NA A 202 1555 1555 2.27 LINK CA CA A 201 O HOH A 336 1555 1555 2.37 LINK NA NA A 202 O HOH A 315 1555 1555 2.27 LINK NA NA A 202 O HOH A 342 1555 1555 2.64 SITE 1 AC1 6 ASP A 19 ASP A 21 ASP A 23 ARG A 25 SITE 2 AC1 6 GLU A 30 HOH A 336 SITE 1 AC2 6 ASP A 53 SER A 55 SER A 57 PHE A 59 SITE 2 AC2 6 HOH A 315 HOH A 342 CRYST1 35.510 38.620 63.520 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028161 0.000000 0.000000 0.00000 SCALE2 0.000000 0.025893 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015743 0.00000