HEADER SIGNALING PROTEIN 01-APR-20 6YII TITLE CRYSTAL STRUCTURE OF A CLASS III ADENYLYL CYCLASE-LIKE ATP-BINDING TITLE 2 PROTEIN FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: CAZ10_26895, DZ962_04370, IPC1509_03400, IPC170_13765, SOURCE 5 IPC669_21205; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: TUNER PREP GROESL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS ATP COMPLEX, CLASS III ADENYLYL CYCLASE FOLD, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MONIOT,C.STEEGBORN REVDAT 3 15-MAY-24 6YII 1 LINK REVDAT 2 15-JUL-20 6YII 1 JRNL REVDAT 1 17-JUN-20 6YII 0 JRNL AUTH J.LINDER,E.HUPFELD,M.WEYAND,C.STEEGBORN,S.MONIOT JRNL TITL CRYSTAL STRUCTURE OF A CLASS III ADENYLYL CYCLASE-LIKE JRNL TITL 2 ATP-BINDING PROTEIN FROM PSEUDOMONAS AERUGINOSA. JRNL REF J.STRUCT.BIOL. V. 211 07534 2020 JRNL REFN ESSN 1095-8657 JRNL PMID 32454240 JRNL DOI 10.1016/J.JSB.2020.107534 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV 2666 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 126829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.147 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4108 REMARK 3 ANGLE : 1.011 5608 REMARK 3 CHIRALITY : 0.075 619 REMARK 3 PLANARITY : 0.007 756 REMARK 3 DIHEDRAL : 20.654 1586 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YII COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 126837 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 30.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.06600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5 % MPD, 75 MM NA ACETATE PH 4.8 REMARK 280 AND 15 MM CACL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.20000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.84000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.34000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.84000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.34000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 474 REMARK 465 ASP A 475 REMARK 465 GLY A 476 REMARK 465 ASP A 477 REMARK 465 ALA A 478 REMARK 465 SER A 479 REMARK 465 ALA A 480 REMARK 465 LYS A 481 REMARK 465 GLN A 482 REMARK 465 ALA A 483 REMARK 465 ARG A 484 REMARK 465 SER A 485 REMARK 465 GLU A 486 REMARK 465 ALA A 487 REMARK 465 TYR A 488 REMARK 465 ALA A 489 REMARK 465 GLY A 490 REMARK 465 SER A 491 REMARK 465 ALA A 492 REMARK 465 ALA A 493 REMARK 465 ILE A 494 REMARK 465 ILE A 495 REMARK 465 ARG A 496 REMARK 465 ALA A 497 REMARK 465 ASP A 498 REMARK 465 GLU A 499 REMARK 465 ARG A 500 REMARK 465 GLN A 501 REMARK 465 VAL A 502 REMARK 465 GLN A 503 REMARK 465 PRO A 504 REMARK 465 HIS A 505 REMARK 465 SER A 506 REMARK 465 ARG A 507 REMARK 465 GLN A 508 REMARK 465 LYS A 509 REMARK 465 VAL A 510 REMARK 465 ASP A 511 REMARK 465 GLY A 512 REMARK 465 SER A 513 REMARK 465 ARG A 514 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 412 O HOH A 712 1.59 REMARK 500 O HOH A 891 O HOH A 1133 1.92 REMARK 500 O HOH A 809 O HOH A 1133 2.02 REMARK 500 O HOH A 1170 O HOH A 1206 2.04 REMARK 500 O HOH A 1142 O HOH A 1274 2.07 REMARK 500 OD1 ASP A 249 O HOH A 701 2.10 REMARK 500 O HOH A 1169 O HOH A 1240 2.11 REMARK 500 O HOH A 1219 O HOH A 1247 2.13 REMARK 500 O HOH A 719 O HOH A 1186 2.15 REMARK 500 O HOH A 866 O HOH A 1199 2.15 REMARK 500 O HOH A 1199 O HOH A 1336 2.18 REMARK 500 O HOH A 844 O HOH A 1206 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 756 O HOH A 1147 4465 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 2.08 80.77 REMARK 500 SER A 103 -111.41 57.04 REMARK 500 ASN A 411 43.65 -143.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1340 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A1341 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A1342 DISTANCE = 7.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 610 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 2 O REMARK 620 2 SER A 327 O 137.2 REMARK 620 3 SER A 327 O 124.5 13.0 REMARK 620 4 ASP A 328 O 82.9 79.4 72.4 REMARK 620 5 GLU A 330 OE2 71.5 76.1 68.5 105.1 REMARK 620 6 HOH A1012 O 109.8 106.1 114.9 82.5 172.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 602 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 291 OD2 REMARK 620 2 ATP A 601 O2G 98.2 REMARK 620 3 ATP A 601 O1B 172.2 85.2 REMARK 620 4 ATP A 601 O2A 88.2 91.3 84.7 REMARK 620 5 HOH A 817 O 90.5 95.8 96.1 172.8 REMARK 620 6 HOH A1021 O 87.8 172.6 88.4 84.4 88.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 291 OD1 REMARK 620 2 ILE A 292 O 88.1 REMARK 620 3 ASP A 339 OD1 79.2 84.9 REMARK 620 4 ASP A 339 OD2 130.6 97.7 52.8 REMARK 620 5 ATP A 601 O2G 83.2 87.6 161.0 145.8 REMARK 620 6 ATP A 601 O3G 142.8 91.2 137.8 86.4 59.5 REMARK 620 7 HOH A1010 O 88.3 171.7 101.8 90.3 84.6 87.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 609 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 329 O REMARK 620 2 SER A 345 OG 142.9 REMARK 620 3 HOH A 718 O 101.9 55.1 REMARK 620 4 HOH A1132 O 101.0 98.7 153.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 607 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 454 O REMARK 620 2 SER A 457 OG 96.5 REMARK 620 3 LYS A 459 O 85.1 75.0 REMARK 620 4 HOH A 954 O 86.1 177.1 103.9 REMARK 620 5 HOH A1119 O 100.5 80.7 155.5 100.3 REMARK 620 6 HOH A1180 O 169.3 89.7 88.1 87.6 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 608 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 740 O REMARK 620 2 HOH A 842 O 55.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 610 DBREF 6YII A 1 514 UNP A6N5T2 A6N5T2_PSEAI 1 514 SEQRES 1 A 514 MET SER LYS SER TRP ASN HIS ASP ARG ALA ALA LYS HIS SEQRES 2 A 514 ILE ASP GLN LYS ILE ALA ASP VAL GLU GLU ILE THR ILE SEQRES 3 A 514 LYS ASP TYR VAL ARG ASP MET SER LEU GLU SER ILE PRO SEQRES 4 A 514 THR SER THR ALA TYR ARG VAL ASP GLY VAL HIS MET TYR SEQRES 5 A 514 ALA ASP ILE MET ASN LEU GLU ASP MET LEU ASN ILE THR SEQRES 6 A 514 ALA VAL GLU GLY THR GLU CYS HIS LYS ARG THR LEU ARG SEQRES 7 A 514 PHE LEU ASP GLN HIS TYR ARG ALA VAL LYS ARG ILE LEU SEQRES 8 A 514 ASN LYS VAL ASP ALA ARG ARG VAL ASP PHE HIS SER GLN SEQRES 9 A 514 ARG LEU HIS SER LEU PHE THR LYS PRO TYR ASN THR GLU SEQRES 10 A 514 SER GLY ALA GLU THR LYS ARG VAL GLN ARG ALA VAL ALA SEQRES 11 A 514 THR ALA GLN LEU ILE ILE ASP VAL LEU ALA GLU THR GLY SEQRES 12 A 514 ASP ASP ASP GLU GLN ILE PRO ALA ALA LYS VAL ARG ILE SEQRES 13 A 514 GLY ILE ASP THR GLY LEU ALA LEU ALA VAL ASN ASN GLY SEQRES 14 A 514 ARG SER GLY TYR ARG GLU PRO LEU PHE LEU GLY ASP PRO SEQRES 15 A 514 ALA ASN HIS ALA ALA LYS LEU ALA SER ASN ASN LYS ALA SEQRES 16 A 514 ARG GLY ILE TYR LEU THR ASN ASN ALA ARG LYS ALA ILE SEQRES 17 A 514 GLY LEU ALA GLU SER ASP GLU PRO GLU LYS SER ALA LEU SEQRES 18 A 514 THR ALA ILE GLU ILE LYS ALA CYS GLN ASP ALA ALA LYS SEQRES 19 A 514 LEU ASP VAL THR SER ASP GLU ILE VAL GLU GLU TRP ARG SEQRES 20 A 514 GLU ASP LEU LYS LYS ASN PRO ILE GLY GLY TYR GLN PHE SEQRES 21 A 514 SER ARG GLN THR PRO PRO LEU ARG ASP MET ASP ILE TYR SEQRES 22 A 514 SER LEU THR PRO ALA ASN SER LYS ARG GLN GLU MET VAL SEQRES 23 A 514 SER LEU TYR ALA ASP ILE ASP GLY PHE THR ALA TYR VAL SEQRES 24 A 514 ALA ASP HIS ILE ASN GLU LYS THR ASP ASP VAL VAL ARG SEQRES 25 A 514 THR LEU HIS VAL ILE ARG SER GLU LEU GLU ARG VAL VAL SEQRES 26 A 514 THR SER ASP PHE GLU GLY ARG ARG VAL ARG PHE ILE GLY SEQRES 27 A 514 ASP CYS VAL GLN ALA LEU SER CYS ASP GLY THR ALA HIS SEQRES 28 A 514 THR THR ASP GLU GLU LYS SER VAL SER GLU ALA THR ARG SEQRES 29 A 514 LEU ALA GLY ALA LEU ARG SER SER PHE ASN LEU ALA ILE SEQRES 30 A 514 GLU ARG LEU ASN ALA GLU GLY ILE GLU THR GLY ASP LEU SEQRES 31 A 514 GLY LEU ALA ILE GLY PHE ASP LEU GLY PRO ILE ALA VAL SEQRES 32 A 514 THR ARG LEU GLY ALA LYS GLY ASN ARG VAL ARG CYS ALA SEQRES 33 A 514 ILE GLY ARG SER VAL ILE GLU SER GLU LYS ARG GLN CYS SEQRES 34 A 514 ALA CYS SER GLY VAL GLU THR ALA ILE GLY GLN VAL ALA SEQRES 35 A 514 TYR ASP ALA ALA SER LYS ALA VAL GLN ASN LEU PHE GLY SEQRES 36 A 514 LYS SER ARG LYS THR SER HIS LEU ASP TYR ASN GLU ALA SEQRES 37 A 514 THR GLU ALA LEU ALA ASP ASP GLY ASP ALA SER ALA LYS SEQRES 38 A 514 GLN ALA ARG SER GLU ALA TYR ALA GLY SER ALA ALA ILE SEQRES 39 A 514 ILE ARG ALA ASP GLU ARG GLN VAL GLN PRO HIS SER ARG SEQRES 40 A 514 GLN LYS VAL ASP GLY SER ARG HET ATP A 601 43 HET MN A 602 1 HET CA A 603 1 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET MG A 607 1 HET NA A 608 1 HET NA A 609 1 HET NA A 610 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MN MN 2+ FORMUL 4 CA CA 2+ FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 MG MG 2+ FORMUL 9 NA 3(NA 1+) FORMUL 12 HOH *642(H2 O) HELIX 1 AA1 ASN A 6 VAL A 21 1 16 HELIX 2 AA2 ASN A 57 ASN A 63 1 7 HELIX 3 AA3 GLY A 69 ASP A 95 1 27 HELIX 4 AA4 GLY A 119 ALA A 140 1 22 HELIX 5 AA5 ASP A 144 GLN A 148 5 5 HELIX 6 AA6 ARG A 170 ARG A 174 5 5 HELIX 7 AA7 GLY A 180 ASN A 192 1 13 HELIX 8 AA8 THR A 201 ILE A 208 1 8 HELIX 9 AA9 GLU A 215 SER A 219 5 5 HELIX 10 AB1 THR A 222 LYS A 234 1 13 HELIX 11 AB2 THR A 238 ASN A 253 1 16 HELIX 12 AB3 PRO A 266 MET A 270 5 5 HELIX 13 AB4 ASP A 271 LEU A 275 5 5 HELIX 14 AB5 THR A 276 ASN A 279 5 4 HELIX 15 AB6 GLY A 294 HIS A 302 1 9 HELIX 16 AB7 LYS A 306 SER A 327 1 22 HELIX 17 AB8 ASP A 354 GLU A 383 1 30 HELIX 18 AB9 GLY A 418 ALA A 430 1 13 HELIX 19 AC1 GLY A 439 ALA A 446 1 8 HELIX 20 AC2 SER A 447 GLY A 455 1 9 HELIX 21 AC3 ASP A 464 LEU A 472 1 9 SHEET 1 AA1 4 THR A 25 ASP A 28 0 SHEET 2 AA1 4 THR A 42 ILE A 55 1 O ARG A 45 N LYS A 27 SHEET 3 AA1 4 VAL A 154 ASN A 167 -1 O ARG A 155 N ASP A 54 SHEET 4 AA1 4 PRO A 176 LEU A 179 -1 O LEU A 179 N LEU A 164 SHEET 1 AA2 5 ARG A 97 HIS A 102 0 SHEET 2 AA2 5 ARG A 105 PHE A 110 -1 O ARG A 105 N HIS A 102 SHEET 3 AA2 5 THR A 42 ILE A 55 -1 N ALA A 53 O LEU A 106 SHEET 4 AA2 5 VAL A 154 ASN A 167 -1 O ARG A 155 N ASP A 54 SHEET 5 AA2 5 GLY A 197 LEU A 200 1 O GLY A 197 N ILE A 156 SHEET 1 AA3 4 PHE A 260 SER A 261 0 SHEET 2 AA3 4 SER A 280 ASP A 293 1 O ARG A 282 N SER A 261 SHEET 3 AA3 4 GLY A 391 LEU A 406 -1 O ALA A 393 N ASP A 291 SHEET 4 AA3 4 VAL A 413 ILE A 417 -1 O CYS A 415 N THR A 404 SHEET 1 AA4 6 ARG A 332 ILE A 337 0 SHEET 2 AA4 6 CYS A 340 SER A 345 -1 O GLN A 342 N VAL A 334 SHEET 3 AA4 6 SER A 280 ASP A 293 -1 N VAL A 286 O SER A 345 SHEET 4 AA4 6 GLY A 391 LEU A 406 -1 O ALA A 393 N ASP A 291 SHEET 5 AA4 6 GLU A 435 ILE A 438 1 O ALA A 437 N ILE A 394 SHEET 6 AA4 6 LYS A 459 SER A 461 -1 O THR A 460 N THR A 436 LINK O SER A 2 NA NA A 610 1555 1555 2.29 LINK OD2 ASP A 291 MN MN A 602 1555 1555 2.12 LINK OD1 ASP A 291 CA CA A 603 1555 1555 2.26 LINK O ILE A 292 CA CA A 603 1555 1555 2.40 LINK O ASER A 327 NA NA A 610 1555 1555 2.80 LINK O BSER A 327 NA NA A 610 1555 1555 2.85 LINK O ASP A 328 NA NA A 610 1555 1555 2.80 LINK O PHE A 329 NA NA A 609 1555 1555 2.52 LINK OE2 GLU A 330 NA NA A 610 1555 1555 2.64 LINK OD1 ASP A 339 CA CA A 603 1555 1555 2.52 LINK OD2 ASP A 339 CA CA A 603 1555 1555 2.40 LINK OG SER A 345 NA NA A 609 1555 1555 2.82 LINK O PHE A 454 MG MG A 607 1555 1555 2.35 LINK OG SER A 457 MG MG A 607 1555 1555 2.47 LINK O LYS A 459 MG MG A 607 1555 1555 2.43 LINK O2G ATP A 601 MN MN A 602 1555 1555 2.13 LINK O1B ATP A 601 MN MN A 602 1555 1555 2.22 LINK O2A ATP A 601 MN MN A 602 1555 1555 2.26 LINK O2G ATP A 601 CA CA A 603 1555 1555 2.39 LINK O3G ATP A 601 CA CA A 603 1555 1555 2.53 LINK MN MN A 602 O HOH A 817 1555 1555 2.18 LINK MN MN A 602 O HOH A1021 1555 1555 2.24 LINK CA CA A 603 O HOH A1010 1555 1555 2.37 LINK MG MG A 607 O HOH A 954 1555 1555 2.33 LINK MG MG A 607 O HOH A1119 1555 1555 2.34 LINK MG MG A 607 O HOH A1180 1555 1555 2.34 LINK NA NA A 608 O HOH A 740 1555 1555 2.67 LINK NA NA A 608 O HOH A 842 1555 1555 2.93 LINK NA NA A 609 O HOH A 718 1555 1555 2.58 LINK NA NA A 609 O HOH A1132 1555 1555 2.23 LINK NA NA A 610 O HOH A1012 1555 1555 2.20 CISPEP 1 LYS A 112 PRO A 113 0 1.62 CISPEP 2 PRO A 265 PRO A 266 0 2.08 SITE 1 AC1 30 LYS A 12 TYR A 52 ARG A 105 PHE A 178 SITE 2 AC1 30 ALA A 183 ASN A 184 ALA A 187 LYS A 188 SITE 3 AC1 30 ASP A 291 ILE A 292 GLY A 294 PHE A 295 SITE 4 AC1 30 THR A 296 ILE A 337 GLY A 338 ASP A 339 SITE 5 AC1 30 MN A 602 CA A 603 HOH A 791 HOH A 803 SITE 6 AC1 30 HOH A 831 HOH A 844 HOH A 912 HOH A 948 SITE 7 AC1 30 HOH A 989 HOH A 997 HOH A1010 HOH A1013 SITE 8 AC1 30 HOH A1021 HOH A1035 SITE 1 AC2 4 ASP A 291 ATP A 601 HOH A 817 HOH A1021 SITE 1 AC3 5 ASP A 291 ILE A 292 ASP A 339 ATP A 601 SITE 2 AC3 5 HOH A1010 SITE 1 AC4 8 ARG A 170 SER A 171 ARG A 405 VAL A 413 SITE 2 AC4 8 ARG A 414 HOH A 776 HOH A 879 HOH A 952 SITE 1 AC5 7 ARG A 170 SER A 171 ARG A 332 ARG A 333 SITE 2 AC5 7 ARG A 414 HOH A1059 HOH A1121 SITE 1 AC6 6 ARG A 405 GLY A 410 ASN A 411 ARG A 412 SITE 2 AC6 6 HOH A 836 HOH A 926 SITE 1 AC7 6 PHE A 454 SER A 457 LYS A 459 HOH A 954 SITE 2 AC7 6 HOH A1119 HOH A1180 SITE 1 AC8 6 ASP A 95 PHE A 110 THR A 111 LYS A 112 SITE 2 AC8 6 HOH A 740 HOH A 842 SITE 1 AC9 5 LYS A 3 PHE A 329 SER A 345 HOH A 718 SITE 2 AC9 5 HOH A1132 SITE 1 AD1 5 SER A 2 SER A 327 ASP A 328 GLU A 330 SITE 2 AD1 5 HOH A1012 CRYST1 62.400 74.680 149.680 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016026 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013390 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006681 0.00000