HEADER HYDROLASE 01-APR-20 6YIR TITLE CRYSTAL STRUCTURE OF BACILLUS SUBTILIS MSMX ATPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGOSACCHARIDES IMPORT ATP-BINDING PROTEIN MSMX; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX, COMPND 5 MELIBIOSE/RAFFINOSE/STACHYOSE IMPORT ATP-BINDING PROTEIN MSMX; COMPND 6 EC: 7.5.2.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: MSMX, YXKG, BSU38810; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATPASE, POLYSACCHARIDE IMPORT, MULTITASK, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.LEISICO,T.SANTOS-SILVA,M.J.ROMAO REVDAT 3 24-JAN-24 6YIR 1 SHEET REVDAT 2 25-NOV-20 6YIR 1 JRNL REVDAT 1 18-NOV-20 6YIR 0 JRNL AUTH F.LEISICO,L.M.GODINHO,I.C.GONCALVES,S.P.SILVA,B.CARNEIRO, JRNL AUTH 2 M.J.ROMAO,T.SANTOS-SILVA,I.DE SA-NOGUEIRA JRNL TITL MULTITASK ATPASES (NBDS) OF BACTERIAL ABC IMPORTERS TYPE I JRNL TITL 2 AND THEIR INTERSPECIES EXCHANGEABILITY. JRNL REF SCI REP V. 10 19564 2020 JRNL REFN ESSN 2045-2322 JRNL PMID 33177617 JRNL DOI 10.1038/S41598-020-76444-0 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 65.3 REMARK 3 NUMBER OF REFLECTIONS : 38380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2135 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 2.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 9 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2912 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.926 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3032 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3021 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4083 ; 1.956 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6959 ; 1.032 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 379 ; 6.887 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;35.990 ;23.944 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 580 ;15.120 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;21.554 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 454 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3389 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 679 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6YIR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292106886. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41647 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 45.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1V43, 1Q12 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM AMMONIUM SULFATE, 100 MM HEPES REMARK 280 PH 7.5 AND 30% (W/V) POLYETHYLENE GLYCOL 400, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.37900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.12350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.13150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.37900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.12350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.13150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.37900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.12350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.13150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.37900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.12350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.13150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 368 REMARK 465 HIS A 369 REMARK 465 HIS A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 704 O HOH A 745 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 756 O HOH A 756 4555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 311 CD GLU A 311 OE1 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 95 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 114 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 LEU A 135 CB - CG - CD1 ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG A 365 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 365 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 13 -130.76 -108.15 REMARK 500 LYS A 30 -2.01 78.98 REMARK 500 SER A 39 136.47 -38.93 REMARK 500 ASP A 249 96.54 -69.87 REMARK 500 SER A 321 -155.94 -151.74 REMARK 500 ASP A 324 -115.91 52.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 756 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A 757 DISTANCE = 7.20 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 402 DBREF 6YIR A 1 365 UNP P94360 MSMX_BACSU 1 365 SEQADV 6YIR ALA A 43 UNP P94360 LYS 43 ENGINEERED MUTATION SEQADV 6YIR LEU A 366 UNP P94360 EXPRESSION TAG SEQADV 6YIR GLU A 367 UNP P94360 EXPRESSION TAG SEQADV 6YIR HIS A 368 UNP P94360 EXPRESSION TAG SEQADV 6YIR HIS A 369 UNP P94360 EXPRESSION TAG SEQADV 6YIR HIS A 370 UNP P94360 EXPRESSION TAG SEQADV 6YIR HIS A 371 UNP P94360 EXPRESSION TAG SEQADV 6YIR HIS A 372 UNP P94360 EXPRESSION TAG SEQADV 6YIR HIS A 373 UNP P94360 EXPRESSION TAG SEQRES 1 A 373 MET ALA GLU LEU ARG MET GLU HIS ILE TYR LYS PHE TYR SEQRES 2 A 373 ASP GLN LYS GLU PRO ALA VAL ASP ASP PHE ASN LEU HIS SEQRES 3 A 373 ILE ALA ASP LYS GLU PHE ILE VAL PHE VAL GLY PRO SER SEQRES 4 A 373 GLY CYS GLY ALA SER THR THR LEU ARG MET VAL ALA GLY SEQRES 5 A 373 LEU GLU GLU ILE SER LYS GLY ASP PHE TYR ILE GLU GLY SEQRES 6 A 373 LYS ARG VAL ASN ASP VAL ALA PRO LYS ASP ARG ASP ILE SEQRES 7 A 373 ALA MET VAL PHE GLN ASN TYR ALA LEU TYR PRO HIS MET SEQRES 8 A 373 THR VAL TYR ASP ASN ILE ALA PHE GLY LEU LYS LEU ARG SEQRES 9 A 373 LYS MET PRO LYS PRO GLU ILE LYS LYS ARG VAL GLU GLU SEQRES 10 A 373 ALA ALA LYS ILE LEU GLY LEU GLU GLU TYR LEU HIS ARG SEQRES 11 A 373 LYS PRO LYS ALA LEU SER GLY GLY GLN ARG GLN ARG VAL SEQRES 12 A 373 ALA LEU GLY ARG ALA ILE VAL ARG ASP ALA LYS VAL PHE SEQRES 13 A 373 LEU MET ASP GLU PRO LEU SER ASN LEU ASP ALA LYS LEU SEQRES 14 A 373 ARG VAL GLN MET ARG ALA GLU ILE ILE LYS LEU HIS GLN SEQRES 15 A 373 ARG LEU GLN THR THR THR ILE TYR VAL THR HIS ASP GLN SEQRES 16 A 373 THR GLU ALA LEU THR MET ALA THR ARG ILE VAL VAL MET SEQRES 17 A 373 LYS ASP GLY LYS ILE GLN GLN ILE GLY THR PRO LYS ASP SEQRES 18 A 373 VAL TYR GLU PHE PRO GLU ASN VAL PHE VAL GLY GLY PHE SEQRES 19 A 373 ILE GLY SER PRO ALA MET ASN PHE PHE LYS GLY LYS LEU SEQRES 20 A 373 THR ASP GLY LEU ILE LYS ILE GLY SER ALA ALA LEU THR SEQRES 21 A 373 VAL PRO GLU GLY LYS MET LYS VAL LEU ARG GLU LYS GLY SEQRES 22 A 373 TYR ILE GLY LYS GLU VAL ILE PHE GLY ILE ARG PRO GLU SEQRES 23 A 373 ASP ILE HIS ASP GLU LEU ILE VAL VAL GLU SER TYR LYS SEQRES 24 A 373 ASN SER SER ILE LYS ALA LYS ILE ASN VAL ALA GLU LEU SEQRES 25 A 373 LEU GLY SER GLU ILE MET ILE TYR SER GLN ILE ASP ASN SEQRES 26 A 373 GLN ASP PHE ILE ALA ARG ILE ASP ALA ARG LEU ASP ILE SEQRES 27 A 373 GLN SER GLY ASP GLU LEU THR VAL ALA PHE ASP MET ASN SEQRES 28 A 373 LYS GLY HIS PHE PHE ASP SER GLU THR GLU VAL ARG ILE SEQRES 29 A 373 ARG LEU GLU HIS HIS HIS HIS HIS HIS HET SO4 A 401 5 HET PGE A 402 10 HETNAM SO4 SULFATE ION HETNAM PGE TRIETHYLENE GLYCOL FORMUL 2 SO4 O4 S 2- FORMUL 3 PGE C6 H14 O4 FORMUL 4 HOH *257(H2 O) HELIX 1 1 ALA A 43 ALA A 51 1 9 HELIX 2 2 VAL A 93 ARG A 104 1 12 HELIX 3 3 LYS A 108 LEU A 122 1 15 HELIX 4 4 GLY A 137 ARG A 151 1 15 HELIX 5 5 ALA A 167 LEU A 184 1 18 HELIX 6 6 GLN A 195 MET A 201 1 7 HELIX 7 7 PRO A 219 GLU A 224 1 6 HELIX 8 8 VAL A 229 PHE A 234 1 6 HELIX 9 9 GLU A 263 LYS A 272 1 10 HELIX 10 10 PRO A 73 ASP A 75 1 3 HELIX 11 11 PRO A 132 ALA A 134 1 3 HELIX 12 12 PRO A 285 ASP A 287 1 3 HELIX 13 13 MET A 350 LYS A 352 1 3 SHEET 1 A21 LEU A 4 LYS A 11 0 SHEET 2 A21 VAL A 20 ILE A 27 0 SHEET 3 A21 PHE A 32 VAL A 36 0 SHEET 4 A21 ASP A 60 ILE A 63 0 SHEET 5 A21 LYS A 66 ARG A 67 0 SHEET 6 A21 ILE A 78 MET A 80 0 SHEET 7 A21 VAL A 155 ASP A 159 0 SHEET 8 A21 THR A 188 THR A 192 0 SHEET 9 A21 ARG A 204 LYS A 209 0 SHEET 10 A21 LYS A 212 GLY A 217 0 SHEET 11 A21 ASN A 241 THR A 248 0 SHEET 12 A21 LEU A 251 ILE A 254 0 SHEET 13 A21 ALA A 257 THR A 260 0 SHEET 14 A21 LYS A 277 ILE A 283 0 SHEET 15 A21 ILE A 288 ASP A 290 0 SHEET 16 A21 SER A 302 ILE A 307 0 SHEET 17 A21 VAL A 309 LEU A 313 0 SHEET 18 A21 GLU A 316 ILE A 323 0 SHEET 19 A21 GLN A 326 ASP A 333 0 SHEET 20 A21 ASP A 342 PHE A 348 0 SHEET 21 A21 HIS A 354 ASP A 357 0 CISPEP 1 SER A 237 PRO A 238 0 3.54 SITE 1 AC1 6 GLY A 40 CYS A 41 GLY A 42 ALA A 43 SITE 2 AC1 6 SER A 44 THR A 45 SITE 1 AC2 3 TYR A 223 VAL A 295 HOH A 521 CRYST1 86.758 94.247 132.263 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011526 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007561 0.00000