data_6YJ5 # _entry.id 6YJ5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6YJ5 pdb_00006yj5 10.2210/pdb6yj5/pdb WWPDB D_1292107683 ? ? EMDB EMD-10816 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-08-12 2 'Structure model' 1 1 2020-08-19 3 'Structure model' 1 2 2020-10-21 4 'Structure model' 1 3 2021-02-10 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 4 'Structure model' citation 5 4 'Structure model' citation_author 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' database_2 9 5 'Structure model' em_3d_fitting_list 10 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 2 'Structure model' '_citation.title' 8 2 'Structure model' '_citation.year' 9 3 'Structure model' '_citation.journal_volume' 10 3 'Structure model' '_citation.page_first' 11 3 'Structure model' '_citation.page_last' 12 3 'Structure model' '_citation_author.identifier_ORCID' 13 5 'Structure model' '_database_2.pdbx_DOI' 14 5 'Structure model' '_database_2.pdbx_database_accession' 15 5 'Structure model' '_em_3d_fitting_list.accession_code' 16 5 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 17 5 'Structure model' '_em_3d_fitting_list.source_name' 18 5 'Structure model' '_em_3d_fitting_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6YJ5 _pdbx_database_status.recvd_initial_deposition_date 2020-04-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'major complex' 6YJ4 unspecified EMDB 'major complex' EMD-10815 'other EM volume' EMDB 'Focused refinement cryo-EM structure of the yeast mitochondrial complex I sub-stoichiometric sulfur transferase subunit' EMD-10816 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hirst, J.' 1 0000-0001-8667-6797 'Grba, D.' 2 0000-0003-2915-951X # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary Nat.Struct.Mol.Biol. ? ? 1545-9985 ? ? 27 ? 855 862 'Intrinsic curvature of the HIV-1 CA hexamer underlies capsid topology and interaction with cyclophilin A.' 2020 ? 10.1038/s41594-020-0467-8 32747784 ? ? ? ? ? ? ? ? US ? ? 1 Nat.Struct.Mol.Biol. ? ? 1545-9985 ? ? 27 ? 892 900 'Mitochondrial complex I structure reveals ordered water molecules for catalysis and proton translocation.' 2020 ? 10.1038/s41594-020-0473-x 32747785 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ni, T.' 1 0000-0001-7268-0306 primary 'Gerard, S.' 2 0000-0002-2842-0360 primary 'Zhao, G.' 3 0000-0003-0330-1581 primary 'Dent, K.' 4 ? primary 'Ning, J.' 5 ? primary 'Zhou, J.' 6 ? primary 'Shi, J.' 7 ? primary 'Anderson-Daniels, J.' 8 ? primary 'Li, W.' 9 ? primary 'Jang, S.' 10 ? primary 'Engelman, A.N.' 11 ? primary 'Aiken, C.' 12 ? primary 'Zhang, P.' 13 0000-0003-1803-691X 1 'Grba, D.N.' 14 ? 1 'Hirst, J.' 15 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Rhodanese-like domain-containing protein' _entity.formula_weight 34661.117 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSKLISPAELAKRLSSKETKIFDATWYLPTPANVGKNAYDNYMKKRIPGALYFDIDAVNTPSKFPHMLPSPQTFENELTK LGVSSDSPIVVYDTQGVFSGPRLVWTFKVFGHDNVQFLNGFEAYTQLPGIPSRPDAYTWGIWDTQVPGKIDPADPPYKVT KARPELVKSFEDVLAIVEKHNGDGAKIRNEVTFIDARPNGRFTGKDAEPRAELSSGHVPGAYSIAFPEVVENGKFKSPEE LKALFASKGIDGSKPIISMCGSGVTACVIDLALEIAGIGSRDTNAVYDGSWTEWAQRAPTKYIVKEENLNEANRA ; _entity_poly.pdbx_seq_one_letter_code_can ;MSKLISPAELAKRLSSKETKIFDATWYLPTPANVGKNAYDNYMKKRIPGALYFDIDAVNTPSKFPHMLPSPQTFENELTK LGVSSDSPIVVYDTQGVFSGPRLVWTFKVFGHDNVQFLNGFEAYTQLPGIPSRPDAYTWGIWDTQVPGKIDPADPPYKVT KARPELVKSFEDVLAIVEKHNGDGAKIRNEVTFIDARPNGRFTGKDAEPRAELSSGHVPGAYSIAFPEVVENGKFKSPEE LKALFASKGIDGSKPIISMCGSGVTACVIDLALEIAGIGSRDTNAVYDGSWTEWAQRAPTKYIVKEENLNEANRA ; _entity_poly.pdbx_strand_id q _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 LYS n 1 4 LEU n 1 5 ILE n 1 6 SER n 1 7 PRO n 1 8 ALA n 1 9 GLU n 1 10 LEU n 1 11 ALA n 1 12 LYS n 1 13 ARG n 1 14 LEU n 1 15 SER n 1 16 SER n 1 17 LYS n 1 18 GLU n 1 19 THR n 1 20 LYS n 1 21 ILE n 1 22 PHE n 1 23 ASP n 1 24 ALA n 1 25 THR n 1 26 TRP n 1 27 TYR n 1 28 LEU n 1 29 PRO n 1 30 THR n 1 31 PRO n 1 32 ALA n 1 33 ASN n 1 34 VAL n 1 35 GLY n 1 36 LYS n 1 37 ASN n 1 38 ALA n 1 39 TYR n 1 40 ASP n 1 41 ASN n 1 42 TYR n 1 43 MET n 1 44 LYS n 1 45 LYS n 1 46 ARG n 1 47 ILE n 1 48 PRO n 1 49 GLY n 1 50 ALA n 1 51 LEU n 1 52 TYR n 1 53 PHE n 1 54 ASP n 1 55 ILE n 1 56 ASP n 1 57 ALA n 1 58 VAL n 1 59 ASN n 1 60 THR n 1 61 PRO n 1 62 SER n 1 63 LYS n 1 64 PHE n 1 65 PRO n 1 66 HIS n 1 67 MET n 1 68 LEU n 1 69 PRO n 1 70 SER n 1 71 PRO n 1 72 GLN n 1 73 THR n 1 74 PHE n 1 75 GLU n 1 76 ASN n 1 77 GLU n 1 78 LEU n 1 79 THR n 1 80 LYS n 1 81 LEU n 1 82 GLY n 1 83 VAL n 1 84 SER n 1 85 SER n 1 86 ASP n 1 87 SER n 1 88 PRO n 1 89 ILE n 1 90 VAL n 1 91 VAL n 1 92 TYR n 1 93 ASP n 1 94 THR n 1 95 GLN n 1 96 GLY n 1 97 VAL n 1 98 PHE n 1 99 SER n 1 100 GLY n 1 101 PRO n 1 102 ARG n 1 103 LEU n 1 104 VAL n 1 105 TRP n 1 106 THR n 1 107 PHE n 1 108 LYS n 1 109 VAL n 1 110 PHE n 1 111 GLY n 1 112 HIS n 1 113 ASP n 1 114 ASN n 1 115 VAL n 1 116 GLN n 1 117 PHE n 1 118 LEU n 1 119 ASN n 1 120 GLY n 1 121 PHE n 1 122 GLU n 1 123 ALA n 1 124 TYR n 1 125 THR n 1 126 GLN n 1 127 LEU n 1 128 PRO n 1 129 GLY n 1 130 ILE n 1 131 PRO n 1 132 SER n 1 133 ARG n 1 134 PRO n 1 135 ASP n 1 136 ALA n 1 137 TYR n 1 138 THR n 1 139 TRP n 1 140 GLY n 1 141 ILE n 1 142 TRP n 1 143 ASP n 1 144 THR n 1 145 GLN n 1 146 VAL n 1 147 PRO n 1 148 GLY n 1 149 LYS n 1 150 ILE n 1 151 ASP n 1 152 PRO n 1 153 ALA n 1 154 ASP n 1 155 PRO n 1 156 PRO n 1 157 TYR n 1 158 LYS n 1 159 VAL n 1 160 THR n 1 161 LYS n 1 162 ALA n 1 163 ARG n 1 164 PRO n 1 165 GLU n 1 166 LEU n 1 167 VAL n 1 168 LYS n 1 169 SER n 1 170 PHE n 1 171 GLU n 1 172 ASP n 1 173 VAL n 1 174 LEU n 1 175 ALA n 1 176 ILE n 1 177 VAL n 1 178 GLU n 1 179 LYS n 1 180 HIS n 1 181 ASN n 1 182 GLY n 1 183 ASP n 1 184 GLY n 1 185 ALA n 1 186 LYS n 1 187 ILE n 1 188 ARG n 1 189 ASN n 1 190 GLU n 1 191 VAL n 1 192 THR n 1 193 PHE n 1 194 ILE n 1 195 ASP n 1 196 ALA n 1 197 ARG n 1 198 PRO n 1 199 ASN n 1 200 GLY n 1 201 ARG n 1 202 PHE n 1 203 THR n 1 204 GLY n 1 205 LYS n 1 206 ASP n 1 207 ALA n 1 208 GLU n 1 209 PRO n 1 210 ARG n 1 211 ALA n 1 212 GLU n 1 213 LEU n 1 214 SER n 1 215 SER n 1 216 GLY n 1 217 HIS n 1 218 VAL n 1 219 PRO n 1 220 GLY n 1 221 ALA n 1 222 TYR n 1 223 SER n 1 224 ILE n 1 225 ALA n 1 226 PHE n 1 227 PRO n 1 228 GLU n 1 229 VAL n 1 230 VAL n 1 231 GLU n 1 232 ASN n 1 233 GLY n 1 234 LYS n 1 235 PHE n 1 236 LYS n 1 237 SER n 1 238 PRO n 1 239 GLU n 1 240 GLU n 1 241 LEU n 1 242 LYS n 1 243 ALA n 1 244 LEU n 1 245 PHE n 1 246 ALA n 1 247 SER n 1 248 LYS n 1 249 GLY n 1 250 ILE n 1 251 ASP n 1 252 GLY n 1 253 SER n 1 254 LYS n 1 255 PRO n 1 256 ILE n 1 257 ILE n 1 258 SER n 1 259 MET n 1 260 CYS n 1 261 GLY n 1 262 SER n 1 263 GLY n 1 264 VAL n 1 265 THR n 1 266 ALA n 1 267 CYS n 1 268 VAL n 1 269 ILE n 1 270 ASP n 1 271 LEU n 1 272 ALA n 1 273 LEU n 1 274 GLU n 1 275 ILE n 1 276 ALA n 1 277 GLY n 1 278 ILE n 1 279 GLY n 1 280 SER n 1 281 ARG n 1 282 ASP n 1 283 THR n 1 284 ASN n 1 285 ALA n 1 286 VAL n 1 287 TYR n 1 288 ASP n 1 289 GLY n 1 290 SER n 1 291 TRP n 1 292 THR n 1 293 GLU n 1 294 TRP n 1 295 ALA n 1 296 GLN n 1 297 ARG n 1 298 ALA n 1 299 PRO n 1 300 THR n 1 301 LYS n 1 302 TYR n 1 303 ILE n 1 304 VAL n 1 305 LYS n 1 306 GLU n 1 307 GLU n 1 308 ASN n 1 309 LEU n 1 310 ASN n 1 311 GLU n 1 312 ALA n 1 313 ASN n 1 314 ARG n 1 315 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 315 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'B0I71DRAFT_128700, YALI1_F30877g' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Yarrowia lipolytica' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4952 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Yarrowia lipolytica' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4952 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? q . n A 1 2 SER 2 2 2 SER SER q . n A 1 3 LYS 3 3 3 LYS LYS q . n A 1 4 LEU 4 4 4 LEU LEU q . n A 1 5 ILE 5 5 5 ILE ILE q . n A 1 6 SER 6 6 6 SER SER q . n A 1 7 PRO 7 7 7 PRO PRO q . n A 1 8 ALA 8 8 8 ALA ALA q . n A 1 9 GLU 9 9 9 GLU GLU q . n A 1 10 LEU 10 10 10 LEU LEU q . n A 1 11 ALA 11 11 11 ALA ALA q . n A 1 12 LYS 12 12 12 LYS LYS q . n A 1 13 ARG 13 13 13 ARG ARG q . n A 1 14 LEU 14 14 14 LEU LEU q . n A 1 15 SER 15 15 15 SER SER q . n A 1 16 SER 16 16 16 SER SER q . n A 1 17 LYS 17 17 17 LYS LYS q . n A 1 18 GLU 18 18 18 GLU GLU q . n A 1 19 THR 19 19 19 THR THR q . n A 1 20 LYS 20 20 20 LYS LYS q . n A 1 21 ILE 21 21 21 ILE ILE q . n A 1 22 PHE 22 22 22 PHE PHE q . n A 1 23 ASP 23 23 23 ASP ASP q . n A 1 24 ALA 24 24 24 ALA ALA q . n A 1 25 THR 25 25 25 THR THR q . n A 1 26 TRP 26 26 26 TRP TRP q . n A 1 27 TYR 27 27 27 TYR TYR q . n A 1 28 LEU 28 28 28 LEU LEU q . n A 1 29 PRO 29 29 29 PRO PRO q . n A 1 30 THR 30 30 30 THR THR q . n A 1 31 PRO 31 31 31 PRO PRO q . n A 1 32 ALA 32 32 32 ALA ALA q . n A 1 33 ASN 33 33 33 ASN ASN q . n A 1 34 VAL 34 34 34 VAL VAL q . n A 1 35 GLY 35 35 35 GLY GLY q . n A 1 36 LYS 36 36 36 LYS LYS q . n A 1 37 ASN 37 37 37 ASN ASN q . n A 1 38 ALA 38 38 38 ALA ALA q . n A 1 39 TYR 39 39 39 TYR TYR q . n A 1 40 ASP 40 40 40 ASP ASP q . n A 1 41 ASN 41 41 41 ASN ASN q . n A 1 42 TYR 42 42 42 TYR TYR q . n A 1 43 MET 43 43 43 MET MET q . n A 1 44 LYS 44 44 44 LYS LYS q . n A 1 45 LYS 45 45 45 LYS LYS q . n A 1 46 ARG 46 46 46 ARG ARG q . n A 1 47 ILE 47 47 47 ILE ILE q . n A 1 48 PRO 48 48 48 PRO PRO q . n A 1 49 GLY 49 49 49 GLY GLY q . n A 1 50 ALA 50 50 50 ALA ALA q . n A 1 51 LEU 51 51 51 LEU LEU q . n A 1 52 TYR 52 52 52 TYR TYR q . n A 1 53 PHE 53 53 53 PHE PHE q . n A 1 54 ASP 54 54 54 ASP ASP q . n A 1 55 ILE 55 55 55 ILE ILE q . n A 1 56 ASP 56 56 56 ASP ASP q . n A 1 57 ALA 57 57 57 ALA ALA q . n A 1 58 VAL 58 58 58 VAL VAL q . n A 1 59 ASN 59 59 59 ASN ASN q . n A 1 60 THR 60 60 60 THR THR q . n A 1 61 PRO 61 61 61 PRO PRO q . n A 1 62 SER 62 62 62 SER SER q . n A 1 63 LYS 63 63 63 LYS LYS q . n A 1 64 PHE 64 64 64 PHE PHE q . n A 1 65 PRO 65 65 65 PRO PRO q . n A 1 66 HIS 66 66 66 HIS HIS q . n A 1 67 MET 67 67 67 MET MET q . n A 1 68 LEU 68 68 68 LEU LEU q . n A 1 69 PRO 69 69 69 PRO PRO q . n A 1 70 SER 70 70 70 SER SER q . n A 1 71 PRO 71 71 71 PRO PRO q . n A 1 72 GLN 72 72 72 GLN GLN q . n A 1 73 THR 73 73 73 THR THR q . n A 1 74 PHE 74 74 74 PHE PHE q . n A 1 75 GLU 75 75 75 GLU GLU q . n A 1 76 ASN 76 76 76 ASN ASN q . n A 1 77 GLU 77 77 77 GLU GLU q . n A 1 78 LEU 78 78 78 LEU LEU q . n A 1 79 THR 79 79 79 THR THR q . n A 1 80 LYS 80 80 80 LYS LYS q . n A 1 81 LEU 81 81 81 LEU LEU q . n A 1 82 GLY 82 82 82 GLY GLY q . n A 1 83 VAL 83 83 83 VAL VAL q . n A 1 84 SER 84 84 84 SER SER q . n A 1 85 SER 85 85 85 SER SER q . n A 1 86 ASP 86 86 86 ASP ASP q . n A 1 87 SER 87 87 87 SER SER q . n A 1 88 PRO 88 88 88 PRO PRO q . n A 1 89 ILE 89 89 89 ILE ILE q . n A 1 90 VAL 90 90 90 VAL VAL q . n A 1 91 VAL 91 91 91 VAL VAL q . n A 1 92 TYR 92 92 92 TYR TYR q . n A 1 93 ASP 93 93 93 ASP ASP q . n A 1 94 THR 94 94 94 THR THR q . n A 1 95 GLN 95 95 95 GLN GLN q . n A 1 96 GLY 96 96 96 GLY GLY q . n A 1 97 VAL 97 97 97 VAL VAL q . n A 1 98 PHE 98 98 98 PHE PHE q . n A 1 99 SER 99 99 99 SER SER q . n A 1 100 GLY 100 100 100 GLY GLY q . n A 1 101 PRO 101 101 101 PRO PRO q . n A 1 102 ARG 102 102 102 ARG ARG q . n A 1 103 LEU 103 103 103 LEU LEU q . n A 1 104 VAL 104 104 104 VAL VAL q . n A 1 105 TRP 105 105 105 TRP TRP q . n A 1 106 THR 106 106 106 THR THR q . n A 1 107 PHE 107 107 107 PHE PHE q . n A 1 108 LYS 108 108 108 LYS LYS q . n A 1 109 VAL 109 109 109 VAL VAL q . n A 1 110 PHE 110 110 110 PHE PHE q . n A 1 111 GLY 111 111 111 GLY GLY q . n A 1 112 HIS 112 112 112 HIS HIS q . n A 1 113 ASP 113 113 113 ASP ASP q . n A 1 114 ASN 114 114 114 ASN ASN q . n A 1 115 VAL 115 115 115 VAL VAL q . n A 1 116 GLN 116 116 116 GLN GLN q . n A 1 117 PHE 117 117 117 PHE PHE q . n A 1 118 LEU 118 118 118 LEU LEU q . n A 1 119 ASN 119 119 119 ASN ASN q . n A 1 120 GLY 120 120 120 GLY GLY q . n A 1 121 PHE 121 121 121 PHE PHE q . n A 1 122 GLU 122 122 122 GLU GLU q . n A 1 123 ALA 123 123 123 ALA ALA q . n A 1 124 TYR 124 124 124 TYR TYR q . n A 1 125 THR 125 125 125 THR THR q . n A 1 126 GLN 126 126 126 GLN GLN q . n A 1 127 LEU 127 127 127 LEU LEU q . n A 1 128 PRO 128 128 128 PRO PRO q . n A 1 129 GLY 129 129 129 GLY GLY q . n A 1 130 ILE 130 130 130 ILE ILE q . n A 1 131 PRO 131 131 131 PRO PRO q . n A 1 132 SER 132 132 132 SER SER q . n A 1 133 ARG 133 133 133 ARG ARG q . n A 1 134 PRO 134 134 134 PRO PRO q . n A 1 135 ASP 135 135 135 ASP ASP q . n A 1 136 ALA 136 136 136 ALA ALA q . n A 1 137 TYR 137 137 137 TYR TYR q . n A 1 138 THR 138 138 138 THR THR q . n A 1 139 TRP 139 139 139 TRP TRP q . n A 1 140 GLY 140 140 140 GLY GLY q . n A 1 141 ILE 141 141 141 ILE ILE q . n A 1 142 TRP 142 142 142 TRP TRP q . n A 1 143 ASP 143 143 143 ASP ASP q . n A 1 144 THR 144 144 144 THR THR q . n A 1 145 GLN 145 145 145 GLN GLN q . n A 1 146 VAL 146 146 146 VAL VAL q . n A 1 147 PRO 147 147 147 PRO PRO q . n A 1 148 GLY 148 148 148 GLY GLY q . n A 1 149 LYS 149 149 149 LYS LYS q . n A 1 150 ILE 150 150 150 ILE ILE q . n A 1 151 ASP 151 151 151 ASP ASP q . n A 1 152 PRO 152 152 152 PRO PRO q . n A 1 153 ALA 153 153 153 ALA ALA q . n A 1 154 ASP 154 154 154 ASP ASP q . n A 1 155 PRO 155 155 155 PRO PRO q . n A 1 156 PRO 156 156 156 PRO PRO q . n A 1 157 TYR 157 157 157 TYR TYR q . n A 1 158 LYS 158 158 158 LYS LYS q . n A 1 159 VAL 159 159 159 VAL VAL q . n A 1 160 THR 160 160 160 THR THR q . n A 1 161 LYS 161 161 161 LYS LYS q . n A 1 162 ALA 162 162 162 ALA ALA q . n A 1 163 ARG 163 163 163 ARG ARG q . n A 1 164 PRO 164 164 164 PRO PRO q . n A 1 165 GLU 165 165 165 GLU GLU q . n A 1 166 LEU 166 166 166 LEU LEU q . n A 1 167 VAL 167 167 167 VAL VAL q . n A 1 168 LYS 168 168 168 LYS LYS q . n A 1 169 SER 169 169 169 SER SER q . n A 1 170 PHE 170 170 170 PHE PHE q . n A 1 171 GLU 171 171 171 GLU GLU q . n A 1 172 ASP 172 172 172 ASP ASP q . n A 1 173 VAL 173 173 173 VAL VAL q . n A 1 174 LEU 174 174 174 LEU LEU q . n A 1 175 ALA 175 175 175 ALA ALA q . n A 1 176 ILE 176 176 176 ILE ILE q . n A 1 177 VAL 177 177 177 VAL VAL q . n A 1 178 GLU 178 178 178 GLU GLU q . n A 1 179 LYS 179 179 179 LYS LYS q . n A 1 180 HIS 180 180 180 HIS HIS q . n A 1 181 ASN 181 181 181 ASN ASN q . n A 1 182 GLY 182 182 182 GLY GLY q . n A 1 183 ASP 183 183 183 ASP ASP q . n A 1 184 GLY 184 184 184 GLY GLY q . n A 1 185 ALA 185 185 185 ALA ALA q . n A 1 186 LYS 186 186 186 LYS LYS q . n A 1 187 ILE 187 187 187 ILE ILE q . n A 1 188 ARG 188 188 188 ARG ARG q . n A 1 189 ASN 189 189 189 ASN ASN q . n A 1 190 GLU 190 190 190 GLU GLU q . n A 1 191 VAL 191 191 191 VAL VAL q . n A 1 192 THR 192 192 192 THR THR q . n A 1 193 PHE 193 193 193 PHE PHE q . n A 1 194 ILE 194 194 194 ILE ILE q . n A 1 195 ASP 195 195 195 ASP ASP q . n A 1 196 ALA 196 196 196 ALA ALA q . n A 1 197 ARG 197 197 197 ARG ARG q . n A 1 198 PRO 198 198 198 PRO PRO q . n A 1 199 ASN 199 199 199 ASN ASN q . n A 1 200 GLY 200 200 200 GLY GLY q . n A 1 201 ARG 201 201 201 ARG ARG q . n A 1 202 PHE 202 202 202 PHE PHE q . n A 1 203 THR 203 203 203 THR THR q . n A 1 204 GLY 204 204 204 GLY GLY q . n A 1 205 LYS 205 205 205 LYS LYS q . n A 1 206 ASP 206 206 206 ASP ASP q . n A 1 207 ALA 207 207 207 ALA ALA q . n A 1 208 GLU 208 208 208 GLU GLU q . n A 1 209 PRO 209 209 209 PRO PRO q . n A 1 210 ARG 210 210 210 ARG ARG q . n A 1 211 ALA 211 211 211 ALA ALA q . n A 1 212 GLU 212 212 212 GLU GLU q . n A 1 213 LEU 213 213 213 LEU LEU q . n A 1 214 SER 214 214 214 SER SER q . n A 1 215 SER 215 215 215 SER SER q . n A 1 216 GLY 216 216 216 GLY GLY q . n A 1 217 HIS 217 217 217 HIS HIS q . n A 1 218 VAL 218 218 218 VAL VAL q . n A 1 219 PRO 219 219 219 PRO PRO q . n A 1 220 GLY 220 220 220 GLY GLY q . n A 1 221 ALA 221 221 221 ALA ALA q . n A 1 222 TYR 222 222 222 TYR TYR q . n A 1 223 SER 223 223 223 SER SER q . n A 1 224 ILE 224 224 224 ILE ILE q . n A 1 225 ALA 225 225 225 ALA ALA q . n A 1 226 PHE 226 226 226 PHE PHE q . n A 1 227 PRO 227 227 227 PRO PRO q . n A 1 228 GLU 228 228 228 GLU GLU q . n A 1 229 VAL 229 229 229 VAL VAL q . n A 1 230 VAL 230 230 230 VAL VAL q . n A 1 231 GLU 231 231 231 GLU GLU q . n A 1 232 ASN 232 232 232 ASN ASN q . n A 1 233 GLY 233 233 233 GLY GLY q . n A 1 234 LYS 234 234 234 LYS LYS q . n A 1 235 PHE 235 235 235 PHE PHE q . n A 1 236 LYS 236 236 236 LYS LYS q . n A 1 237 SER 237 237 237 SER SER q . n A 1 238 PRO 238 238 238 PRO PRO q . n A 1 239 GLU 239 239 239 GLU GLU q . n A 1 240 GLU 240 240 240 GLU GLU q . n A 1 241 LEU 241 241 241 LEU LEU q . n A 1 242 LYS 242 242 242 LYS LYS q . n A 1 243 ALA 243 243 243 ALA ALA q . n A 1 244 LEU 244 244 244 LEU LEU q . n A 1 245 PHE 245 245 245 PHE PHE q . n A 1 246 ALA 246 246 246 ALA ALA q . n A 1 247 SER 247 247 247 SER SER q . n A 1 248 LYS 248 248 248 LYS LYS q . n A 1 249 GLY 249 249 249 GLY GLY q . n A 1 250 ILE 250 250 250 ILE ILE q . n A 1 251 ASP 251 251 251 ASP ASP q . n A 1 252 GLY 252 252 252 GLY GLY q . n A 1 253 SER 253 253 253 SER SER q . n A 1 254 LYS 254 254 254 LYS LYS q . n A 1 255 PRO 255 255 255 PRO PRO q . n A 1 256 ILE 256 256 256 ILE ILE q . n A 1 257 ILE 257 257 257 ILE ILE q . n A 1 258 SER 258 258 258 SER SER q . n A 1 259 MET 259 259 259 MET MET q . n A 1 260 CYS 260 260 260 CYS CYS q . n A 1 261 GLY 261 261 261 GLY GLY q . n A 1 262 SER 262 262 262 SER SER q . n A 1 263 GLY 263 263 263 GLY GLY q . n A 1 264 VAL 264 264 264 VAL VAL q . n A 1 265 THR 265 265 265 THR THR q . n A 1 266 ALA 266 266 266 ALA ALA q . n A 1 267 CYS 267 267 267 CYS CYS q . n A 1 268 VAL 268 268 268 VAL VAL q . n A 1 269 ILE 269 269 269 ILE ILE q . n A 1 270 ASP 270 270 270 ASP ASP q . n A 1 271 LEU 271 271 271 LEU LEU q . n A 1 272 ALA 272 272 272 ALA ALA q . n A 1 273 LEU 273 273 273 LEU LEU q . n A 1 274 GLU 274 274 274 GLU GLU q . n A 1 275 ILE 275 275 275 ILE ILE q . n A 1 276 ALA 276 276 276 ALA ALA q . n A 1 277 GLY 277 277 277 GLY GLY q . n A 1 278 ILE 278 278 278 ILE ILE q . n A 1 279 GLY 279 279 279 GLY GLY q . n A 1 280 SER 280 280 280 SER SER q . n A 1 281 ARG 281 281 281 ARG ARG q . n A 1 282 ASP 282 282 282 ASP ASP q . n A 1 283 THR 283 283 283 THR THR q . n A 1 284 ASN 284 284 284 ASN ASN q . n A 1 285 ALA 285 285 285 ALA ALA q . n A 1 286 VAL 286 286 286 VAL VAL q . n A 1 287 TYR 287 287 287 TYR TYR q . n A 1 288 ASP 288 288 288 ASP ASP q . n A 1 289 GLY 289 289 289 GLY GLY q . n A 1 290 SER 290 290 290 SER SER q . n A 1 291 TRP 291 291 291 TRP TRP q . n A 1 292 THR 292 292 292 THR THR q . n A 1 293 GLU 293 293 293 GLU GLU q . n A 1 294 TRP 294 294 294 TRP TRP q . n A 1 295 ALA 295 295 295 ALA ALA q . n A 1 296 GLN 296 296 296 GLN GLN q . n A 1 297 ARG 297 297 297 ARG ARG q . n A 1 298 ALA 298 298 298 ALA ALA q . n A 1 299 PRO 299 299 299 PRO PRO q . n A 1 300 THR 300 300 300 THR THR q . n A 1 301 LYS 301 301 301 LYS LYS q . n A 1 302 TYR 302 302 302 TYR TYR q . n A 1 303 ILE 303 303 303 ILE ILE q . n A 1 304 VAL 304 304 304 VAL VAL q . n A 1 305 LYS 305 305 305 LYS LYS q . n A 1 306 GLU 306 306 306 GLU GLU q . n A 1 307 GLU 307 307 307 GLU GLU q . n A 1 308 ASN 308 308 ? ? ? q . n A 1 309 LEU 309 309 ? ? ? q . n A 1 310 ASN 310 310 ? ? ? q . n A 1 311 GLU 311 311 ? ? ? q . n A 1 312 ALA 312 312 ? ? ? q . n A 1 313 ASN 313 313 ? ? ? q . n A 1 314 ARG 314 314 ? ? ? q . n A 1 315 ALA 315 315 ? ? ? q . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 q THR 30 ? OG1 ? A THR 30 OG1 2 1 Y 1 q THR 30 ? CG2 ? A THR 30 CG2 3 1 Y 1 q PRO 31 ? CG ? A PRO 31 CG 4 1 Y 1 q PRO 31 ? CD ? A PRO 31 CD 5 1 Y 1 q ASN 33 ? CG ? A ASN 33 CG 6 1 Y 1 q ASN 33 ? OD1 ? A ASN 33 OD1 7 1 Y 1 q ASN 33 ? ND2 ? A ASN 33 ND2 8 1 Y 1 q VAL 34 ? CG1 ? A VAL 34 CG1 9 1 Y 1 q VAL 34 ? CG2 ? A VAL 34 CG2 10 1 Y 1 q LYS 36 ? CG ? A LYS 36 CG 11 1 Y 1 q LYS 36 ? CD ? A LYS 36 CD 12 1 Y 1 q LYS 36 ? CE ? A LYS 36 CE 13 1 Y 1 q LYS 36 ? NZ ? A LYS 36 NZ 14 1 Y 1 q LYS 45 ? CG ? A LYS 45 CG 15 1 Y 1 q LYS 45 ? CD ? A LYS 45 CD 16 1 Y 1 q LYS 45 ? CE ? A LYS 45 CE 17 1 Y 1 q LYS 45 ? NZ ? A LYS 45 NZ 18 1 Y 1 q ASP 54 ? CG ? A ASP 54 CG 19 1 Y 1 q ASP 54 ? OD1 ? A ASP 54 OD1 20 1 Y 1 q ASP 54 ? OD2 ? A ASP 54 OD2 21 1 Y 1 q ILE 55 ? CG1 ? A ILE 55 CG1 22 1 Y 1 q ILE 55 ? CG2 ? A ILE 55 CG2 23 1 Y 1 q ILE 55 ? CD1 ? A ILE 55 CD1 24 1 Y 1 q ASP 56 ? CG ? A ASP 56 CG 25 1 Y 1 q ASP 56 ? OD1 ? A ASP 56 OD1 26 1 Y 1 q ASP 56 ? OD2 ? A ASP 56 OD2 27 1 Y 1 q VAL 58 ? CG1 ? A VAL 58 CG1 28 1 Y 1 q VAL 58 ? CG2 ? A VAL 58 CG2 29 1 Y 1 q ASN 59 ? CG ? A ASN 59 CG 30 1 Y 1 q ASN 59 ? OD1 ? A ASN 59 OD1 31 1 Y 1 q ASN 59 ? ND2 ? A ASN 59 ND2 32 1 Y 1 q THR 60 ? OG1 ? A THR 60 OG1 33 1 Y 1 q THR 60 ? CG2 ? A THR 60 CG2 34 1 Y 1 q PRO 61 ? CG ? A PRO 61 CG 35 1 Y 1 q PRO 61 ? CD ? A PRO 61 CD 36 1 Y 1 q SER 62 ? OG ? A SER 62 OG 37 1 Y 1 q LYS 63 ? CG ? A LYS 63 CG 38 1 Y 1 q LYS 63 ? CD ? A LYS 63 CD 39 1 Y 1 q LYS 63 ? CE ? A LYS 63 CE 40 1 Y 1 q LYS 63 ? NZ ? A LYS 63 NZ 41 1 Y 1 q PHE 64 ? CG ? A PHE 64 CG 42 1 Y 1 q PHE 64 ? CD1 ? A PHE 64 CD1 43 1 Y 1 q PHE 64 ? CD2 ? A PHE 64 CD2 44 1 Y 1 q PHE 64 ? CE1 ? A PHE 64 CE1 45 1 Y 1 q PHE 64 ? CE2 ? A PHE 64 CE2 46 1 Y 1 q PHE 64 ? CZ ? A PHE 64 CZ 47 1 Y 1 q PRO 65 ? CG ? A PRO 65 CG 48 1 Y 1 q PRO 65 ? CD ? A PRO 65 CD 49 1 Y 1 q HIS 66 ? CG ? A HIS 66 CG 50 1 Y 1 q HIS 66 ? ND1 ? A HIS 66 ND1 51 1 Y 1 q HIS 66 ? CD2 ? A HIS 66 CD2 52 1 Y 1 q HIS 66 ? CE1 ? A HIS 66 CE1 53 1 Y 1 q HIS 66 ? NE2 ? A HIS 66 NE2 54 1 Y 1 q TRP 139 ? CG ? A TRP 139 CG 55 1 Y 1 q TRP 139 ? CD1 ? A TRP 139 CD1 56 1 Y 1 q TRP 139 ? CD2 ? A TRP 139 CD2 57 1 Y 1 q TRP 139 ? NE1 ? A TRP 139 NE1 58 1 Y 1 q TRP 139 ? CE2 ? A TRP 139 CE2 59 1 Y 1 q TRP 139 ? CE3 ? A TRP 139 CE3 60 1 Y 1 q TRP 139 ? CZ2 ? A TRP 139 CZ2 61 1 Y 1 q TRP 139 ? CZ3 ? A TRP 139 CZ3 62 1 Y 1 q TRP 139 ? CH2 ? A TRP 139 CH2 63 1 Y 1 q THR 144 ? OG1 ? A THR 144 OG1 64 1 Y 1 q THR 144 ? CG2 ? A THR 144 CG2 65 1 Y 1 q GLN 145 ? CG ? A GLN 145 CG 66 1 Y 1 q GLN 145 ? CD ? A GLN 145 CD 67 1 Y 1 q GLN 145 ? OE1 ? A GLN 145 OE1 68 1 Y 1 q GLN 145 ? NE2 ? A GLN 145 NE2 69 1 Y 1 q VAL 146 ? CG1 ? A VAL 146 CG1 70 1 Y 1 q VAL 146 ? CG2 ? A VAL 146 CG2 71 1 Y 1 q PRO 147 ? CG ? A PRO 147 CG 72 1 Y 1 q PRO 147 ? CD ? A PRO 147 CD 73 1 Y 1 q LYS 149 ? CG ? A LYS 149 CG 74 1 Y 1 q LYS 149 ? CD ? A LYS 149 CD 75 1 Y 1 q LYS 149 ? CE ? A LYS 149 CE 76 1 Y 1 q LYS 149 ? NZ ? A LYS 149 NZ 77 1 Y 1 q SER 169 ? OG ? A SER 169 OG 78 1 Y 1 q PHE 170 ? CG ? A PHE 170 CG 79 1 Y 1 q PHE 170 ? CD1 ? A PHE 170 CD1 80 1 Y 1 q PHE 170 ? CD2 ? A PHE 170 CD2 81 1 Y 1 q PHE 170 ? CE1 ? A PHE 170 CE1 82 1 Y 1 q PHE 170 ? CE2 ? A PHE 170 CE2 83 1 Y 1 q PHE 170 ? CZ ? A PHE 170 CZ 84 1 Y 1 q GLU 171 ? CG ? A GLU 171 CG 85 1 Y 1 q GLU 171 ? CD ? A GLU 171 CD 86 1 Y 1 q GLU 171 ? OE1 ? A GLU 171 OE1 87 1 Y 1 q GLU 171 ? OE2 ? A GLU 171 OE2 88 1 Y 1 q ASP 172 ? CG ? A ASP 172 CG 89 1 Y 1 q ASP 172 ? OD1 ? A ASP 172 OD1 90 1 Y 1 q ASP 172 ? OD2 ? A ASP 172 OD2 91 1 Y 1 q VAL 173 ? CG1 ? A VAL 173 CG1 92 1 Y 1 q VAL 173 ? CG2 ? A VAL 173 CG2 93 1 Y 1 q LEU 174 ? CG ? A LEU 174 CG 94 1 Y 1 q LEU 174 ? CD1 ? A LEU 174 CD1 95 1 Y 1 q LEU 174 ? CD2 ? A LEU 174 CD2 96 1 Y 1 q ILE 176 ? CG1 ? A ILE 176 CG1 97 1 Y 1 q ILE 176 ? CG2 ? A ILE 176 CG2 98 1 Y 1 q ILE 176 ? CD1 ? A ILE 176 CD1 99 1 Y 1 q VAL 177 ? CG1 ? A VAL 177 CG1 100 1 Y 1 q VAL 177 ? CG2 ? A VAL 177 CG2 101 1 Y 1 q GLU 178 ? CG ? A GLU 178 CG 102 1 Y 1 q GLU 178 ? CD ? A GLU 178 CD 103 1 Y 1 q GLU 178 ? OE1 ? A GLU 178 OE1 104 1 Y 1 q GLU 178 ? OE2 ? A GLU 178 OE2 105 1 Y 1 q LYS 179 ? CG ? A LYS 179 CG 106 1 Y 1 q LYS 179 ? CD ? A LYS 179 CD 107 1 Y 1 q LYS 179 ? CE ? A LYS 179 CE 108 1 Y 1 q LYS 179 ? NZ ? A LYS 179 NZ 109 1 Y 1 q HIS 180 ? CG ? A HIS 180 CG 110 1 Y 1 q HIS 180 ? ND1 ? A HIS 180 ND1 111 1 Y 1 q HIS 180 ? CD2 ? A HIS 180 CD2 112 1 Y 1 q HIS 180 ? CE1 ? A HIS 180 CE1 113 1 Y 1 q HIS 180 ? NE2 ? A HIS 180 NE2 114 1 Y 1 q ASN 181 ? CG ? A ASN 181 CG 115 1 Y 1 q ASN 181 ? OD1 ? A ASN 181 OD1 116 1 Y 1 q ASN 181 ? ND2 ? A ASN 181 ND2 117 1 Y 1 q ASP 183 ? CG ? A ASP 183 CG 118 1 Y 1 q ASP 183 ? OD1 ? A ASP 183 OD1 119 1 Y 1 q ASP 183 ? OD2 ? A ASP 183 OD2 120 1 Y 1 q LYS 186 ? CG ? A LYS 186 CG 121 1 Y 1 q LYS 186 ? CD ? A LYS 186 CD 122 1 Y 1 q LYS 186 ? CE ? A LYS 186 CE 123 1 Y 1 q LYS 186 ? NZ ? A LYS 186 NZ 124 1 Y 1 q ILE 187 ? CG1 ? A ILE 187 CG1 125 1 Y 1 q ILE 187 ? CG2 ? A ILE 187 CG2 126 1 Y 1 q ILE 187 ? CD1 ? A ILE 187 CD1 127 1 Y 1 q ARG 188 ? CG ? A ARG 188 CG 128 1 Y 1 q ARG 188 ? CD ? A ARG 188 CD 129 1 Y 1 q ARG 188 ? NE ? A ARG 188 NE 130 1 Y 1 q ARG 188 ? CZ ? A ARG 188 CZ 131 1 Y 1 q ARG 188 ? NH1 ? A ARG 188 NH1 132 1 Y 1 q ARG 188 ? NH2 ? A ARG 188 NH2 133 1 Y 1 q ASN 189 ? CG ? A ASN 189 CG 134 1 Y 1 q ASN 189 ? OD1 ? A ASN 189 OD1 135 1 Y 1 q ASN 189 ? ND2 ? A ASN 189 ND2 136 1 Y 1 q GLU 190 ? CG ? A GLU 190 CG 137 1 Y 1 q GLU 190 ? CD ? A GLU 190 CD 138 1 Y 1 q GLU 190 ? OE1 ? A GLU 190 OE1 139 1 Y 1 q GLU 190 ? OE2 ? A GLU 190 OE2 140 1 Y 1 q VAL 191 ? CG1 ? A VAL 191 CG1 141 1 Y 1 q VAL 191 ? CG2 ? A VAL 191 CG2 142 1 Y 1 q THR 192 ? OG1 ? A THR 192 OG1 143 1 Y 1 q THR 192 ? CG2 ? A THR 192 CG2 144 1 Y 1 q ARG 197 ? CG ? A ARG 197 CG 145 1 Y 1 q ARG 197 ? CD ? A ARG 197 CD 146 1 Y 1 q ARG 197 ? NE ? A ARG 197 NE 147 1 Y 1 q ARG 197 ? CZ ? A ARG 197 CZ 148 1 Y 1 q ARG 197 ? NH1 ? A ARG 197 NH1 149 1 Y 1 q ARG 197 ? NH2 ? A ARG 197 NH2 150 1 Y 1 q ARG 201 ? CG ? A ARG 201 CG 151 1 Y 1 q ARG 201 ? CD ? A ARG 201 CD 152 1 Y 1 q ARG 201 ? NE ? A ARG 201 NE 153 1 Y 1 q ARG 201 ? CZ ? A ARG 201 CZ 154 1 Y 1 q ARG 201 ? NH1 ? A ARG 201 NH1 155 1 Y 1 q ARG 201 ? NH2 ? A ARG 201 NH2 156 1 Y 1 q PHE 202 ? CG ? A PHE 202 CG 157 1 Y 1 q PHE 202 ? CD1 ? A PHE 202 CD1 158 1 Y 1 q PHE 202 ? CD2 ? A PHE 202 CD2 159 1 Y 1 q PHE 202 ? CE1 ? A PHE 202 CE1 160 1 Y 1 q PHE 202 ? CE2 ? A PHE 202 CE2 161 1 Y 1 q PHE 202 ? CZ ? A PHE 202 CZ 162 1 Y 1 q THR 203 ? OG1 ? A THR 203 OG1 163 1 Y 1 q THR 203 ? CG2 ? A THR 203 CG2 164 1 Y 1 q LYS 205 ? CG ? A LYS 205 CG 165 1 Y 1 q LYS 205 ? CD ? A LYS 205 CD 166 1 Y 1 q LYS 205 ? CE ? A LYS 205 CE 167 1 Y 1 q LYS 205 ? NZ ? A LYS 205 NZ 168 1 Y 1 q ASP 206 ? CG ? A ASP 206 CG 169 1 Y 1 q ASP 206 ? OD1 ? A ASP 206 OD1 170 1 Y 1 q ASP 206 ? OD2 ? A ASP 206 OD2 171 1 Y 1 q GLU 208 ? CG ? A GLU 208 CG 172 1 Y 1 q GLU 208 ? CD ? A GLU 208 CD 173 1 Y 1 q GLU 208 ? OE1 ? A GLU 208 OE1 174 1 Y 1 q GLU 208 ? OE2 ? A GLU 208 OE2 175 1 Y 1 q PRO 209 ? CG ? A PRO 209 CG 176 1 Y 1 q PRO 209 ? CD ? A PRO 209 CD 177 1 Y 1 q ARG 210 ? CG ? A ARG 210 CG 178 1 Y 1 q ARG 210 ? CD ? A ARG 210 CD 179 1 Y 1 q ARG 210 ? NE ? A ARG 210 NE 180 1 Y 1 q ARG 210 ? CZ ? A ARG 210 CZ 181 1 Y 1 q ARG 210 ? NH1 ? A ARG 210 NH1 182 1 Y 1 q ARG 210 ? NH2 ? A ARG 210 NH2 183 1 Y 1 q GLU 212 ? CG ? A GLU 212 CG 184 1 Y 1 q GLU 212 ? CD ? A GLU 212 CD 185 1 Y 1 q GLU 212 ? OE1 ? A GLU 212 OE1 186 1 Y 1 q GLU 212 ? OE2 ? A GLU 212 OE2 187 1 Y 1 q LEU 213 ? CG ? A LEU 213 CG 188 1 Y 1 q LEU 213 ? CD1 ? A LEU 213 CD1 189 1 Y 1 q LEU 213 ? CD2 ? A LEU 213 CD2 190 1 Y 1 q SER 214 ? OG ? A SER 214 OG 191 1 Y 1 q SER 215 ? OG ? A SER 215 OG 192 1 Y 1 q HIS 217 ? CG ? A HIS 217 CG 193 1 Y 1 q HIS 217 ? ND1 ? A HIS 217 ND1 194 1 Y 1 q HIS 217 ? CD2 ? A HIS 217 CD2 195 1 Y 1 q HIS 217 ? CE1 ? A HIS 217 CE1 196 1 Y 1 q HIS 217 ? NE2 ? A HIS 217 NE2 197 1 Y 1 q VAL 218 ? CG1 ? A VAL 218 CG1 198 1 Y 1 q VAL 218 ? CG2 ? A VAL 218 CG2 199 1 Y 1 q PRO 219 ? CG ? A PRO 219 CG 200 1 Y 1 q PRO 219 ? CD ? A PRO 219 CD 201 1 Y 1 q TYR 222 ? CG ? A TYR 222 CG 202 1 Y 1 q TYR 222 ? CD1 ? A TYR 222 CD1 203 1 Y 1 q TYR 222 ? CD2 ? A TYR 222 CD2 204 1 Y 1 q TYR 222 ? CE1 ? A TYR 222 CE1 205 1 Y 1 q TYR 222 ? CE2 ? A TYR 222 CE2 206 1 Y 1 q TYR 222 ? CZ ? A TYR 222 CZ 207 1 Y 1 q TYR 222 ? OH ? A TYR 222 OH 208 1 Y 1 q SER 223 ? OG ? A SER 223 OG 209 1 Y 1 q ILE 224 ? CG1 ? A ILE 224 CG1 210 1 Y 1 q ILE 224 ? CG2 ? A ILE 224 CG2 211 1 Y 1 q ILE 224 ? CD1 ? A ILE 224 CD1 212 1 Y 1 q LYS 234 ? CG ? A LYS 234 CG 213 1 Y 1 q LYS 234 ? CD ? A LYS 234 CD 214 1 Y 1 q LYS 234 ? CE ? A LYS 234 CE 215 1 Y 1 q LYS 234 ? NZ ? A LYS 234 NZ 216 1 Y 1 q LYS 236 ? CG ? A LYS 236 CG 217 1 Y 1 q LYS 236 ? CD ? A LYS 236 CD 218 1 Y 1 q LYS 236 ? CE ? A LYS 236 CE 219 1 Y 1 q LYS 236 ? NZ ? A LYS 236 NZ 220 1 Y 1 q SER 237 ? OG ? A SER 237 OG 221 1 Y 1 q PRO 238 ? CG ? A PRO 238 CG 222 1 Y 1 q PRO 238 ? CD ? A PRO 238 CD 223 1 Y 1 q GLU 239 ? CG ? A GLU 239 CG 224 1 Y 1 q GLU 239 ? CD ? A GLU 239 CD 225 1 Y 1 q GLU 239 ? OE1 ? A GLU 239 OE1 226 1 Y 1 q GLU 239 ? OE2 ? A GLU 239 OE2 227 1 Y 1 q GLU 240 ? CG ? A GLU 240 CG 228 1 Y 1 q GLU 240 ? CD ? A GLU 240 CD 229 1 Y 1 q GLU 240 ? OE1 ? A GLU 240 OE1 230 1 Y 1 q GLU 240 ? OE2 ? A GLU 240 OE2 231 1 Y 1 q LEU 241 ? CG ? A LEU 241 CG 232 1 Y 1 q LEU 241 ? CD1 ? A LEU 241 CD1 233 1 Y 1 q LEU 241 ? CD2 ? A LEU 241 CD2 234 1 Y 1 q LYS 242 ? CG ? A LYS 242 CG 235 1 Y 1 q LYS 242 ? CD ? A LYS 242 CD 236 1 Y 1 q LYS 242 ? CE ? A LYS 242 CE 237 1 Y 1 q LYS 242 ? NZ ? A LYS 242 NZ 238 1 Y 1 q LEU 244 ? CG ? A LEU 244 CG 239 1 Y 1 q LEU 244 ? CD1 ? A LEU 244 CD1 240 1 Y 1 q LEU 244 ? CD2 ? A LEU 244 CD2 241 1 Y 1 q SER 247 ? OG ? A SER 247 OG 242 1 Y 1 q LYS 248 ? CG ? A LYS 248 CG 243 1 Y 1 q LYS 248 ? CD ? A LYS 248 CD 244 1 Y 1 q LYS 248 ? CE ? A LYS 248 CE 245 1 Y 1 q LYS 248 ? NZ ? A LYS 248 NZ 246 1 Y 1 q ILE 250 ? CG1 ? A ILE 250 CG1 247 1 Y 1 q ILE 250 ? CG2 ? A ILE 250 CG2 248 1 Y 1 q ILE 250 ? CD1 ? A ILE 250 CD1 249 1 Y 1 q ASP 251 ? CG ? A ASP 251 CG 250 1 Y 1 q ASP 251 ? OD1 ? A ASP 251 OD1 251 1 Y 1 q ASP 251 ? OD2 ? A ASP 251 OD2 252 1 Y 1 q SER 253 ? OG ? A SER 253 OG 253 1 Y 1 q LYS 254 ? CG ? A LYS 254 CG 254 1 Y 1 q LYS 254 ? CD ? A LYS 254 CD 255 1 Y 1 q LYS 254 ? CE ? A LYS 254 CE 256 1 Y 1 q LYS 254 ? NZ ? A LYS 254 NZ 257 1 Y 1 q PRO 255 ? CG ? A PRO 255 CG 258 1 Y 1 q PRO 255 ? CD ? A PRO 255 CD 259 1 Y 1 q THR 292 ? OG1 ? A THR 292 OG1 260 1 Y 1 q THR 292 ? CG2 ? A THR 292 CG2 261 1 Y 1 q GLU 293 ? CG ? A GLU 293 CG 262 1 Y 1 q GLU 293 ? CD ? A GLU 293 CD 263 1 Y 1 q GLU 293 ? OE1 ? A GLU 293 OE1 264 1 Y 1 q GLU 293 ? OE2 ? A GLU 293 OE2 265 1 Y 1 q TRP 294 ? CG ? A TRP 294 CG 266 1 Y 1 q TRP 294 ? CD1 ? A TRP 294 CD1 267 1 Y 1 q TRP 294 ? CD2 ? A TRP 294 CD2 268 1 Y 1 q TRP 294 ? NE1 ? A TRP 294 NE1 269 1 Y 1 q TRP 294 ? CE2 ? A TRP 294 CE2 270 1 Y 1 q TRP 294 ? CE3 ? A TRP 294 CE3 271 1 Y 1 q TRP 294 ? CZ2 ? A TRP 294 CZ2 272 1 Y 1 q TRP 294 ? CZ3 ? A TRP 294 CZ3 273 1 Y 1 q TRP 294 ? CH2 ? A TRP 294 CH2 274 1 Y 1 q GLN 296 ? CG ? A GLN 296 CG 275 1 Y 1 q GLN 296 ? CD ? A GLN 296 CD 276 1 Y 1 q GLN 296 ? OE1 ? A GLN 296 OE1 277 1 Y 1 q GLN 296 ? NE2 ? A GLN 296 NE2 278 1 Y 1 q ARG 297 ? CG ? A ARG 297 CG 279 1 Y 1 q ARG 297 ? CD ? A ARG 297 CD 280 1 Y 1 q ARG 297 ? NE ? A ARG 297 NE 281 1 Y 1 q ARG 297 ? CZ ? A ARG 297 CZ 282 1 Y 1 q ARG 297 ? NH1 ? A ARG 297 NH1 283 1 Y 1 q ARG 297 ? NH2 ? A ARG 297 NH2 284 1 Y 1 q PRO 299 ? CG ? A PRO 299 CG 285 1 Y 1 q PRO 299 ? CD ? A PRO 299 CD 286 1 Y 1 q THR 300 ? OG1 ? A THR 300 OG1 287 1 Y 1 q THR 300 ? CG2 ? A THR 300 CG2 288 1 Y 1 q LYS 301 ? CG ? A LYS 301 CG 289 1 Y 1 q LYS 301 ? CD ? A LYS 301 CD 290 1 Y 1 q LYS 301 ? CE ? A LYS 301 CE 291 1 Y 1 q LYS 301 ? NZ ? A LYS 301 NZ 292 1 Y 1 q TYR 302 ? CG ? A TYR 302 CG 293 1 Y 1 q TYR 302 ? CD1 ? A TYR 302 CD1 294 1 Y 1 q TYR 302 ? CD2 ? A TYR 302 CD2 295 1 Y 1 q TYR 302 ? CE1 ? A TYR 302 CE1 296 1 Y 1 q TYR 302 ? CE2 ? A TYR 302 CE2 297 1 Y 1 q TYR 302 ? CZ ? A TYR 302 CZ 298 1 Y 1 q TYR 302 ? OH ? A TYR 302 OH 299 1 Y 1 q ILE 303 ? CG1 ? A ILE 303 CG1 300 1 Y 1 q ILE 303 ? CG2 ? A ILE 303 CG2 301 1 Y 1 q ILE 303 ? CD1 ? A ILE 303 CD1 302 1 Y 1 q VAL 304 ? CG1 ? A VAL 304 CG1 303 1 Y 1 q VAL 304 ? CG2 ? A VAL 304 CG2 304 1 Y 1 q LYS 305 ? CG ? A LYS 305 CG 305 1 Y 1 q LYS 305 ? CD ? A LYS 305 CD 306 1 Y 1 q LYS 305 ? CE ? A LYS 305 CE 307 1 Y 1 q LYS 305 ? NZ ? A LYS 305 NZ 308 1 Y 1 q GLU 306 ? CG ? A GLU 306 CG 309 1 Y 1 q GLU 306 ? CD ? A GLU 306 CD 310 1 Y 1 q GLU 306 ? OE1 ? A GLU 306 OE1 311 1 Y 1 q GLU 306 ? OE2 ? A GLU 306 OE2 312 1 Y 1 q GLU 307 ? CG ? A GLU 307 CG 313 1 Y 1 q GLU 307 ? CD ? A GLU 307 CD 314 1 Y 1 q GLU 307 ? OE1 ? A GLU 307 OE1 315 1 Y 1 q GLU 307 ? OE2 ? A GLU 307 OE2 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6YJ5 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6YJ5 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 6YJ5 _struct.title 'Focused refinement cryo-EM structure of the yeast mitochondrial complex I sub-stoichiometric sulfur transferase subunit' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6YJ5 _struct_keywords.text 'NADH:Ubiquinone Oxidoreductase, sulfur transferase, sub-stoichiometric, complex I, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A1D8NPQ4_YARLL _struct_ref.pdbx_db_accession A0A1D8NPQ4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSKLISPAELAKRLSSKETKIFDATWYLPTPANVGKNAYDNYMKKRIPGALYFDIDAVNTPSKFPHMLPSPQTFENELTK LGVSSDSPIVVYDTQGVFSGPRLVWTFKVFGHDNVQFLNGFEAYTQLPGIPSRPDAYTWGIWDTQVPGKIDPADPPYKVT KARPELVKSFEDVLAIVEKHNGDGAKIRNEVTFIDARPNGRFTGKDAEPRAELSSGHVPGAYSIAFPEVVENGKFKSPEE LKALFASKGIDGSKPIISMCGSGVTACVIDLALEIAGIGSRDTNAVYDGSWTEWAQRAPTKYIVKEENLNEANRA ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6YJ5 _struct_ref_seq.pdbx_strand_id q _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 315 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A1D8NPQ4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 315 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 315 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 14870 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 6 ? SER A 15 ? SER q 6 SER q 15 1 ? 10 HELX_P HELX_P2 AA2 ALA A 38 ? MET A 43 ? ALA q 38 MET q 43 1 ? 6 HELX_P HELX_P3 AA3 ASP A 54 ? ASN A 59 ? ASP q 54 ASN q 59 1 ? 6 HELX_P HELX_P4 AA4 PHE A 74 ? THR A 79 ? PHE q 74 THR q 79 1 ? 6 HELX_P HELX_P5 AA5 GLY A 100 ? PHE A 110 ? GLY q 100 PHE q 110 1 ? 11 HELX_P HELX_P6 AA6 GLY A 120 ? GLN A 126 ? GLY q 120 GLN q 126 1 ? 7 HELX_P HELX_P7 AA7 SER A 169 ? ALA A 175 ? SER q 169 ALA q 175 1 ? 7 HELX_P HELX_P8 AA8 ILE A 176 ? LYS A 179 ? ILE q 176 LYS q 179 5 ? 4 HELX_P HELX_P9 AA9 ASN A 181 ? ALA A 185 ? ASN q 181 ALA q 185 5 ? 5 HELX_P HELX_P10 AB1 LYS A 186 ? VAL A 191 ? LYS q 186 VAL q 191 1 ? 6 HELX_P HELX_P11 AB2 SER A 237 ? SER A 247 ? SER q 237 SER q 247 1 ? 11 HELX_P HELX_P12 AB3 CYS A 260 ? VAL A 264 ? CYS q 260 VAL q 264 5 ? 5 HELX_P HELX_P13 AB4 THR A 265 ? ALA A 266 ? THR q 265 ALA q 266 5 ? 2 HELX_P HELX_P14 AB5 CYS A 267 ? GLY A 277 ? CYS q 267 GLY q 277 1 ? 11 HELX_P HELX_P15 AB6 SER A 290 ? ARG A 297 ? SER q 290 ARG q 297 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASP _struct_mon_prot_cis.label_seq_id 154 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASP _struct_mon_prot_cis.auth_seq_id 154 _struct_mon_prot_cis.auth_asym_id q _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 155 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 155 _struct_mon_prot_cis.pdbx_auth_asym_id_2 q _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -9.05 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 3 ? ILE A 5 ? LYS q 3 ILE q 5 AA1 2 VAL A 115 ? LEU A 118 ? VAL q 115 LEU q 118 AA1 3 ILE A 89 ? TYR A 92 ? ILE q 89 TYR q 92 AA1 4 LYS A 20 ? ASP A 23 ? LYS q 20 ASP q 23 AA1 5 LEU A 51 ? TYR A 52 ? LEU q 51 TYR q 52 AA2 1 THR A 192 ? PHE A 193 ? THR q 192 PHE q 193 AA2 2 ILE A 256 ? SER A 258 ? ILE q 256 SER q 258 AA2 3 ALA A 285 ? VAL A 286 ? ALA q 285 VAL q 286 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 5 ? N ILE q 5 O PHE A 117 ? O PHE q 117 AA1 2 3 O LEU A 118 ? O LEU q 118 N VAL A 91 ? N VAL q 91 AA1 3 4 O VAL A 90 ? O VAL q 90 N PHE A 22 ? N PHE q 22 AA1 4 5 N ASP A 23 ? N ASP q 23 O LEU A 51 ? O LEU q 51 AA2 1 2 N THR A 192 ? N THR q 192 O ILE A 257 ? O ILE q 257 AA2 2 3 N ILE A 256 ? N ILE q 256 O ALA A 285 ? O ALA q 285 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NZ _pdbx_validate_close_contact.auth_asym_id_1 q _pdbx_validate_close_contact.auth_comp_id_1 LYS _pdbx_validate_close_contact.auth_seq_id_1 108 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OE2 _pdbx_validate_close_contact.auth_asym_id_2 q _pdbx_validate_close_contact.auth_comp_id_2 GLU _pdbx_validate_close_contact.auth_seq_id_2 274 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO q 29 ? ? -86.76 46.76 2 1 LYS q 45 ? ? -162.31 118.52 3 1 HIS q 66 ? ? -96.51 56.39 4 1 THR q 138 ? ? 75.02 -9.70 5 1 ASN q 232 ? ? 70.53 -18.26 6 1 SER q 262 ? ? 69.01 -3.59 7 1 ASN q 284 ? ? -69.88 80.70 8 1 PRO q 299 ? ? -69.70 -178.90 # _em_3d_fitting.entry_id 6YJ5 _em_3d_fitting.id 1 _em_3d_fitting.details 'SWISS-MODEL used to generate initial model using PDB 1RHD as a template' _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.pdb_entry_id 1RHD _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 1RHD # _em_3d_reconstruction.entry_id 6YJ5 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 2 _em_3d_reconstruction.num_particles 25456 _em_3d_reconstruction.resolution 3.5 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.45 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'ST1 (sulfur transferase)' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6YJ5 _em_image_scans.id 1 _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image 25 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6YJ5 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 50 _em_imaging.calibrated_defocus_max -2700 _em_imaging.calibrated_defocus_min -1500 _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification 130000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'Gold grids saturated with PEG thiol reagent' _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type UltrAuFoil _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 6YJ5 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6YJ5 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 6YJ5 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 q MET 1 ? A MET 1 2 1 Y 1 q ASN 308 ? A ASN 308 3 1 Y 1 q LEU 309 ? A LEU 309 4 1 Y 1 q ASN 310 ? A ASN 310 5 1 Y 1 q GLU 311 ? A GLU 311 6 1 Y 1 q ALA 312 ? A ALA 312 7 1 Y 1 q ASN 313 ? A ASN 313 8 1 Y 1 q ARG 314 ? A ARG 314 9 1 Y 1 q ALA 315 ? A ALA 315 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 4952 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Yarrowia lipolytica' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 4952 _em_entity_assembly_recombinant.organism 'Yarrowia lipolytica' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 44 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 2540 # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details 'After manual curation of Relion auto-pick' _em_particle_selection.method ? _em_particle_selection.num_particles_selected 106302 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? RELION 3.1 1 ? ? 2 'IMAGE ACQUISITION' ? EPU ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? RELION 3.1 1 ? ? 5 'CTF CORRECTION' ? Gctf ? 1 ? ? 6 'LAYERLINE INDEXING' ? ? ? ? ? ? 7 'DIFFRACTION INDEXING' ? ? ? ? ? ? 8 'MODEL FITTING' ? 'UCSF Chimera' 1.13.1 ? 1 ? 9 OTHER ? ? ? ? ? ? 10 'MODEL REFINEMENT' ? PHENIX 1.14 ? 1 ? 11 'MODEL REFINEMENT' ? PHENIX 1.16 ? 1 ? 12 'INITIAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 13 'FINAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 14 CLASSIFICATION ? RELION 3.1 1 ? ? 15 RECONSTRUCTION ? RELION 3.1 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' MC_U105663141 1 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' MC_UU_00015/2 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1RHD # _atom_sites.entry_id 6YJ5 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_