HEADER HYDROLASE 14-APR-20 6YO1 TITLE CRYSTAL STRUCTURE OF RIBONUCLEASE A SOLVED BY VANADIUM SAD PHASING COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE PANCREATIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RNASE 1,RNASE A; COMPND 5 EC: 4.6.1.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: RNASE1, RNS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENDORIBONUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.EL OMARI,N.MOHAMAD,K.BOUNTRA,R.DUMAN,M.ROMANO,K.SCHLEGEL,H.KWONG, AUTHOR 2 V.MYKHAYLYK,C.E.OLESEN,J.V.MOLLER,M.BUBLITZ,K.BEIS,A.WAGNER REVDAT 3 06-NOV-24 6YO1 1 REMARK REVDAT 2 02-DEC-20 6YO1 1 JRNL REVDAT 1 04-NOV-20 6YO1 0 JRNL AUTH K.EL OMARI,N.MOHAMAD,K.BOUNTRA,R.DUMAN,M.ROMANO,K.SCHLEGEL, JRNL AUTH 2 H.S.KWONG,V.MYKHAYLYK,C.OLESEN,J.V.MOLLER,M.BUBLITZ,K.BEIS, JRNL AUTH 3 A.WAGNER JRNL TITL EXPERIMENTAL PHASING WITH VANADIUM AND APPLICATION TO JRNL TITL 2 NUCLEOTIDE-BINDING MEMBRANE PROTEINS. JRNL REF IUCRJ V. 7 1092 2020 JRNL REFN ESSN 2052-2525 JRNL PMID 33209320 JRNL DOI 10.1107/S2052252520012312 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.640 REMARK 3 FREE R VALUE TEST SET COUNT : 878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5600 - 3.4500 1.00 3097 168 0.1524 0.1590 REMARK 3 2 3.4500 - 2.7400 1.00 3022 136 0.1935 0.2516 REMARK 3 3 2.7400 - 2.3900 1.00 2992 143 0.2103 0.2643 REMARK 3 4 2.3900 - 2.1700 1.00 2999 137 0.2235 0.2485 REMARK 3 5 2.1700 - 2.0200 1.00 2973 143 0.2397 0.3067 REMARK 3 6 2.0200 - 1.9000 1.00 2950 151 0.2813 0.3251 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.237 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.267 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1968 REMARK 3 ANGLE : 1.196 2670 REMARK 3 CHIRALITY : 0.320 296 REMARK 3 PLANARITY : 0.006 343 REMARK 3 DIHEDRAL : 15.997 734 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8481 31.6560 10.4544 REMARK 3 T TENSOR REMARK 3 T11: 0.4728 T22: 0.3619 REMARK 3 T33: 0.4026 T12: -0.0163 REMARK 3 T13: 0.1232 T23: 0.0589 REMARK 3 L TENSOR REMARK 3 L11: 3.2582 L22: 2.1588 REMARK 3 L33: 4.1211 L12: -0.4418 REMARK 3 L13: -0.3952 L23: -1.0700 REMARK 3 S TENSOR REMARK 3 S11: 0.4769 S12: 0.3348 S13: 0.9708 REMARK 3 S21: 0.0306 S22: -0.1490 S23: -0.3066 REMARK 3 S31: -1.0485 S32: 0.6345 S33: -0.1980 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8535 20.1343 -0.3794 REMARK 3 T TENSOR REMARK 3 T11: 0.6277 T22: 0.7464 REMARK 3 T33: 0.4560 T12: 0.0518 REMARK 3 T13: -0.0550 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.5906 L22: 6.0782 REMARK 3 L33: 3.5796 L12: -3.0402 REMARK 3 L13: -2.3136 L23: 4.6631 REMARK 3 S TENSOR REMARK 3 S11: 0.1259 S12: 0.7342 S13: -0.5973 REMARK 3 S21: -0.7138 S22: -0.3164 S23: 0.6069 REMARK 3 S31: -0.4681 S32: -0.8356 S33: 0.0542 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0516 23.3658 2.6698 REMARK 3 T TENSOR REMARK 3 T11: 0.4302 T22: 0.4609 REMARK 3 T33: 0.3998 T12: -0.0258 REMARK 3 T13: 0.0724 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 3.3651 L22: 3.5148 REMARK 3 L33: 3.2500 L12: -0.9479 REMARK 3 L13: -0.9218 L23: 0.5012 REMARK 3 S TENSOR REMARK 3 S11: 0.1516 S12: 0.2609 S13: 0.2118 REMARK 3 S21: -0.6401 S22: -0.0197 S23: -0.8383 REMARK 3 S31: -0.2128 S32: 0.0516 S33: -0.1339 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2920 22.4610 21.9176 REMARK 3 T TENSOR REMARK 3 T11: 0.2834 T22: 0.3084 REMARK 3 T33: 0.2723 T12: 0.0118 REMARK 3 T13: 0.0055 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 3.3637 L22: 2.5684 REMARK 3 L33: 3.2086 L12: -1.0506 REMARK 3 L13: 1.3979 L23: -1.4080 REMARK 3 S TENSOR REMARK 3 S11: -0.0558 S12: 0.0053 S13: -0.0174 REMARK 3 S21: 0.0492 S22: 0.0917 S23: 0.0259 REMARK 3 S31: -0.2808 S32: -0.3379 S33: -0.0112 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3506 17.5831 20.6411 REMARK 3 T TENSOR REMARK 3 T11: 0.3552 T22: 0.3602 REMARK 3 T33: 0.3511 T12: -0.0261 REMARK 3 T13: -0.0101 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 5.6121 L22: 1.7978 REMARK 3 L33: 1.8586 L12: 0.2511 REMARK 3 L13: -0.4479 L23: -1.6171 REMARK 3 S TENSOR REMARK 3 S11: -0.4144 S12: 0.3576 S13: 0.0960 REMARK 3 S21: -0.0322 S22: 0.4303 S23: 0.2115 REMARK 3 S31: 0.1614 S32: -0.4269 S33: -0.0132 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3330 17.3333 1.3060 REMARK 3 T TENSOR REMARK 3 T11: 0.4993 T22: 0.5667 REMARK 3 T33: 0.5173 T12: -0.0241 REMARK 3 T13: 0.0861 T23: -0.0681 REMARK 3 L TENSOR REMARK 3 L11: 6.3114 L22: 1.8785 REMARK 3 L33: 2.8887 L12: -0.2238 REMARK 3 L13: -2.2089 L23: -0.3743 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: 0.3153 S13: -0.0518 REMARK 3 S21: -0.5207 S22: 0.1134 S23: -0.6297 REMARK 3 S31: 0.7008 S32: 0.2714 S33: -0.0296 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5687 20.6838 14.4280 REMARK 3 T TENSOR REMARK 3 T11: 0.3030 T22: 0.3169 REMARK 3 T33: 0.3204 T12: -0.0126 REMARK 3 T13: 0.0114 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.0653 L22: 0.7235 REMARK 3 L33: 2.1993 L12: -0.5767 REMARK 3 L13: -0.6378 L23: -0.6713 REMARK 3 S TENSOR REMARK 3 S11: -0.1241 S12: 0.2469 S13: -0.0326 REMARK 3 S21: -0.0177 S22: 0.2067 S23: -0.1236 REMARK 3 S31: 0.3785 S32: -0.2867 S33: -0.0626 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.1233 -1.6914 41.8957 REMARK 3 T TENSOR REMARK 3 T11: 0.3276 T22: 0.3504 REMARK 3 T33: 0.3953 T12: 0.0306 REMARK 3 T13: 0.0260 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 3.5875 L22: 2.6971 REMARK 3 L33: 3.3369 L12: 1.5842 REMARK 3 L13: 0.2305 L23: -0.1572 REMARK 3 S TENSOR REMARK 3 S11: -0.2466 S12: -0.1659 S13: -0.4135 REMARK 3 S21: -0.0007 S22: 0.3920 S23: 0.1666 REMARK 3 S31: 0.1800 S32: -0.0742 S33: -0.0824 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7576 6.2592 49.4650 REMARK 3 T TENSOR REMARK 3 T11: 0.3805 T22: 0.4412 REMARK 3 T33: 0.3271 T12: 0.0831 REMARK 3 T13: -0.0252 T23: -0.0625 REMARK 3 L TENSOR REMARK 3 L11: 4.0732 L22: 1.7812 REMARK 3 L33: 3.1461 L12: -0.3139 REMARK 3 L13: 0.8646 L23: -1.0216 REMARK 3 S TENSOR REMARK 3 S11: -0.3690 S12: -0.6880 S13: 0.1154 REMARK 3 S21: 0.7972 S22: 0.2654 S23: -0.0817 REMARK 3 S31: -0.4852 S32: -0.2407 S33: 0.0953 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 51 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.5228 4.7851 28.7138 REMARK 3 T TENSOR REMARK 3 T11: 0.2524 T22: 0.2731 REMARK 3 T33: 0.3318 T12: -0.0249 REMARK 3 T13: 0.0005 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 3.4530 L22: 2.6934 REMARK 3 L33: 2.9000 L12: -0.8954 REMARK 3 L13: -1.6578 L23: 0.7066 REMARK 3 S TENSOR REMARK 3 S11: -0.1106 S12: 0.3694 S13: -0.1211 REMARK 3 S21: -0.1509 S22: -0.0327 S23: -0.1043 REMARK 3 S31: -0.0066 S32: -0.0517 S33: 0.1541 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.5669 6.1159 40.0938 REMARK 3 T TENSOR REMARK 3 T11: 0.3032 T22: 0.2951 REMARK 3 T33: 0.3618 T12: 0.0019 REMARK 3 T13: -0.0416 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.9328 L22: 1.6393 REMARK 3 L33: 2.2978 L12: -0.1818 REMARK 3 L13: 0.9355 L23: -0.0694 REMARK 3 S TENSOR REMARK 3 S11: -0.0697 S12: -0.1559 S13: -0.0442 REMARK 3 S21: 0.3002 S22: 0.0185 S23: -0.3046 REMARK 3 S31: -0.0848 S32: 0.1633 S33: 0.0538 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 2 THROUGH 17 OR REMARK 3 RESID 22 THROUGH 36 OR RESID 38 THROUGH REMARK 3 97 OR RESID 99 THROUGH 124 OR RESID 201)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 2 THROUGH 17 OR REMARK 3 RESID 22 THROUGH 36 OR RESID 38 THROUGH REMARK 3 97 OR RESID 99 THROUGH 124 OR RESID 201)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YO1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107981. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 60 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I23 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 2.26 REMARK 200 MONOCHROMATOR : SILICON CRYSTALS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 12M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18916 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 41.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 23.60 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 18.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM SODIUM CITRATE PH 5.5, 28 % PEG REMARK 280 4000 WITH 20 MM URIDINE/ORTHO-VANADATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.25500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.25500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 337 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 303 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 18 REMARK 465 ALA A 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 60 -132.30 -106.61 REMARK 500 SER B 21 -72.61 -74.07 REMARK 500 GLN B 60 -133.49 -107.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UVC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UVC B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RUV RELATED DB: PDB DBREF 6YO1 A 1 124 UNP P61823 RNAS1_BOVIN 27 150 DBREF 6YO1 B 1 124 UNP P61823 RNAS1_BOVIN 27 150 SEQRES 1 A 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 A 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 A 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 A 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 A 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 A 124 LYS ASN GLY GLN THR ASN CYS TYR GLN SER TYR SER THR SEQRES 7 A 124 MET SER ILE THR ASP CYS ARG GLU THR GLY SER SER LYS SEQRES 8 A 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 A 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 A 124 VAL HIS PHE ASP ALA SER VAL SEQRES 1 B 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 B 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 B 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 B 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 B 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 B 124 LYS ASN GLY GLN THR ASN CYS TYR GLN SER TYR SER THR SEQRES 7 B 124 MET SER ILE THR ASP CYS ARG GLU THR GLY SER SER LYS SEQRES 8 B 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 B 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 B 124 VAL HIS PHE ASP ALA SER VAL HET UVC A 201 21 HET UVC B 201 21 HETNAM UVC URIDINE-2',3'-VANADATE FORMUL 3 UVC 2(C9 H12 N2 O9 V) FORMUL 5 HOH *85(H2 O) HELIX 1 AA1 THR A 3 MET A 13 1 11 HELIX 2 AA2 ASN A 24 ARG A 33 1 10 HELIX 3 AA3 SER A 50 ALA A 56 1 7 HELIX 4 AA4 VAL A 57 GLN A 60 5 4 HELIX 5 AA5 THR B 3 MET B 13 1 11 HELIX 6 AA6 ASN B 24 ARG B 33 1 10 HELIX 7 AA7 SER B 50 ALA B 56 1 7 HELIX 8 AA8 VAL B 57 GLN B 60 5 4 SHEET 1 AA1 5 VAL A 43 VAL A 47 0 SHEET 2 AA1 5 MET A 79 GLU A 86 -1 O CYS A 84 N ASN A 44 SHEET 3 AA1 5 TYR A 97 GLU A 111 -1 O THR A 100 N ASP A 83 SHEET 4 AA1 5 CYS A 72 GLN A 74 -1 N TYR A 73 O VAL A 108 SHEET 5 AA1 5 LYS A 61 VAL A 63 -1 N LYS A 61 O GLN A 74 SHEET 1 AA2 4 VAL A 43 VAL A 47 0 SHEET 2 AA2 4 MET A 79 GLU A 86 -1 O CYS A 84 N ASN A 44 SHEET 3 AA2 4 TYR A 97 GLU A 111 -1 O THR A 100 N ASP A 83 SHEET 4 AA2 4 VAL A 116 VAL A 124 -1 O VAL A 118 N ALA A 109 SHEET 1 AA3 5 VAL B 43 VAL B 47 0 SHEET 2 AA3 5 MET B 79 GLU B 86 -1 O CYS B 84 N ASN B 44 SHEET 3 AA3 5 TYR B 97 GLU B 111 -1 O THR B 100 N ASP B 83 SHEET 4 AA3 5 CYS B 72 GLN B 74 -1 N TYR B 73 O VAL B 108 SHEET 5 AA3 5 LYS B 61 VAL B 63 -1 N VAL B 63 O CYS B 72 SHEET 1 AA4 4 VAL B 43 VAL B 47 0 SHEET 2 AA4 4 MET B 79 GLU B 86 -1 O CYS B 84 N ASN B 44 SHEET 3 AA4 4 TYR B 97 GLU B 111 -1 O THR B 100 N ASP B 83 SHEET 4 AA4 4 VAL B 116 VAL B 124 -1 O VAL B 118 N ALA B 109 SSBOND 1 CYS A 26 CYS A 84 1555 1555 2.03 SSBOND 2 CYS A 40 CYS A 95 1555 1555 2.04 SSBOND 3 CYS A 58 CYS A 110 1555 1555 2.02 SSBOND 4 CYS A 65 CYS A 72 1555 1555 2.03 SSBOND 5 CYS B 26 CYS B 84 1555 1555 2.05 SSBOND 6 CYS B 40 CYS B 95 1555 1555 2.04 SSBOND 7 CYS B 58 CYS B 110 1555 1555 2.03 SSBOND 8 CYS B 65 CYS B 72 1555 1555 2.02 CISPEP 1 TYR A 92 PRO A 93 0 3.31 CISPEP 2 ASN A 113 PRO A 114 0 6.80 CISPEP 3 TYR B 92 PRO B 93 0 4.72 CISPEP 4 ASN B 113 PRO B 114 0 6.95 SITE 1 AC1 11 GLN A 11 HIS A 12 LYS A 41 VAL A 43 SITE 2 AC1 11 ASN A 44 THR A 45 HIS A 119 PHE A 120 SITE 3 AC1 11 HOH A 301 HOH A 303 HOH A 328 SITE 1 AC2 11 GLN B 11 HIS B 12 LYS B 41 VAL B 43 SITE 2 AC2 11 ASN B 44 THR B 45 LYS B 66 HIS B 119 SITE 3 AC2 11 PHE B 120 HOH B 315 HOH B 323 CRYST1 100.510 32.660 72.400 90.00 90.83 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009949 0.000000 0.000143 0.00000 SCALE2 0.000000 0.030618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013814 0.00000