HEADER SIGNALING PROTEIN 14-APR-20 6YOP TITLE STRUCTURE OF SAMM50 LIR BOUND TO GABARAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTING AND ASSEMBLY MACHINERY COMPONENT 50 HOMOLOG,GAMMA- COMPND 3 AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: TRANSFORMATION-RELATED GENE 3 PROTEIN,TRG-3,GABA(A) COMPND 6 RECEPTOR-ASSOCIATED PROTEIN,MM46; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SAMM50, SAM50, CGI-51, TRG3, GABARAP, FLC3B, HT004; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIR, SAMM50, ATG8, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MOUILLERON,Z.WENXIN,T.JOHANSEN,S.TOOZE,Y.P.ABUDU,T.LAMARK REVDAT 2 24-JAN-24 6YOP 1 REMARK REVDAT 1 28-APR-21 6YOP 0 JRNL AUTH S.MOUILLERON,Z.WENXIN,T.JOHANSEN,S.TOOZE,Y.P.ABUDU,T.LAMARK JRNL TITL STRUCTURE OF SAMM50 LIR BOUND TO GABARAP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 69849 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 3458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.6600 - 3.2200 0.99 2785 122 0.1620 0.1826 REMARK 3 2 3.2100 - 2.5500 1.00 2706 141 0.1495 0.1635 REMARK 3 3 2.5500 - 2.2300 1.00 2678 135 0.1227 0.1369 REMARK 3 4 2.2300 - 2.0300 1.00 2666 140 0.1063 0.1218 REMARK 3 5 2.0300 - 1.8800 1.00 2678 146 0.1046 0.1235 REMARK 3 6 1.8800 - 1.7700 1.00 2660 136 0.1095 0.1374 REMARK 3 7 1.7700 - 1.6800 1.00 2645 166 0.1122 0.1477 REMARK 3 8 1.6800 - 1.6100 1.00 2631 146 0.1094 0.1430 REMARK 3 9 1.6100 - 1.5500 1.00 2661 142 0.1101 0.1402 REMARK 3 10 1.5500 - 1.4900 1.00 2611 156 0.1118 0.1456 REMARK 3 11 1.4900 - 1.4500 1.00 2679 115 0.1187 0.1526 REMARK 3 12 1.4500 - 1.4100 1.00 2685 107 0.1194 0.1576 REMARK 3 13 1.4000 - 1.3700 1.00 2692 129 0.1329 0.1761 REMARK 3 14 1.3700 - 1.3300 1.00 2592 152 0.1371 0.1486 REMARK 3 15 1.3300 - 1.3000 1.00 2665 124 0.1447 0.1884 REMARK 3 16 1.3000 - 1.2800 1.00 2646 136 0.1508 0.1738 REMARK 3 17 1.2800 - 1.2500 1.00 2648 118 0.1634 0.1642 REMARK 3 18 1.2500 - 1.2300 1.00 2644 144 0.1675 0.2052 REMARK 3 19 1.2300 - 1.2100 1.00 2588 182 0.1709 0.2063 REMARK 3 20 1.2100 - 1.1900 1.00 2667 125 0.1817 0.2155 REMARK 3 21 1.1800 - 1.1700 1.00 2600 150 0.1936 0.2107 REMARK 3 22 1.1700 - 1.1500 1.00 2650 158 0.2054 0.2330 REMARK 3 23 1.1500 - 1.1300 1.00 2649 123 0.2171 0.2420 REMARK 3 24 1.1300 - 1.1200 1.00 2625 121 0.2407 0.2442 REMARK 3 25 1.1100 - 1.1000 1.00 2640 144 0.2569 0.2700 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.105 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.382 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.023 1258 REMARK 3 ANGLE : 1.683 1725 REMARK 3 CHIRALITY : 0.430 181 REMARK 3 PLANARITY : 0.013 230 REMARK 3 DIHEDRAL : 29.245 514 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YOP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5665274 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 81.10 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 81.80 REMARK 200 R MERGE FOR SHELL (I) : 2.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GNU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% V/V ISOPROPANOL, 0.1 M NA ACETATE REMARK 280 PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 50.66150 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 50.66150 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 50.66150 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 50.66150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 50.66150 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 50.66150 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 50.66150 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 50.66150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 50.66150 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 50.66150 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 50.66150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 50.66150 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 50.66150 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 50.66150 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 50.66150 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 50.66150 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 50.66150 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 50.66150 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 50.66150 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 50.66150 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 50.66150 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 50.66150 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 50.66150 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 50.66150 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 50.66150 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 50.66150 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 50.66150 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 50.66150 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 50.66150 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 50.66150 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 50.66150 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 50.66150 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 50.66150 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 50.66150 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 50.66150 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 50.66150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 210 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A -17 REMARK 465 GLU A -16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -14 CG CD OE1 OE2 REMARK 470 GLU A -9 CG CD OE1 OE2 REMARK 470 LYS A -5 CE NZ REMARK 470 LYS A 2 CE NZ REMARK 470 LYS A 13 CE NZ REMARK 470 LYS A 46 NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 112 CA CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A -7 CB GLU A -7 CG -0.118 REMARK 500 GLU A 17 CD GLU A 17 OE1 -0.083 REMARK 500 GLU A 17 CD GLU A 17 OE2 -0.078 REMARK 500 ARG A 65 CZ ARG A 65 NH2 -0.088 REMARK 500 GLU A 73 CD GLU A 73 OE1 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 28 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP A 45 CB - CG - OD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 LEU A 94 CB - CG - CD1 ANGL. DEV. = 15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 38 -1.14 70.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 367 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 368 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 369 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A 370 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 371 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A 372 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 373 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A 374 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A 375 DISTANCE = 7.67 ANGSTROMS REMARK 525 HOH A 376 DISTANCE = 7.76 ANGSTROMS REMARK 525 HOH A 377 DISTANCE = 9.33 ANGSTROMS DBREF 6YOP A -17 -2 UNP Q9Y512 SAM50_HUMAN 24 39 DBREF 6YOP A 1 117 UNP O95166 GBRAP_HUMAN 1 117 SEQADV 6YOP GLY A -1 UNP Q9Y512 LINKER SEQADV 6YOP SER A 0 UNP Q9Y512 LINKER SEQRES 1 A 135 GLU GLU ALA GLU PHE VAL GLU VAL GLU PRO GLU ALA LYS SEQRES 2 A 135 GLN GLU ILE GLY SER MET LYS PHE VAL TYR LYS GLU GLU SEQRES 3 A 135 HIS PRO PHE GLU LYS ARG ARG SER GLU GLY GLU LYS ILE SEQRES 4 A 135 ARG LYS LYS TYR PRO ASP ARG VAL PRO VAL ILE VAL GLU SEQRES 5 A 135 LYS ALA PRO LYS ALA ARG ILE GLY ASP LEU ASP LYS LYS SEQRES 6 A 135 LYS TYR LEU VAL PRO SER ASP LEU THR VAL GLY GLN PHE SEQRES 7 A 135 TYR PHE LEU ILE ARG LYS ARG ILE HIS LEU ARG ALA GLU SEQRES 8 A 135 ASP ALA LEU PHE PHE PHE VAL ASN ASN VAL ILE PRO PRO SEQRES 9 A 135 THR SER ALA THR MET GLY GLN LEU TYR GLN GLU HIS HIS SEQRES 10 A 135 GLU GLU ASP PHE PHE LEU TYR ILE ALA TYR SER ASP GLU SEQRES 11 A 135 SER VAL TYR GLY LEU FORMUL 2 HOH *177(H2 O) HELIX 1 AA1 PHE A 3 HIS A 9 1 7 HELIX 2 AA2 PRO A 10 TYR A 25 1 16 HELIX 3 AA3 THR A 56 ILE A 68 1 13 HELIX 4 AA4 THR A 90 HIS A 99 1 10 SHEET 1 AA1 4 LYS A 48 PRO A 52 0 SHEET 2 AA1 4 ARG A 28 LYS A 35 -1 N VAL A 31 O TYR A 49 SHEET 3 AA1 4 LEU A 105 SER A 110 1 O ILE A 107 N ILE A 32 SHEET 4 AA1 4 PHE A 77 PHE A 79 -1 N PHE A 77 O SER A 110 CRYST1 101.323 101.323 101.323 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009869 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009869 0.00000