HEADER ELECTRON TRANSPORT 16-APR-20 6YPQ TITLE CRYSTAL STRUCTURE OF NATIVE PHYCOCYANIN FROM T. ELONGATUS IN TITLE 2 SPACEGROUP R32 AT 1.29 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-PHYCOCYANIN ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: C-PHYCOCYANIN BETA CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: MODIFIED RESIDUE 72: N4-METHYLASPARAGINE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: BP-1; SOURCE 5 GENE: CPCA, TLR1958; SOURCE 6 EXPRESSION_SYSTEM: THERMOSYNECHOCOCCUS ELONGATUS BP-1; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 197221; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 10 ORGANISM_TAXID: 197221; SOURCE 11 STRAIN: BP-1; SOURCE 12 GENE: CPCB, TLR1957; SOURCE 13 EXPRESSION_SYSTEM: THERMOSYNECHOCOCCUS ELONGATUS BP-1; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 197221 KEYWDS NATIVE C-PHYCOCYANIN, ANTENNA PROTEIN, LIGHT HARVESTING, ELECTRON KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.G.FEILER,S.FALKE,I.SARROU REVDAT 3 24-JAN-24 6YPQ 1 REMARK REVDAT 2 17-FEB-21 6YPQ 1 JRNL REVDAT 1 20-JAN-21 6YPQ 0 JRNL AUTH I.SARROU,C.G.FEILER,S.FALKE,N.PEARD,O.YEFANOV,H.CHAPMAN JRNL TITL C-PHYCOCYANIN AS A HIGHLY ATTRACTIVE MODEL SYSTEM IN PROTEIN JRNL TITL 2 CRYSTALLOGRAPHY: UNIQUE CRYSTALLIZATION PROPERTIES AND JRNL TITL 3 PACKING-DIVERSITY SCREENING. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 77 224 2021 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 33559611 JRNL DOI 10.1107/S2059798320016071 REMARK 2 REMARK 2 RESOLUTION. 1.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 99198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7900 - 2.9500 1.00 8371 146 0.1503 0.1715 REMARK 3 2 2.9500 - 2.3400 1.00 8244 143 0.1464 0.1510 REMARK 3 3 2.3400 - 2.0500 1.00 8217 142 0.1417 0.1581 REMARK 3 4 2.0500 - 1.8600 1.00 8188 142 0.1483 0.1714 REMARK 3 5 1.8600 - 1.7300 1.00 8203 142 0.1483 0.1586 REMARK 3 6 1.7300 - 1.6300 1.00 8186 142 0.1465 0.1801 REMARK 3 7 1.6300 - 1.5400 1.00 8157 141 0.1490 0.1560 REMARK 3 8 1.5400 - 1.4800 1.00 8156 142 0.1548 0.1999 REMARK 3 9 1.4800 - 1.4200 1.00 8170 142 0.1712 0.1918 REMARK 3 10 1.4200 - 1.3700 1.00 8155 141 0.1889 0.2107 REMARK 3 11 1.3700 - 1.3300 0.99 8092 141 0.2055 0.2356 REMARK 3 12 1.3300 - 1.2900 0.90 7368 127 0.2447 0.2766 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.125 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.862 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2795 REMARK 3 ANGLE : 1.203 3808 REMARK 3 CHIRALITY : 0.058 414 REMARK 3 PLANARITY : 0.006 498 REMARK 3 DIHEDRAL : 16.437 1045 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8123 -23.6488 -5.2933 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.1901 REMARK 3 T33: 0.3653 T12: 0.0154 REMARK 3 T13: -0.0110 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 3.9695 L22: 2.1437 REMARK 3 L33: 1.9316 L12: -1.8558 REMARK 3 L13: 0.0150 L23: -0.5116 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: -0.0414 S13: 0.5521 REMARK 3 S21: 0.0756 S22: -0.1250 S23: -0.0149 REMARK 3 S31: -0.0833 S32: -0.0340 S33: 0.1131 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.4920 -25.6152 -6.7959 REMARK 3 T TENSOR REMARK 3 T11: 0.1116 T22: 0.1333 REMARK 3 T33: 0.3062 T12: 0.0082 REMARK 3 T13: -0.0035 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.8949 L22: 0.3805 REMARK 3 L33: 0.1373 L12: -0.8493 REMARK 3 L13: 0.5307 L23: -0.2516 REMARK 3 S TENSOR REMARK 3 S11: 0.0532 S12: 0.0181 S13: -0.2665 REMARK 3 S21: -0.0395 S22: -0.0046 S23: 0.0825 REMARK 3 S31: 0.0521 S32: 0.0813 S33: -0.0450 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.0278 -0.1304 -7.6103 REMARK 3 T TENSOR REMARK 3 T11: 0.1165 T22: 0.1059 REMARK 3 T33: 0.3026 T12: 0.0171 REMARK 3 T13: -0.0216 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.5919 L22: 1.4770 REMARK 3 L33: 7.5074 L12: 0.5652 REMARK 3 L13: -2.0524 L23: -1.3895 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: -0.1026 S13: 0.2637 REMARK 3 S21: -0.0367 S22: -0.0107 S23: 0.2494 REMARK 3 S31: -0.2132 S32: -0.1302 S33: -0.0108 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.0440 -14.1000 -6.0766 REMARK 3 T TENSOR REMARK 3 T11: 0.0825 T22: 0.1032 REMARK 3 T33: 0.2181 T12: -0.0041 REMARK 3 T13: -0.0047 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 1.0215 L22: 1.2071 REMARK 3 L33: 0.4697 L12: -0.4209 REMARK 3 L13: 0.1148 L23: -0.1283 REMARK 3 S TENSOR REMARK 3 S11: 0.0078 S12: -0.0016 S13: -0.0779 REMARK 3 S21: -0.0064 S22: 0.0115 S23: -0.0208 REMARK 3 S31: -0.0103 S32: 0.0620 S33: -0.0168 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 601 THROUGH 701 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0577 -17.6389 2.2538 REMARK 3 T TENSOR REMARK 3 T11: 0.3018 T22: 0.7556 REMARK 3 T33: 0.6277 T12: 0.0352 REMARK 3 T13: -0.0060 T23: -0.3873 REMARK 3 L TENSOR REMARK 3 L11: 6.0285 L22: 0.8616 REMARK 3 L33: 6.5234 L12: 0.4453 REMARK 3 L13: -3.4412 L23: -2.1983 REMARK 3 S TENSOR REMARK 3 S11: 1.0091 S12: 0.7602 S13: 0.5649 REMARK 3 S21: -0.9410 S22: -0.4547 S23: -1.1761 REMARK 3 S31: 0.1124 S32: 0.0566 S33: -0.5868 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3303 -21.6641 -18.5737 REMARK 3 T TENSOR REMARK 3 T11: 0.1263 T22: 0.2000 REMARK 3 T33: 0.2628 T12: 0.0368 REMARK 3 T13: -0.0026 T23: -0.0391 REMARK 3 L TENSOR REMARK 3 L11: 3.2759 L22: 1.7268 REMARK 3 L33: 1.1052 L12: -1.2421 REMARK 3 L13: 1.3978 L23: -1.1281 REMARK 3 S TENSOR REMARK 3 S11: 0.1034 S12: 0.3730 S13: 0.0177 REMARK 3 S21: -0.1793 S22: -0.1882 S23: -0.2692 REMARK 3 S31: 0.1087 S32: 0.3518 S33: 0.0556 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6164 -34.3609 -17.0307 REMARK 3 T TENSOR REMARK 3 T11: 0.2093 T22: 0.2381 REMARK 3 T33: 0.4267 T12: 0.0745 REMARK 3 T13: -0.0460 T23: -0.1320 REMARK 3 L TENSOR REMARK 3 L11: 4.6617 L22: 5.9385 REMARK 3 L33: 2.9788 L12: -5.2383 REMARK 3 L13: 2.4387 L23: -2.4448 REMARK 3 S TENSOR REMARK 3 S11: 0.4911 S12: 0.3175 S13: -0.3963 REMARK 3 S21: -0.5395 S22: -0.2213 S23: -0.0871 REMARK 3 S31: 0.0545 S32: 0.2038 S33: -0.1709 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5289 -32.5309 -16.5177 REMARK 3 T TENSOR REMARK 3 T11: 0.0979 T22: 0.1817 REMARK 3 T33: 0.1813 T12: 0.0232 REMARK 3 T13: -0.0163 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.6038 L22: 1.0578 REMARK 3 L33: 0.4142 L12: 0.1645 REMARK 3 L13: -0.3485 L23: -0.0739 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: 0.2794 S13: -0.1042 REMARK 3 S21: -0.0656 S22: -0.0397 S23: 0.0027 REMARK 3 S31: -0.0211 S32: 0.0010 S33: 0.0578 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6185 -25.1540 -13.5800 REMARK 3 T TENSOR REMARK 3 T11: 0.1272 T22: 0.1923 REMARK 3 T33: 0.2469 T12: 0.0346 REMARK 3 T13: 0.0124 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 9.1263 L22: 0.5027 REMARK 3 L33: 0.0939 L12: 1.0006 REMARK 3 L13: -0.2826 L23: 0.1682 REMARK 3 S TENSOR REMARK 3 S11: 0.0965 S12: 0.3052 S13: 0.3826 REMARK 3 S21: 0.0029 S22: -0.0417 S23: 0.0767 REMARK 3 S31: -0.0736 S32: -0.0521 S33: -0.0581 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4335 -24.2606 -21.6070 REMARK 3 T TENSOR REMARK 3 T11: 0.1608 T22: 0.3514 REMARK 3 T33: 0.2654 T12: 0.0588 REMARK 3 T13: 0.0086 T23: 0.0734 REMARK 3 L TENSOR REMARK 3 L11: 3.0757 L22: 0.6663 REMARK 3 L33: 0.6695 L12: 0.3815 REMARK 3 L13: -0.4536 L23: -0.2492 REMARK 3 S TENSOR REMARK 3 S11: 0.1293 S12: 0.6740 S13: 0.4082 REMARK 3 S21: -0.1067 S22: -0.0400 S23: 0.1552 REMARK 3 S31: -0.1232 S32: -0.0453 S33: -0.0813 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3136 -37.6453 -20.0010 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.3141 REMARK 3 T33: 0.2805 T12: 0.0718 REMARK 3 T13: -0.0391 T23: -0.0906 REMARK 3 L TENSOR REMARK 3 L11: 1.5544 L22: 5.2766 REMARK 3 L33: 2.1609 L12: -0.1169 REMARK 3 L13: 0.2287 L23: -2.0680 REMARK 3 S TENSOR REMARK 3 S11: 0.0680 S12: 0.5896 S13: -0.3279 REMARK 3 S21: -0.3485 S22: -0.1690 S23: 0.0314 REMARK 3 S31: 0.1738 S32: 0.0904 S33: 0.1256 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 601 THROUGH 601 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.1028 -23.2426 -22.1784 REMARK 3 T TENSOR REMARK 3 T11: 0.6015 T22: 0.5060 REMARK 3 T33: 0.3889 T12: -0.0952 REMARK 3 T13: -0.1544 T23: -0.1559 REMARK 3 L TENSOR REMARK 3 L11: 8.6281 L22: 6.1356 REMARK 3 L33: 6.9101 L12: -5.5055 REMARK 3 L13: 3.3524 L23: -1.4260 REMARK 3 S TENSOR REMARK 3 S11: -0.2725 S12: 0.9905 S13: -0.3154 REMARK 3 S21: -1.3756 S22: -0.1186 S23: -0.2382 REMARK 3 S31: -0.8312 S32: 1.6761 S33: 0.4369 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YPQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292108055. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99233 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.290 REMARK 200 RESOLUTION RANGE LOW (A) : 48.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1JBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS: 0,1M AMINO ACIDS, 0,1M REMARK 280 BUFFER SYSTEM 1, 30%V/V P500MME_P20K, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 93.58450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.03104 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 19.97567 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 93.58450 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 54.03104 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 19.97567 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 93.58450 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 54.03104 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 19.97567 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 93.58450 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 54.03104 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 19.97567 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 93.58450 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 54.03104 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 19.97567 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 93.58450 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 54.03104 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 19.97567 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 108.06207 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 39.95133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 108.06207 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 39.95133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 108.06207 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 39.95133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 108.06207 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 39.95133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 108.06207 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 39.95133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 108.06207 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 39.95133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 61840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 66930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -514.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 603 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 647 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 784 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 392 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 463 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 20 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG B 116 O ALA B 174 1.47 REMARK 500 O HOH A 609 O HOH A 773 1.88 REMARK 500 O HOH A 626 O HOH A 788 1.91 REMARK 500 O HOH A 664 O HOH A 788 1.91 REMARK 500 O HOH A 760 O HOH A 795 1.92 REMARK 500 O HOH B 424 O HOH B 444 1.97 REMARK 500 NH2 ARG B 116 O ALA B 174 2.00 REMARK 500 O HOH A 735 O HOH A 761 2.02 REMARK 500 OG SER A 125 O HOH A 601 2.05 REMARK 500 O HOH B 448 O HOH B 472 2.10 REMARK 500 O HOH B 400 O HOH B 453 2.14 REMARK 500 OE2 GLU A 39 O HOH A 602 2.15 REMARK 500 O HOH A 757 O HOH A 800 2.17 REMARK 500 O HOH A 604 O HOH A 787 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 667 O HOH A 727 5555 1.83 REMARK 500 O HOH A 610 O HOH A 699 5555 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 75 41.99 -96.80 REMARK 500 LEU A 111 -46.90 -130.07 REMARK 500 THR B 77 148.81 79.46 REMARK 500 CYS B 111 -53.99 -131.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYC A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LYS A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYC B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYC B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LYS B 203 DBREF 6YPQ A 1 174 UNP P50032 PHCA_THEEB 1 162 DBREF 6YPQ B 1 174 UNP P50033 PHCB_THEEB 1 172 SEQRES 1 A 162 MET LYS THR PRO ILE THR GLU ALA ILE ALA ALA ALA ASP SEQRES 2 A 162 THR GLN GLY ARG PHE LEU SER ASN THR GLU LEU GLN ALA SEQRES 3 A 162 VAL ASP GLY ARG PHE LYS ARG ALA VAL ALA SER MET GLU SEQRES 4 A 162 ALA ALA ARG ALA LEU THR ASN ASN ALA GLN SER LEU ILE SEQRES 5 A 162 ASP GLY ALA ALA GLN ALA VAL TYR GLN LYS PHE PRO TYR SEQRES 6 A 162 THR THR THR MET GLN GLY SER GLN TYR ALA SER THR PRO SEQRES 7 A 162 GLU GLY LYS ALA LYS CYS ALA ARG ASP ILE GLY TYR TYR SEQRES 8 A 162 LEU ARG MET VAL THR TYR CYS LEU VAL ALA GLY GLY THR SEQRES 9 A 162 GLY PRO MET ASP GLU TYR LEU ILE ALA GLY LEU SER GLU SEQRES 10 A 162 ILE ASN SER THR PHE ASP LEU SER PRO SER TRP TYR ILE SEQRES 11 A 162 GLU ALA LEU LYS TYR ILE LYS ALA ASN HIS GLY LEU THR SEQRES 12 A 162 GLY GLN ALA ALA VAL GLU ALA ASN ALA TYR ILE ASP TYR SEQRES 13 A 162 ALA ILE ASN ALA LEU SER SEQRES 1 B 172 MET LEU ASP ALA PHE ALA LYS VAL VAL ALA GLN ALA ASP SEQRES 2 B 172 ALA ARG GLY GLU PHE LEU THR ASN ALA GLN PHE ASP ALA SEQRES 3 B 172 LEU SER ASN LEU VAL LYS GLU GLY ASN LYS ARG LEU ASP SEQRES 4 B 172 ALA VAL ASN ARG ILE THR SER ASN ALA SER THR ILE VAL SEQRES 5 B 172 ALA ASN ALA ALA ARG ALA LEU PHE ALA GLU GLN PRO GLN SEQRES 6 B 172 LEU ILE GLN PRO GLY GLY MEN ALA TYR THR ASN ARG ARG SEQRES 7 B 172 MET ALA ALA CYS LEU ARG ASP MET GLU ILE ILE LEU ARG SEQRES 8 B 172 TYR VAL THR TYR ALA ILE LEU ALA GLY ASP SER SER VAL SEQRES 9 B 172 LEU ASP ASP ARG CYS LEU ASN GLY LEU ARG GLU THR TYR SEQRES 10 B 172 GLN ALA LEU GLY THR PRO GLY SER SER VAL ALA VAL ALA SEQRES 11 B 172 ILE GLN LYS MET LYS ASP ALA ALA ILE ALA ILE ALA ASN SEQRES 12 B 172 ASP PRO ASN GLY ILE THR PRO GLY ASP CYS SER ALA LEU SEQRES 13 B 172 MET SER GLU ILE ALA GLY TYR PHE ASP ARG ALA ALA ALA SEQRES 14 B 172 ALA VAL ALA MODRES 6YPQ MEN B 72 ASN MODIFIED RESIDUE HET MEN B 72 16 HET CYC A 501 80 HET GLY A 502 10 HET LYS A 503 25 HET CYC B 201 80 HET CYC B 202 80 HET LYS B 203 25 HETNAM MEN N-METHYL ASPARAGINE HETNAM CYC PHYCOCYANOBILIN HETNAM GLY GLYCINE HETNAM LYS LYSINE FORMUL 2 MEN C5 H10 N2 O3 FORMUL 3 CYC 3(C33 H40 N4 O6) FORMUL 4 GLY C2 H5 N O2 FORMUL 5 LYS 2(C6 H15 N2 O2 1+) FORMUL 9 HOH *416(H2 O) HELIX 1 AA1 THR A 3 GLN A 15 1 13 HELIX 2 AA2 SER A 20 ASN A 47 1 28 HELIX 3 AA3 ASN A 47 PHE A 63 1 17 HELIX 4 AA4 PRO A 64 THR A 68 5 5 HELIX 5 AA5 THR A 77 GLY A 102 1 26 HELIX 6 AA6 THR A 104 LEU A 111 1 8 HELIX 7 AA7 GLY A 114 ASP A 123 1 10 HELIX 8 AA8 SER A 125 HIS A 140 1 16 HELIX 9 AA9 THR A 145 LEU A 173 1 19 HELIX 10 AB1 ASP B 3 ARG B 15 1 13 HELIX 11 AB2 THR B 20 GLU B 33 1 14 HELIX 12 AB3 GLU B 33 ASN B 47 1 15 HELIX 13 AB4 ASN B 47 GLN B 63 1 17 HELIX 14 AB5 PRO B 64 ILE B 67 5 4 HELIX 15 AB6 THR B 77 GLY B 102 1 26 HELIX 16 AB7 SER B 104 CYS B 111 1 8 HELIX 17 AB8 GLY B 114 GLY B 123 1 10 HELIX 18 AB9 PRO B 125 ASN B 145 1 21 HELIX 19 AC1 CYS B 155 ALA B 174 1 20 LINK SG CYS A 84 CAC CYC A 501 1555 1555 1.77 LINK C GLY B 71 N MEN B 72 1555 1555 1.32 LINK C MEN B 72 N ALA B 75 1555 1555 1.34 LINK SG CYS B 84 CAC CYC B 201 1555 1555 1.77 LINK SG CYS B 155 CAC CYC B 202 1555 1555 1.77 SITE 1 AC1 26 VAL A 59 THR A 66 SER A 72 GLN A 73 SITE 2 AC1 26 TYR A 74 ALA A 75 GLY A 80 LYS A 83 SITE 3 AC1 26 CYS A 84 ARG A 86 ASP A 87 TYR A 110 SITE 4 AC1 26 PHE A 122 LEU A 124 TRP A 128 TYR A 129 SITE 5 AC1 26 HOH A 615 HOH A 642 HOH A 659 HOH A 663 SITE 6 AC1 26 HOH A 686 HOH A 698 ARG B 57 ILE B 67 SITE 7 AC1 26 THR B 77 ASN B 78 SITE 1 AC2 8 PRO A 4 GLU A 7 ALA A 11 THR A 22 SITE 2 AC2 8 GLU A 23 HOH A 603 HOH A 608 HOH A 611 SITE 1 AC3 5 PHE A 18 TYR A 168 ASN A 171 ALA A 172 SITE 2 AC3 5 GLU B 89 SITE 1 AC4 16 MEN B 72 ALA B 75 ARG B 79 ARG B 80 SITE 2 AC4 16 ALA B 83 CYS B 84 ARG B 86 ASP B 87 SITE 3 AC4 16 ILE B 90 ARG B 110 LEU B 115 LEU B 122 SITE 4 AC4 16 THR B 124 SER B 128 HOH B 304 HOH B 412 SITE 1 AC5 24 LEU A 24 ASP A 28 ARG A 33 GLN A 147 SITE 2 AC5 24 ASN B 35 LEU B 38 ASP B 39 ALA B 144 SITE 3 AC5 24 ASN B 145 ASP B 146 ILE B 150 THR B 151 SITE 4 AC5 24 PRO B 152 GLY B 153 CYS B 155 HOH B 306 SITE 5 AC5 24 HOH B 312 HOH B 313 HOH B 315 HOH B 321 SITE 6 AC5 24 HOH B 326 HOH B 362 HOH B 363 HOH B 396 SITE 1 AC6 5 THR A 45 GLU B 17 PHE B 18 LEU B 19 SITE 2 AC6 5 HOH B 302 CRYST1 187.169 187.169 59.927 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005343 0.003085 0.000000 0.00000 SCALE2 0.000000 0.006169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016687 0.00000