HEADER PHOTOSYNTHESIS 16-APR-20 6YQ8 TITLE CRYSTAL STRUCTURE OF NATIVE PHYCOCYANIN FROM T. ELONGATUS IN TITLE 2 SPACEGROUP P63 AT 1.8 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-PHYCOCYANIN ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: C-PHYCOCYANIN BETA CHAIN; COMPND 7 CHAIN: B; COMPND 8 OTHER_DETAILS: RESIDUE 72: N4-METHYLASPARAGINE; PARENT ASN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: BP-1; SOURCE 5 GENE: CPCA, TLR1958; SOURCE 6 EXPRESSION_SYSTEM: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 197221; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 10 ORGANISM_TAXID: 197221; SOURCE 11 STRAIN: BP-1 KEYWDS NATIVE C-PHYCOCYANIN, ANTENNA PROTEIN, HETERODIMER, LIGAND-BOUND, KEYWDS 2 PHYCOBILISOME, CHROMOPHORE, ELECTRON TRANSPORT, PHOTOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR C.G.FEILER,S.FALKE,I.SARROU REVDAT 3 24-JAN-24 6YQ8 1 REMARK REVDAT 2 17-FEB-21 6YQ8 1 JRNL REVDAT 1 20-JAN-21 6YQ8 0 JRNL AUTH I.SARROU,C.G.FEILER,S.FALKE,N.PEARD,O.YEFANOV,H.CHAPMAN JRNL TITL C-PHYCOCYANIN AS A HIGHLY ATTRACTIVE MODEL SYSTEM IN PROTEIN JRNL TITL 2 CRYSTALLOGRAPHY: UNIQUE CRYSTALLIZATION PROPERTIES AND JRNL TITL 3 PACKING-DIVERSITY SCREENING. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 77 224 2021 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 33559611 JRNL DOI 10.1107/S2059798320016071 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.360 REMARK 3 FREE R VALUE TEST SET COUNT : 2100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3200 - 4.4800 1.00 3226 148 0.1618 0.1896 REMARK 3 2 4.4800 - 3.5600 1.00 3116 142 0.1522 0.1733 REMARK 3 3 3.5600 - 3.1100 1.00 3104 141 0.1780 0.1842 REMARK 3 4 3.1100 - 2.8300 1.00 3068 140 0.1849 0.2024 REMARK 3 5 2.8300 - 2.6200 1.00 3057 140 0.1888 0.2137 REMARK 3 6 2.6200 - 2.4700 1.00 3077 140 0.1796 0.2275 REMARK 3 7 2.4700 - 2.3500 1.00 3100 141 0.1730 0.1979 REMARK 3 8 2.3500 - 2.2400 1.00 3043 139 0.1794 0.1955 REMARK 3 9 2.2400 - 2.1600 1.00 3038 139 0.1863 0.2089 REMARK 3 10 2.1600 - 2.0800 1.00 3027 138 0.2131 0.2297 REMARK 3 11 2.0800 - 2.0200 1.00 3083 140 0.2309 0.2416 REMARK 3 12 2.0200 - 1.9600 1.00 3021 138 0.2536 0.2972 REMARK 3 13 1.9600 - 1.9100 1.00 3066 140 0.2863 0.2985 REMARK 3 14 1.9100 - 1.8600 1.00 3010 137 0.3335 0.3627 REMARK 3 15 1.8600 - 1.8200 0.98 3003 137 0.3651 0.3909 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.244 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.721 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2773 REMARK 3 ANGLE : 1.318 3748 REMARK 3 CHIRALITY : 0.063 407 REMARK 3 PLANARITY : 0.007 481 REMARK 3 DIHEDRAL : 15.908 450 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2643 -50.1538 16.2263 REMARK 3 T TENSOR REMARK 3 T11: 0.4085 T22: 0.5853 REMARK 3 T33: 0.4015 T12: -0.1633 REMARK 3 T13: 0.0129 T23: -0.0661 REMARK 3 L TENSOR REMARK 3 L11: 3.3327 L22: 4.8276 REMARK 3 L33: 1.2852 L12: -2.1129 REMARK 3 L13: 0.5692 L23: -1.0743 REMARK 3 S TENSOR REMARK 3 S11: 0.0581 S12: -0.3124 S13: 0.2462 REMARK 3 S21: 0.3923 S22: -0.1079 S23: 0.2423 REMARK 3 S31: -0.0522 S32: -0.1661 S33: 0.0609 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9306 -24.3178 14.4167 REMARK 3 T TENSOR REMARK 3 T11: 0.5737 T22: 0.6006 REMARK 3 T33: 0.8852 T12: 0.0545 REMARK 3 T13: 0.0612 T23: -0.1705 REMARK 3 L TENSOR REMARK 3 L11: 2.1669 L22: 3.0312 REMARK 3 L33: 2.2938 L12: 0.9749 REMARK 3 L13: 0.0181 L23: 0.1236 REMARK 3 S TENSOR REMARK 3 S11: 0.0761 S12: -0.5018 S13: 1.0059 REMARK 3 S21: 0.3498 S22: -0.1754 S23: 1.0293 REMARK 3 S31: -0.5973 S32: -0.4588 S33: 0.0528 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2957 -40.5446 3.8389 REMARK 3 T TENSOR REMARK 3 T11: 0.5362 T22: 0.5170 REMARK 3 T33: 0.4765 T12: -0.1295 REMARK 3 T13: -0.0354 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 4.0341 L22: 2.1534 REMARK 3 L33: 2.3456 L12: -0.4825 REMARK 3 L13: 0.0178 L23: -1.2579 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: 0.1296 S13: 0.0290 REMARK 3 S21: -0.8093 S22: 0.1539 S23: 0.1039 REMARK 3 S31: -0.0088 S32: -0.1444 S33: 0.0631 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9047 -49.1340 5.2989 REMARK 3 T TENSOR REMARK 3 T11: 0.4713 T22: 0.6842 REMARK 3 T33: 0.5639 T12: -0.0984 REMARK 3 T13: -0.1127 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.0317 L22: 2.4927 REMARK 3 L33: 4.4302 L12: -0.0774 REMARK 3 L13: 0.5743 L23: -3.2721 REMARK 3 S TENSOR REMARK 3 S11: -0.1771 S12: 0.0977 S13: 0.1602 REMARK 3 S21: -0.9456 S22: 0.3134 S23: 1.2033 REMARK 3 S31: 0.1309 S32: -0.6335 S33: -0.2417 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.8059 -65.6478 4.3475 REMARK 3 T TENSOR REMARK 3 T11: 0.3676 T22: 0.5741 REMARK 3 T33: 0.3628 T12: -0.1329 REMARK 3 T13: 0.0042 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 4.4257 L22: 0.9226 REMARK 3 L33: 0.4254 L12: -0.6154 REMARK 3 L13: 0.1568 L23: 0.1718 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: 0.2930 S13: 0.0374 REMARK 3 S21: -0.1051 S22: -0.0343 S23: -0.2293 REMARK 3 S31: 0.0295 S32: 0.0823 S33: 0.0294 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YQ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292108080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48140 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 44.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.13 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6YPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1% NUCLEOSIDES MIX, 0.1M BUFFER REMARK 280 SYSTEM3, 50% PRECIPITANT MIX 3, MORPHEUS SCREEN, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.67900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.67900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.67900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 15 O HOH A 301 1.40 REMARK 500 HH12 ARG A 42 OD1 ASP B 25 1.51 REMARK 500 NE2 GLN A 15 O HOH A 301 1.88 REMARK 500 O3 PGE B 207 O HOH B 301 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 374 O HOH B 434 1556 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 38 CG - SD - CE ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 68 -13.99 -142.36 REMARK 500 SER A 76 -53.22 -20.88 REMARK 500 LEU A 111 -43.16 -130.70 REMARK 500 THR B 75 147.33 80.73 REMARK 500 CYS B 109 -54.90 -133.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PGE A 206 REMARK 610 PGE B 207 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYC B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYC B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 211 DBREF 6YQ8 A 1 162 UNP P50032 PHCA_THEEB 1 162 DBREF 6YQ8 B 1 172 UNP P50033 PHCB_THEEB 1 172 SEQRES 1 A 162 MET LYS THR PRO ILE THR GLU ALA ILE ALA ALA ALA ASP SEQRES 2 A 162 THR GLN GLY ARG PHE LEU SER ASN THR GLU LEU GLN ALA SEQRES 3 A 162 VAL ASP GLY ARG PHE LYS ARG ALA VAL ALA SER MET GLU SEQRES 4 A 162 ALA ALA ARG ALA LEU THR ASN ASN ALA GLN SER LEU ILE SEQRES 5 A 162 ASP GLY ALA ALA GLN ALA VAL TYR GLN LYS PHE PRO TYR SEQRES 6 A 162 THR THR THR MET GLN GLY SER GLN TYR ALA SER THR PRO SEQRES 7 A 162 GLU GLY LYS ALA LYS CYS ALA ARG ASP ILE GLY TYR TYR SEQRES 8 A 162 LEU ARG MET VAL THR TYR CYS LEU VAL ALA GLY GLY THR SEQRES 9 A 162 GLY PRO MET ASP GLU TYR LEU ILE ALA GLY LEU SER GLU SEQRES 10 A 162 ILE ASN SER THR PHE ASP LEU SER PRO SER TRP TYR ILE SEQRES 11 A 162 GLU ALA LEU LYS TYR ILE LYS ALA ASN HIS GLY LEU THR SEQRES 12 A 162 GLY GLN ALA ALA VAL GLU ALA ASN ALA TYR ILE ASP TYR SEQRES 13 A 162 ALA ILE ASN ALA LEU SER SEQRES 1 B 172 MET LEU ASP ALA PHE ALA LYS VAL VAL ALA GLN ALA ASP SEQRES 2 B 172 ALA ARG GLY GLU PHE LEU THR ASN ALA GLN PHE ASP ALA SEQRES 3 B 172 LEU SER ASN LEU VAL LYS GLU GLY ASN LYS ARG LEU ASP SEQRES 4 B 172 ALA VAL ASN ARG ILE THR SER ASN ALA SER THR ILE VAL SEQRES 5 B 172 ALA ASN ALA ALA ARG ALA LEU PHE ALA GLU GLN PRO GLN SEQRES 6 B 172 LEU ILE GLN PRO GLY GLY MEN ALA TYR THR ASN ARG ARG SEQRES 7 B 172 MET ALA ALA CYS LEU ARG ASP MET GLU ILE ILE LEU ARG SEQRES 8 B 172 TYR VAL THR TYR ALA ILE LEU ALA GLY ASP SER SER VAL SEQRES 9 B 172 LEU ASP ASP ARG CYS LEU ASN GLY LEU ARG GLU THR TYR SEQRES 10 B 172 GLN ALA LEU GLY THR PRO GLY SER SER VAL ALA VAL ALA SEQRES 11 B 172 ILE GLN LYS MET LYS ASP ALA ALA ILE ALA ILE ALA ASN SEQRES 12 B 172 ASP PRO ASN GLY ILE THR PRO GLY ASP CYS SER ALA LEU SEQRES 13 B 172 MET SER GLU ILE ALA GLY TYR PHE ASP ARG ALA ALA ALA SEQRES 14 B 172 ALA VAL ALA MODRES 6YQ8 MEN B 72 ASN MODIFIED RESIDUE HET MEN B 72 16 HET CYC A 201 80 HET GOL A 202 14 HET GOL A 203 14 HET EDO A 204 10 HET PGE A 205 24 HET PGE A 206 7 HET CYC B 201 80 HET CYC B 202 80 HET GOL B 203 14 HET EDO B 204 10 HET EDO B 205 10 HET EDO B 206 10 HET PGE B 207 7 HET EDO B 208 10 HET PGE B 209 24 HET EDO B 210 10 HET EDO B 211 10 HETNAM MEN N-METHYL ASPARAGINE HETNAM CYC PHYCOCYANOBILIN HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MEN C5 H10 N2 O3 FORMUL 3 CYC 3(C33 H40 N4 O6) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 6 EDO 7(C2 H6 O2) FORMUL 7 PGE 4(C6 H14 O4) FORMUL 20 HOH *220(H2 O) HELIX 1 AA1 THR A 3 GLN A 15 1 13 HELIX 2 AA2 SER A 20 ASN A 47 1 28 HELIX 3 AA3 ASN A 47 PHE A 63 1 17 HELIX 4 AA4 PRO A 64 THR A 68 5 5 HELIX 5 AA5 THR A 77 GLY A 102 1 26 HELIX 6 AA6 THR A 104 LEU A 111 1 8 HELIX 7 AA7 GLY A 114 PHE A 122 1 9 HELIX 8 AA8 SER A 125 HIS A 140 1 16 HELIX 9 AA9 THR A 143 LEU A 161 1 19 HELIX 10 AB1 ASP B 3 ARG B 15 1 13 HELIX 11 AB2 THR B 20 GLU B 33 1 14 HELIX 12 AB3 GLU B 33 ASN B 47 1 15 HELIX 13 AB4 ASN B 47 GLN B 63 1 17 HELIX 14 AB5 PRO B 64 GLN B 68 5 5 HELIX 15 AB6 THR B 75 GLY B 100 1 26 HELIX 16 AB7 SER B 102 CYS B 109 1 8 HELIX 17 AB8 GLY B 112 GLY B 121 1 10 HELIX 18 AB9 PRO B 123 ASN B 143 1 21 HELIX 19 AC1 CYS B 153 ALA B 172 1 20 LINK SG CYS A 84 CAC CYC A 201 1555 1555 1.77 LINK C GLY B 71 N MEN B 72 1555 1555 1.33 LINK C MEN B 72 N ALA B 73 1555 1555 1.33 LINK SG CYS B 82 CAC CYC B 201 1555 1555 1.77 LINK SG CYS B 153 CAC CYC B 202 1555 1555 1.77 SITE 1 AC1 27 VAL A 59 THR A 66 SER A 72 GLN A 73 SITE 2 AC1 27 TYR A 74 ALA A 75 GLY A 80 LYS A 83 SITE 3 AC1 27 CYS A 84 ARG A 86 ASP A 87 TYR A 90 SITE 4 AC1 27 TYR A 110 ILE A 118 PHE A 122 LEU A 124 SITE 5 AC1 27 TRP A 128 TYR A 129 HOH A 305 HOH A 306 SITE 6 AC1 27 HOH A 310 HOH A 323 ARG B 57 ILE B 67 SITE 7 AC1 27 THR B 75 ASN B 76 HOH B 336 SITE 1 AC2 7 ILE A 112 ALA A 113 GLY A 114 LEU A 115 SITE 2 AC2 7 SER A 116 GLU A 117 HOH A 321 SITE 1 AC3 4 MET A 1 THR A 6 MET B 1 ARG B 108 SITE 1 AC4 4 LYS A 32 HOH A 319 HOH A 342 VAL B 31 SITE 1 AC5 7 ARG A 17 SER A 20 THR A 22 GLU A 23 SITE 2 AC5 7 HOH A 314 HOH A 315 HOH A 325 SITE 1 AC6 5 MET A 1 GLU A 109 MET B 1 SER B 103 SITE 2 AC6 5 ASP B 107 SITE 1 AC7 16 MEN B 72 ALA B 73 ARG B 77 ARG B 78 SITE 2 AC7 16 ALA B 81 CYS B 82 ARG B 84 ASP B 85 SITE 3 AC7 16 ARG B 108 LEU B 113 LEU B 120 THR B 122 SITE 4 AC7 16 SER B 126 HOH B 326 HOH B 354 HOH B 398 SITE 1 AC8 25 ASN A 21 LEU A 24 GLN A 25 ASP A 28 SITE 2 AC8 25 ASN B 35 LYS B 36 LEU B 38 ASP B 39 SITE 3 AC8 25 ASN B 143 ASP B 144 ILE B 148 THR B 149 SITE 4 AC8 25 PRO B 150 GLY B 151 CYS B 153 MET B 157 SITE 5 AC8 25 SER B 158 ALA B 161 HOH B 313 HOH B 332 SITE 6 AC8 25 HOH B 333 HOH B 346 HOH B 361 HOH B 362 SITE 7 AC8 25 HOH B 372 SITE 1 AC9 5 ARG B 43 ASN B 146 SER B 154 HOH B 334 SITE 2 AC9 5 HOH B 363 SITE 1 AD1 5 GLU B 33 ARG B 37 HOH B 316 HOH B 320 SITE 2 AD1 5 HOH B 369 SITE 1 AD2 7 ALA B 12 ARG B 15 GLU B 17 PHE B 18 SITE 2 AD2 7 LEU B 19 THR B 20 GLN B 23 SITE 1 AD3 5 GLU A 117 HOH A 302 ALA B 80 ARG B 84 SITE 2 AD3 5 HOH B 378 SITE 1 AD4 5 ALA B 140 ILE B 141 ASP B 144 HOH B 301 SITE 2 AD4 5 HOH B 328 SITE 1 AD5 3 ASP B 106 ARG B 166 HOH B 302 SITE 1 AD6 9 LYS B 7 ASP B 101 SER B 102 GLY B 162 SITE 2 AD6 9 TYR B 163 ARG B 166 HOH B 342 HOH B 344 SITE 3 AD6 9 HOH B 413 SITE 1 AD7 6 GLY B 147 ALA B 155 SER B 158 GLU B 159 SITE 2 AD7 6 HOH B 319 HOH B 400 SITE 1 AD8 2 THR B 116 HOH B 310 CRYST1 153.514 153.514 39.358 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006514 0.003761 0.000000 0.00000 SCALE2 0.000000 0.007522 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025408 0.00000