data_6YRB # _entry.id 6YRB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.334 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6YRB WWPDB D_1292108148 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6YRB _pdbx_database_status.recvd_initial_deposition_date 2020-04-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Serris, A.' 1 ? 'Rey, F.A.' 2 ? 'Guardado-Calvo, P.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cell _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1097-4172 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 183 _citation.language ? _citation.page_first 442 _citation.page_last ? _citation.title 'The Hantavirus Surface Glycoprotein Lattice and Its Fusion Control Mechanism.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2020.08.023 _citation.pdbx_database_id_PubMed 32937107 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Serris, A.' 1 ? primary 'Stass, R.' 2 ? primary 'Bignon, E.A.' 3 ? primary 'Muena, N.A.' 4 ? primary 'Manuguerra, J.C.' 5 ? primary 'Jangra, R.K.' 6 ? primary 'Li, S.' 7 ? primary 'Chandran, K.' 8 ? primary 'Tischler, N.D.' 9 ? primary 'Huiskonen, J.T.' 10 ? primary 'Rey, F.A.' 11 ? primary 'Guardado-Calvo, P.' 12 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6YRB _cell.details ? _cell.formula_units_Z ? _cell.length_a 67.854 _cell.length_a_esd ? _cell.length_b 67.854 _cell.length_b_esd ? _cell.length_c 121.891 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YRB _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Envelope polyprotein' 15939.975 2 ? ? ? ? 2 polymer nat ;RNA (5'-D(*())-R(P*UP*UP*UP*())-3') ; 1531.952 2 ? ? ? ? 3 branched man ;beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; 732.682 1 ? ? ? ? 4 non-polymer syn 'IODIDE ION' 126.904 6 ? ? ? ? 5 water nat water 18.015 55 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'M polyprotein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;KVTGCTVFCTLAGPGASCEAYSENGIFNISSPTCLVNKVQRFRGSEQKINFICQRVDQDVVVYCNGQKKVILTKTLVIGQ CIYTFTSLFSLMPDVAHSLAVELCVPGLHGGPFEDDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK ; ;KVTGCTVFCTLAGPGASCEAYSENGIFNISSPTCLVNKVQRFRGSEQKINFICQRVDQDVVVYCNGQKKVILTKTLVIGQ CIYTFTSLFSLMPDVAHSLAVELCVPGLHGGPFEDDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK ; A,B ? 2 polyribonucleotide no no AUUUA AUUUA C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 THR n 1 4 GLY n 1 5 CYS n 1 6 THR n 1 7 VAL n 1 8 PHE n 1 9 CYS n 1 10 THR n 1 11 LEU n 1 12 ALA n 1 13 GLY n 1 14 PRO n 1 15 GLY n 1 16 ALA n 1 17 SER n 1 18 CYS n 1 19 GLU n 1 20 ALA n 1 21 TYR n 1 22 SER n 1 23 GLU n 1 24 ASN n 1 25 GLY n 1 26 ILE n 1 27 PHE n 1 28 ASN n 1 29 ILE n 1 30 SER n 1 31 SER n 1 32 PRO n 1 33 THR n 1 34 CYS n 1 35 LEU n 1 36 VAL n 1 37 ASN n 1 38 LYS n 1 39 VAL n 1 40 GLN n 1 41 ARG n 1 42 PHE n 1 43 ARG n 1 44 GLY n 1 45 SER n 1 46 GLU n 1 47 GLN n 1 48 LYS n 1 49 ILE n 1 50 ASN n 1 51 PHE n 1 52 ILE n 1 53 CYS n 1 54 GLN n 1 55 ARG n 1 56 VAL n 1 57 ASP n 1 58 GLN n 1 59 ASP n 1 60 VAL n 1 61 VAL n 1 62 VAL n 1 63 TYR n 1 64 CYS n 1 65 ASN n 1 66 GLY n 1 67 GLN n 1 68 LYS n 1 69 LYS n 1 70 VAL n 1 71 ILE n 1 72 LEU n 1 73 THR n 1 74 LYS n 1 75 THR n 1 76 LEU n 1 77 VAL n 1 78 ILE n 1 79 GLY n 1 80 GLN n 1 81 CYS n 1 82 ILE n 1 83 TYR n 1 84 THR n 1 85 PHE n 1 86 THR n 1 87 SER n 1 88 LEU n 1 89 PHE n 1 90 SER n 1 91 LEU n 1 92 MET n 1 93 PRO n 1 94 ASP n 1 95 VAL n 1 96 ALA n 1 97 HIS n 1 98 SER n 1 99 LEU n 1 100 ALA n 1 101 VAL n 1 102 GLU n 1 103 LEU n 1 104 CYS n 1 105 VAL n 1 106 PRO n 1 107 GLY n 1 108 LEU n 1 109 HIS n 1 110 GLY n 1 111 GLY n 1 112 PRO n 1 113 PHE n 1 114 GLU n 1 115 ASP n 1 116 ASP n 1 117 ASP n 1 118 ASP n 1 119 LYS n 1 120 ALA n 1 121 GLY n 1 122 TRP n 1 123 SER n 1 124 HIS n 1 125 PRO n 1 126 GLN n 1 127 PHE n 1 128 GLU n 1 129 LYS n 1 130 GLY n 1 131 GLY n 1 132 GLY n 1 133 SER n 1 134 GLY n 1 135 GLY n 1 136 GLY n 1 137 SER n 1 138 GLY n 1 139 GLY n 1 140 GLY n 1 141 SER n 1 142 TRP n 1 143 SER n 1 144 HIS n 1 145 PRO n 1 146 GLN n 1 147 PHE n 1 148 GLU n 1 149 LYS n 2 1 A n 2 2 U n 2 3 U n 2 4 U n 2 5 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 149 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'M, ADT63_77597gpM, ADT63_77598gpM' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Andes orthohantavirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1980456 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7227 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 5 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Drosophila melanogaster' _entity_src_nat.pdbx_ncbi_taxonomy_id 7227 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP Q9E006_9VIRU Q9E006 ? 1 ;KVTGCTVFCTLAGPGASCEAYSENGIFNISSPTCLVNKVQRFRGSEQKINFICQRVDQDVVVYCNGQKKVILTKTLVIGQ CIYTFTSLFSLMPDVAHSLAVELCVPGLHG ; 375 2 PDB 6YRB 6YRB ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6YRB A 1 ? 110 ? Q9E006 375 ? 484 ? 375 484 2 1 6YRB B 1 ? 110 ? Q9E006 375 ? 484 ? 375 484 3 2 6YRB C 1 ? 5 ? 6YRB 0 ? 4 ? 0 4 4 2 6YRB D 1 ? 5 ? 6YRB 0 ? 4 ? 0 4 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6YRB GLY A 111 ? UNP Q9E006 ? ? 'expression tag' 485 1 1 6YRB PRO A 112 ? UNP Q9E006 ? ? 'expression tag' 486 2 1 6YRB PHE A 113 ? UNP Q9E006 ? ? 'expression tag' 487 3 1 6YRB GLU A 114 ? UNP Q9E006 ? ? 'expression tag' 488 4 1 6YRB ASP A 115 ? UNP Q9E006 ? ? 'expression tag' 489 5 1 6YRB ASP A 116 ? UNP Q9E006 ? ? 'expression tag' 490 6 1 6YRB ASP A 117 ? UNP Q9E006 ? ? 'expression tag' 491 7 1 6YRB ASP A 118 ? UNP Q9E006 ? ? 'expression tag' 492 8 1 6YRB LYS A 119 ? UNP Q9E006 ? ? 'expression tag' 493 9 1 6YRB ALA A 120 ? UNP Q9E006 ? ? 'expression tag' 494 10 1 6YRB GLY A 121 ? UNP Q9E006 ? ? 'expression tag' 495 11 1 6YRB TRP A 122 ? UNP Q9E006 ? ? 'expression tag' 496 12 1 6YRB SER A 123 ? UNP Q9E006 ? ? 'expression tag' 497 13 1 6YRB HIS A 124 ? UNP Q9E006 ? ? 'expression tag' 498 14 1 6YRB PRO A 125 ? UNP Q9E006 ? ? 'expression tag' 499 15 1 6YRB GLN A 126 ? UNP Q9E006 ? ? 'expression tag' 500 16 1 6YRB PHE A 127 ? UNP Q9E006 ? ? 'expression tag' 501 17 1 6YRB GLU A 128 ? UNP Q9E006 ? ? 'expression tag' 502 18 1 6YRB LYS A 129 ? UNP Q9E006 ? ? 'expression tag' 503 19 1 6YRB GLY A 130 ? UNP Q9E006 ? ? 'expression tag' 504 20 1 6YRB GLY A 131 ? UNP Q9E006 ? ? 'expression tag' 505 21 1 6YRB GLY A 132 ? UNP Q9E006 ? ? 'expression tag' 506 22 1 6YRB SER A 133 ? UNP Q9E006 ? ? 'expression tag' 507 23 1 6YRB GLY A 134 ? UNP Q9E006 ? ? 'expression tag' 508 24 1 6YRB GLY A 135 ? UNP Q9E006 ? ? 'expression tag' 509 25 1 6YRB GLY A 136 ? UNP Q9E006 ? ? 'expression tag' 510 26 1 6YRB SER A 137 ? UNP Q9E006 ? ? 'expression tag' 511 27 1 6YRB GLY A 138 ? UNP Q9E006 ? ? 'expression tag' 512 28 1 6YRB GLY A 139 ? UNP Q9E006 ? ? 'expression tag' 513 29 1 6YRB GLY A 140 ? UNP Q9E006 ? ? 'expression tag' 514 30 1 6YRB SER A 141 ? UNP Q9E006 ? ? 'expression tag' 515 31 1 6YRB TRP A 142 ? UNP Q9E006 ? ? 'expression tag' 516 32 1 6YRB SER A 143 ? UNP Q9E006 ? ? 'expression tag' 517 33 1 6YRB HIS A 144 ? UNP Q9E006 ? ? 'expression tag' 518 34 1 6YRB PRO A 145 ? UNP Q9E006 ? ? 'expression tag' 519 35 1 6YRB GLN A 146 ? UNP Q9E006 ? ? 'expression tag' 520 36 1 6YRB PHE A 147 ? UNP Q9E006 ? ? 'expression tag' 521 37 1 6YRB GLU A 148 ? UNP Q9E006 ? ? 'expression tag' 522 38 1 6YRB LYS A 149 ? UNP Q9E006 ? ? 'expression tag' 523 39 2 6YRB GLY B 111 ? UNP Q9E006 ? ? 'expression tag' 485 40 2 6YRB PRO B 112 ? UNP Q9E006 ? ? 'expression tag' 486 41 2 6YRB PHE B 113 ? UNP Q9E006 ? ? 'expression tag' 487 42 2 6YRB GLU B 114 ? UNP Q9E006 ? ? 'expression tag' 488 43 2 6YRB ASP B 115 ? UNP Q9E006 ? ? 'expression tag' 489 44 2 6YRB ASP B 116 ? UNP Q9E006 ? ? 'expression tag' 490 45 2 6YRB ASP B 117 ? UNP Q9E006 ? ? 'expression tag' 491 46 2 6YRB ASP B 118 ? UNP Q9E006 ? ? 'expression tag' 492 47 2 6YRB LYS B 119 ? UNP Q9E006 ? ? 'expression tag' 493 48 2 6YRB ALA B 120 ? UNP Q9E006 ? ? 'expression tag' 494 49 2 6YRB GLY B 121 ? UNP Q9E006 ? ? 'expression tag' 495 50 2 6YRB TRP B 122 ? UNP Q9E006 ? ? 'expression tag' 496 51 2 6YRB SER B 123 ? UNP Q9E006 ? ? 'expression tag' 497 52 2 6YRB HIS B 124 ? UNP Q9E006 ? ? 'expression tag' 498 53 2 6YRB PRO B 125 ? UNP Q9E006 ? ? 'expression tag' 499 54 2 6YRB GLN B 126 ? UNP Q9E006 ? ? 'expression tag' 500 55 2 6YRB PHE B 127 ? UNP Q9E006 ? ? 'expression tag' 501 56 2 6YRB GLU B 128 ? UNP Q9E006 ? ? 'expression tag' 502 57 2 6YRB LYS B 129 ? UNP Q9E006 ? ? 'expression tag' 503 58 2 6YRB GLY B 130 ? UNP Q9E006 ? ? 'expression tag' 504 59 2 6YRB GLY B 131 ? UNP Q9E006 ? ? 'expression tag' 505 60 2 6YRB GLY B 132 ? UNP Q9E006 ? ? 'expression tag' 506 61 2 6YRB SER B 133 ? UNP Q9E006 ? ? 'expression tag' 507 62 2 6YRB GLY B 134 ? UNP Q9E006 ? ? 'expression tag' 508 63 2 6YRB GLY B 135 ? UNP Q9E006 ? ? 'expression tag' 509 64 2 6YRB GLY B 136 ? UNP Q9E006 ? ? 'expression tag' 510 65 2 6YRB SER B 137 ? UNP Q9E006 ? ? 'expression tag' 511 66 2 6YRB GLY B 138 ? UNP Q9E006 ? ? 'expression tag' 512 67 2 6YRB GLY B 139 ? UNP Q9E006 ? ? 'expression tag' 513 68 2 6YRB GLY B 140 ? UNP Q9E006 ? ? 'expression tag' 514 69 2 6YRB SER B 141 ? UNP Q9E006 ? ? 'expression tag' 515 70 2 6YRB TRP B 142 ? UNP Q9E006 ? ? 'expression tag' 516 71 2 6YRB SER B 143 ? UNP Q9E006 ? ? 'expression tag' 517 72 2 6YRB HIS B 144 ? UNP Q9E006 ? ? 'expression tag' 518 73 2 6YRB PRO B 145 ? UNP Q9E006 ? ? 'expression tag' 519 74 2 6YRB GLN B 146 ? UNP Q9E006 ? ? 'expression tag' 520 75 2 6YRB PHE B 147 ? UNP Q9E006 ? ? 'expression tag' 521 76 2 6YRB GLU B 148 ? UNP Q9E006 ? ? 'expression tag' 522 77 2 6YRB LYS B 149 ? UNP Q9E006 ? ? 'expression tag' 523 78 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6YRB _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2M NaCl, 0.1M Hepes 7.5, 35% MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-03-01 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.8 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.8 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6YRB _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.350 _reflns.d_resolution_low 37.700 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 11445 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.000 _reflns.pdbx_Rmerge_I_obs 0.199 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.100 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects 3 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.209 _reflns.pdbx_Rpim_I_all 0.066 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 114803 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.988 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 2.350 2.430 ? ? 10501 ? ? ? 1080 96.400 ? ? ? ? 1.294 ? ? ? ? ? ? ? ? 9.700 ? ? ? 1.700 1.366 0.435 ? 1 1 0.455 ? ? 9.100 37.700 ? ? 2055 ? ? ? 210 99.000 ? ? ? ? 0.141 ? ? ? ? ? ? ? ? 9.800 ? ? ? 15.700 0.149 0.048 ? 2 1 0.986 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 159.690 _refine.B_iso_mean 47.7928 _refine.B_iso_min 22.730 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6YRB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.3510 _refine.ls_d_res_low 37.6990 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11444 _refine.ls_number_reflns_R_free 570 _refine.ls_number_reflns_R_work 10874 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.6300 _refine.ls_percent_reflns_R_free 4.9800 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2280 _refine.ls_R_factor_R_free 0.2655 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2260 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.390 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 30.3700 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4200 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.3510 _refine_hist.d_res_low 37.6990 _refine_hist.number_atoms_solvent 55 _refine_hist.number_atoms_total 1738 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 209 _refine_hist.pdbx_B_iso_mean_ligand 76.18 _refine_hist.pdbx_B_iso_mean_solvent 43.13 _refine_hist.pdbx_number_atoms_protein 1498 _refine_hist.pdbx_number_atoms_nucleic_acid 130 _refine_hist.pdbx_number_atoms_ligand 55 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.351 2.5870 . . 126 2691 99.0000 . . . 0.3423 0.0000 0.2982 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5870 2.9612 . . 128 2723 100.0000 . . . 0.3223 0.0000 0.2642 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9612 3.7303 . . 179 2695 100.0000 . . . 0.2599 0.0000 0.2119 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7303 37.699 . . 137 2765 100.0000 . . . 0.2412 0.0000 0.2089 . . . . . . . . . . . # _struct.entry_id 6YRB _struct.title 'Crystal structure of the tetramerization domain of the glycoprotein Gn (Andes virus) at pH 7.5' _struct.pdbx_descriptor 'Envelope polyprotein,Envelope polyprotein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6YRB _struct_keywords.text 'class-II fusion protein hantavirus bunyavirus, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 5 ? M N N 5 ? N N N 5 ? O N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LEU A 72 ? PHE A 89 ? LEU A 446 PHE A 463 1 ? 18 HELX_P HELX_P2 AA2 VAL A 95 ? VAL A 105 ? VAL A 469 VAL A 479 1 ? 11 HELX_P HELX_P3 AA3 LEU B 72 ? PHE B 89 ? LEU B 446 PHE B 463 1 ? 18 HELX_P HELX_P4 AA4 VAL B 95 ? VAL B 105 ? VAL B 469 VAL B 479 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 64 SG ? ? A CYS 379 A CYS 438 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 18 SG ? ? A CYS 383 A CYS 392 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? A CYS 34 SG ? ? ? 1_555 A CYS 53 SG ? ? A CYS 408 A CYS 427 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf4 disulf ? ? A CYS 81 SG ? ? ? 1_555 A CYS 104 SG ? ? A CYS 455 A CYS 478 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf5 disulf ? ? B CYS 5 SG ? ? ? 1_555 B CYS 64 SG ? ? B CYS 379 B CYS 438 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf6 disulf ? ? B CYS 9 SG ? ? ? 1_555 B CYS 18 SG ? ? B CYS 383 B CYS 392 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf7 disulf ? ? B CYS 34 SG ? ? ? 1_555 B CYS 53 SG ? ? B CYS 408 B CYS 427 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf8 disulf ? ? B CYS 81 SG ? ? ? 1_555 B CYS 104 SG ? ? B CYS 455 B CYS 478 1_555 ? ? ? ? ? ? ? 2.030 ? ? covale1 covale one ? A ASN 28 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 402 E NAG 1 1_555 ? ? ? ? ? ? ? 1.445 ? N-Glycosylation covale2 covale both ? E NAG . O4 ? ? ? 1_555 E NAG . C1 ? ? E NAG 1 E NAG 2 1_555 ? ? ? ? ? ? ? 1.444 ? ? covale3 covale both ? E NAG . O6 ? ? ? 1_555 E FUC . C1 ? ? E NAG 1 E FUC 4 1_555 ? ? ? ? ? ? ? 1.443 ? ? covale4 covale both ? E NAG . O4 ? ? ? 1_555 E BMA . C1 ? ? E NAG 2 E BMA 3 1_555 ? ? ? ? ? ? ? 1.442 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 4 ? AA3 ? 3 ? AA4 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 6 ? ALA A 12 ? THR A 380 ALA A 386 AA1 2 GLY A 15 ? ILE A 26 ? GLY A 389 ILE A 400 AA1 3 GLU A 46 ? CYS A 53 ? GLU A 420 CYS A 427 AA2 1 ASN A 37 ? LYS A 38 ? ASN A 411 LYS A 412 AA2 2 ILE A 29 ? SER A 30 ? ILE A 403 SER A 404 AA2 3 VAL A 60 ? CYS A 64 ? VAL A 434 CYS A 438 AA2 4 LYS A 68 ? ILE A 71 ? LYS A 442 ILE A 445 AA3 1 THR B 6 ? ALA B 12 ? THR B 380 ALA B 386 AA3 2 GLY B 15 ? ILE B 26 ? GLY B 389 ILE B 400 AA3 3 GLU B 46 ? CYS B 53 ? GLU B 420 CYS B 427 AA4 1 ASN B 37 ? LYS B 38 ? ASN B 411 LYS B 412 AA4 2 ILE B 29 ? SER B 30 ? ILE B 403 SER B 404 AA4 3 VAL B 60 ? CYS B 64 ? VAL B 434 CYS B 438 AA4 4 GLN B 67 ? ILE B 71 ? GLN B 441 ILE B 445 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 6 ? N THR A 380 O TYR A 21 ? O TYR A 395 AA1 2 3 N ILE A 26 ? N ILE A 400 O GLU A 46 ? O GLU A 420 AA2 1 2 O LYS A 38 ? O LYS A 412 N ILE A 29 ? N ILE A 403 AA2 2 3 N SER A 30 ? N SER A 404 O TYR A 63 ? O TYR A 437 AA2 3 4 N VAL A 62 ? N VAL A 436 O LYS A 69 ? O LYS A 443 AA3 1 2 N THR B 10 ? N THR B 384 O SER B 17 ? O SER B 391 AA3 2 3 N ILE B 26 ? N ILE B 400 O GLU B 46 ? O GLU B 420 AA4 1 2 O LYS B 38 ? O LYS B 412 N ILE B 29 ? N ILE B 403 AA4 2 3 N SER B 30 ? N SER B 404 O TYR B 63 ? O TYR B 437 AA4 3 4 N VAL B 62 ? N VAL B 436 O LYS B 69 ? O LYS B 443 # _atom_sites.entry_id 6YRB _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.014738 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014738 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008204 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C I N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 375 ? ? ? A . n A 1 2 VAL 2 376 ? ? ? A . n A 1 3 THR 3 377 ? ? ? A . n A 1 4 GLY 4 378 ? ? ? A . n A 1 5 CYS 5 379 379 CYS CYS A . n A 1 6 THR 6 380 380 THR THR A . n A 1 7 VAL 7 381 381 VAL VAL A . n A 1 8 PHE 8 382 382 PHE PHE A . n A 1 9 CYS 9 383 383 CYS CYS A . n A 1 10 THR 10 384 384 THR THR A . n A 1 11 LEU 11 385 385 LEU LEU A . n A 1 12 ALA 12 386 386 ALA ALA A . n A 1 13 GLY 13 387 387 GLY GLY A . n A 1 14 PRO 14 388 388 PRO PRO A . n A 1 15 GLY 15 389 389 GLY GLY A . n A 1 16 ALA 16 390 390 ALA ALA A . n A 1 17 SER 17 391 391 SER SER A . n A 1 18 CYS 18 392 392 CYS CYS A . n A 1 19 GLU 19 393 393 GLU GLU A . n A 1 20 ALA 20 394 394 ALA ALA A . n A 1 21 TYR 21 395 395 TYR TYR A . n A 1 22 SER 22 396 396 SER SER A . n A 1 23 GLU 23 397 397 GLU GLU A . n A 1 24 ASN 24 398 398 ASN ASN A . n A 1 25 GLY 25 399 399 GLY GLY A . n A 1 26 ILE 26 400 400 ILE ILE A . n A 1 27 PHE 27 401 401 PHE PHE A . n A 1 28 ASN 28 402 402 ASN ASN A . n A 1 29 ILE 29 403 403 ILE ILE A . n A 1 30 SER 30 404 404 SER SER A . n A 1 31 SER 31 405 405 SER SER A . n A 1 32 PRO 32 406 406 PRO PRO A . n A 1 33 THR 33 407 407 THR THR A . n A 1 34 CYS 34 408 408 CYS CYS A . n A 1 35 LEU 35 409 409 LEU LEU A . n A 1 36 VAL 36 410 410 VAL VAL A . n A 1 37 ASN 37 411 411 ASN ASN A . n A 1 38 LYS 38 412 412 LYS LYS A . n A 1 39 VAL 39 413 413 VAL VAL A . n A 1 40 GLN 40 414 ? ? ? A . n A 1 41 ARG 41 415 ? ? ? A . n A 1 42 PHE 42 416 ? ? ? A . n A 1 43 ARG 43 417 ? ? ? A . n A 1 44 GLY 44 418 ? ? ? A . n A 1 45 SER 45 419 419 SER SER A . n A 1 46 GLU 46 420 420 GLU GLU A . n A 1 47 GLN 47 421 421 GLN GLN A . n A 1 48 LYS 48 422 422 LYS LYS A . n A 1 49 ILE 49 423 423 ILE ILE A . n A 1 50 ASN 50 424 424 ASN ASN A . n A 1 51 PHE 51 425 425 PHE PHE A . n A 1 52 ILE 52 426 426 ILE ILE A . n A 1 53 CYS 53 427 427 CYS CYS A . n A 1 54 GLN 54 428 428 GLN GLN A . n A 1 55 ARG 55 429 429 ARG ARG A . n A 1 56 VAL 56 430 430 VAL VAL A . n A 1 57 ASP 57 431 431 ASP ASP A . n A 1 58 GLN 58 432 432 GLN GLN A . n A 1 59 ASP 59 433 433 ASP ASP A . n A 1 60 VAL 60 434 434 VAL VAL A . n A 1 61 VAL 61 435 435 VAL VAL A . n A 1 62 VAL 62 436 436 VAL VAL A . n A 1 63 TYR 63 437 437 TYR TYR A . n A 1 64 CYS 64 438 438 CYS CYS A . n A 1 65 ASN 65 439 439 ASN ASN A . n A 1 66 GLY 66 440 440 GLY GLY A . n A 1 67 GLN 67 441 441 GLN GLN A . n A 1 68 LYS 68 442 442 LYS LYS A . n A 1 69 LYS 69 443 443 LYS LYS A . n A 1 70 VAL 70 444 444 VAL VAL A . n A 1 71 ILE 71 445 445 ILE ILE A . n A 1 72 LEU 72 446 446 LEU LEU A . n A 1 73 THR 73 447 447 THR THR A . n A 1 74 LYS 74 448 448 LYS LYS A . n A 1 75 THR 75 449 449 THR THR A . n A 1 76 LEU 76 450 450 LEU LEU A . n A 1 77 VAL 77 451 451 VAL VAL A . n A 1 78 ILE 78 452 452 ILE ILE A . n A 1 79 GLY 79 453 453 GLY GLY A . n A 1 80 GLN 80 454 454 GLN GLN A . n A 1 81 CYS 81 455 455 CYS CYS A . n A 1 82 ILE 82 456 456 ILE ILE A . n A 1 83 TYR 83 457 457 TYR TYR A . n A 1 84 THR 84 458 458 THR THR A . n A 1 85 PHE 85 459 459 PHE PHE A . n A 1 86 THR 86 460 460 THR THR A . n A 1 87 SER 87 461 461 SER SER A . n A 1 88 LEU 88 462 462 LEU LEU A . n A 1 89 PHE 89 463 463 PHE PHE A . n A 1 90 SER 90 464 464 SER SER A . n A 1 91 LEU 91 465 465 LEU LEU A . n A 1 92 MET 92 466 466 MET MET A . n A 1 93 PRO 93 467 467 PRO PRO A . n A 1 94 ASP 94 468 468 ASP ASP A . n A 1 95 VAL 95 469 469 VAL VAL A . n A 1 96 ALA 96 470 470 ALA ALA A . n A 1 97 HIS 97 471 471 HIS HIS A . n A 1 98 SER 98 472 472 SER SER A . n A 1 99 LEU 99 473 473 LEU LEU A . n A 1 100 ALA 100 474 474 ALA ALA A . n A 1 101 VAL 101 475 475 VAL VAL A . n A 1 102 GLU 102 476 476 GLU GLU A . n A 1 103 LEU 103 477 477 LEU LEU A . n A 1 104 CYS 104 478 478 CYS CYS A . n A 1 105 VAL 105 479 479 VAL VAL A . n A 1 106 PRO 106 480 480 PRO PRO A . n A 1 107 GLY 107 481 481 GLY GLY A . n A 1 108 LEU 108 482 482 LEU LEU A . n A 1 109 HIS 109 483 483 HIS HIS A . n A 1 110 GLY 110 484 ? ? ? A . n A 1 111 GLY 111 485 ? ? ? A . n A 1 112 PRO 112 486 ? ? ? A . n A 1 113 PHE 113 487 ? ? ? A . n A 1 114 GLU 114 488 ? ? ? A . n A 1 115 ASP 115 489 ? ? ? A . n A 1 116 ASP 116 490 ? ? ? A . n A 1 117 ASP 117 491 ? ? ? A . n A 1 118 ASP 118 492 ? ? ? A . n A 1 119 LYS 119 493 ? ? ? A . n A 1 120 ALA 120 494 ? ? ? A . n A 1 121 GLY 121 495 ? ? ? A . n A 1 122 TRP 122 496 ? ? ? A . n A 1 123 SER 123 497 ? ? ? A . n A 1 124 HIS 124 498 ? ? ? A . n A 1 125 PRO 125 499 ? ? ? A . n A 1 126 GLN 126 500 ? ? ? A . n A 1 127 PHE 127 501 ? ? ? A . n A 1 128 GLU 128 502 ? ? ? A . n A 1 129 LYS 129 503 ? ? ? A . n A 1 130 GLY 130 504 ? ? ? A . n A 1 131 GLY 131 505 ? ? ? A . n A 1 132 GLY 132 506 ? ? ? A . n A 1 133 SER 133 507 ? ? ? A . n A 1 134 GLY 134 508 ? ? ? A . n A 1 135 GLY 135 509 ? ? ? A . n A 1 136 GLY 136 510 ? ? ? A . n A 1 137 SER 137 511 ? ? ? A . n A 1 138 GLY 138 512 ? ? ? A . n A 1 139 GLY 139 513 ? ? ? A . n A 1 140 GLY 140 514 ? ? ? A . n A 1 141 SER 141 515 ? ? ? A . n A 1 142 TRP 142 516 ? ? ? A . n A 1 143 SER 143 517 ? ? ? A . n A 1 144 HIS 144 518 ? ? ? A . n A 1 145 PRO 145 519 ? ? ? A . n A 1 146 GLN 146 520 ? ? ? A . n A 1 147 PHE 147 521 ? ? ? A . n A 1 148 GLU 148 522 ? ? ? A . n A 1 149 LYS 149 523 ? ? ? A . n B 1 1 LYS 1 375 ? ? ? B . n B 1 2 VAL 2 376 ? ? ? B . n B 1 3 THR 3 377 ? ? ? B . n B 1 4 GLY 4 378 ? ? ? B . n B 1 5 CYS 5 379 379 CYS CYS B . n B 1 6 THR 6 380 380 THR THR B . n B 1 7 VAL 7 381 381 VAL VAL B . n B 1 8 PHE 8 382 382 PHE PHE B . n B 1 9 CYS 9 383 383 CYS CYS B . n B 1 10 THR 10 384 384 THR THR B . n B 1 11 LEU 11 385 385 LEU LEU B . n B 1 12 ALA 12 386 386 ALA ALA B . n B 1 13 GLY 13 387 387 GLY GLY B . n B 1 14 PRO 14 388 388 PRO PRO B . n B 1 15 GLY 15 389 389 GLY GLY B . n B 1 16 ALA 16 390 390 ALA ALA B . n B 1 17 SER 17 391 391 SER SER B . n B 1 18 CYS 18 392 392 CYS CYS B . n B 1 19 GLU 19 393 393 GLU GLU B . n B 1 20 ALA 20 394 394 ALA ALA B . n B 1 21 TYR 21 395 395 TYR TYR B . n B 1 22 SER 22 396 396 SER SER B . n B 1 23 GLU 23 397 397 GLU GLU B . n B 1 24 ASN 24 398 398 ASN ASN B . n B 1 25 GLY 25 399 399 GLY GLY B . n B 1 26 ILE 26 400 400 ILE ILE B . n B 1 27 PHE 27 401 401 PHE PHE B . n B 1 28 ASN 28 402 402 ASN ASN B . n B 1 29 ILE 29 403 403 ILE ILE B . n B 1 30 SER 30 404 404 SER SER B . n B 1 31 SER 31 405 405 SER SER B . n B 1 32 PRO 32 406 406 PRO PRO B . n B 1 33 THR 33 407 407 THR THR B . n B 1 34 CYS 34 408 408 CYS CYS B . n B 1 35 LEU 35 409 409 LEU LEU B . n B 1 36 VAL 36 410 410 VAL VAL B . n B 1 37 ASN 37 411 411 ASN ASN B . n B 1 38 LYS 38 412 412 LYS LYS B . n B 1 39 VAL 39 413 413 VAL VAL B . n B 1 40 GLN 40 414 ? ? ? B . n B 1 41 ARG 41 415 ? ? ? B . n B 1 42 PHE 42 416 ? ? ? B . n B 1 43 ARG 43 417 ? ? ? B . n B 1 44 GLY 44 418 ? ? ? B . n B 1 45 SER 45 419 419 SER SER B . n B 1 46 GLU 46 420 420 GLU GLU B . n B 1 47 GLN 47 421 421 GLN GLN B . n B 1 48 LYS 48 422 422 LYS LYS B . n B 1 49 ILE 49 423 423 ILE ILE B . n B 1 50 ASN 50 424 424 ASN ASN B . n B 1 51 PHE 51 425 425 PHE PHE B . n B 1 52 ILE 52 426 426 ILE ILE B . n B 1 53 CYS 53 427 427 CYS CYS B . n B 1 54 GLN 54 428 428 GLN GLN B . n B 1 55 ARG 55 429 429 ARG ARG B . n B 1 56 VAL 56 430 430 VAL VAL B . n B 1 57 ASP 57 431 431 ASP ASP B . n B 1 58 GLN 58 432 432 GLN GLN B . n B 1 59 ASP 59 433 433 ASP ASP B . n B 1 60 VAL 60 434 434 VAL VAL B . n B 1 61 VAL 61 435 435 VAL VAL B . n B 1 62 VAL 62 436 436 VAL VAL B . n B 1 63 TYR 63 437 437 TYR TYR B . n B 1 64 CYS 64 438 438 CYS CYS B . n B 1 65 ASN 65 439 439 ASN ASN B . n B 1 66 GLY 66 440 440 GLY GLY B . n B 1 67 GLN 67 441 441 GLN GLN B . n B 1 68 LYS 68 442 442 LYS LYS B . n B 1 69 LYS 69 443 443 LYS LYS B . n B 1 70 VAL 70 444 444 VAL VAL B . n B 1 71 ILE 71 445 445 ILE ILE B . n B 1 72 LEU 72 446 446 LEU LEU B . n B 1 73 THR 73 447 447 THR THR B . n B 1 74 LYS 74 448 448 LYS LYS B . n B 1 75 THR 75 449 449 THR THR B . n B 1 76 LEU 76 450 450 LEU LEU B . n B 1 77 VAL 77 451 451 VAL VAL B . n B 1 78 ILE 78 452 452 ILE ILE B . n B 1 79 GLY 79 453 453 GLY GLY B . n B 1 80 GLN 80 454 454 GLN GLN B . n B 1 81 CYS 81 455 455 CYS CYS B . n B 1 82 ILE 82 456 456 ILE ILE B . n B 1 83 TYR 83 457 457 TYR TYR B . n B 1 84 THR 84 458 458 THR THR B . n B 1 85 PHE 85 459 459 PHE PHE B . n B 1 86 THR 86 460 460 THR THR B . n B 1 87 SER 87 461 461 SER SER B . n B 1 88 LEU 88 462 462 LEU LEU B . n B 1 89 PHE 89 463 463 PHE PHE B . n B 1 90 SER 90 464 464 SER SER B . n B 1 91 LEU 91 465 465 LEU LEU B . n B 1 92 MET 92 466 466 MET MET B . n B 1 93 PRO 93 467 467 PRO PRO B . n B 1 94 ASP 94 468 468 ASP ASP B . n B 1 95 VAL 95 469 469 VAL VAL B . n B 1 96 ALA 96 470 470 ALA ALA B . n B 1 97 HIS 97 471 471 HIS HIS B . n B 1 98 SER 98 472 472 SER SER B . n B 1 99 LEU 99 473 473 LEU LEU B . n B 1 100 ALA 100 474 474 ALA ALA B . n B 1 101 VAL 101 475 475 VAL VAL B . n B 1 102 GLU 102 476 476 GLU GLU B . n B 1 103 LEU 103 477 477 LEU LEU B . n B 1 104 CYS 104 478 478 CYS CYS B . n B 1 105 VAL 105 479 479 VAL VAL B . n B 1 106 PRO 106 480 480 PRO PRO B . n B 1 107 GLY 107 481 481 GLY GLY B . n B 1 108 LEU 108 482 482 LEU LEU B . n B 1 109 HIS 109 483 ? ? ? B . n B 1 110 GLY 110 484 ? ? ? B . n B 1 111 GLY 111 485 ? ? ? B . n B 1 112 PRO 112 486 ? ? ? B . n B 1 113 PHE 113 487 ? ? ? B . n B 1 114 GLU 114 488 ? ? ? B . n B 1 115 ASP 115 489 ? ? ? B . n B 1 116 ASP 116 490 ? ? ? B . n B 1 117 ASP 117 491 ? ? ? B . n B 1 118 ASP 118 492 ? ? ? B . n B 1 119 LYS 119 493 ? ? ? B . n B 1 120 ALA 120 494 ? ? ? B . n B 1 121 GLY 121 495 ? ? ? B . n B 1 122 TRP 122 496 ? ? ? B . n B 1 123 SER 123 497 ? ? ? B . n B 1 124 HIS 124 498 ? ? ? B . n B 1 125 PRO 125 499 ? ? ? B . n B 1 126 GLN 126 500 ? ? ? B . n B 1 127 PHE 127 501 ? ? ? B . n B 1 128 GLU 128 502 ? ? ? B . n B 1 129 LYS 129 503 ? ? ? B . n B 1 130 GLY 130 504 ? ? ? B . n B 1 131 GLY 131 505 ? ? ? B . n B 1 132 GLY 132 506 ? ? ? B . n B 1 133 SER 133 507 ? ? ? B . n B 1 134 GLY 134 508 ? ? ? B . n B 1 135 GLY 135 509 ? ? ? B . n B 1 136 GLY 136 510 ? ? ? B . n B 1 137 SER 137 511 ? ? ? B . n B 1 138 GLY 138 512 ? ? ? B . n B 1 139 GLY 139 513 ? ? ? B . n B 1 140 GLY 140 514 ? ? ? B . n B 1 141 SER 141 515 ? ? ? B . n B 1 142 TRP 142 516 ? ? ? B . n B 1 143 SER 143 517 ? ? ? B . n B 1 144 HIS 144 518 ? ? ? B . n B 1 145 PRO 145 519 ? ? ? B . n B 1 146 GLN 146 520 ? ? ? B . n B 1 147 PHE 147 521 ? ? ? B . n B 1 148 GLU 148 522 ? ? ? B . n B 1 149 LYS 149 523 ? ? ? B . n C 2 1 A 1 0 0 A A C . n C 2 2 U 2 1 1 U U C . n C 2 3 U 3 2 2 U U C . n C 2 4 U 4 3 3 U U C . n C 2 5 A 5 4 4 A A C . n D 2 1 A 1 0 0 A A D . n D 2 2 U 2 1 1 U U D . n D 2 3 U 3 2 2 U U D . n D 2 4 U 4 3 3 U U D . n D 2 5 A 5 4 4 A A D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 IOD 1 605 1 IOD IOD A . G 4 IOD 1 606 2 IOD IOD A . H 4 IOD 1 607 5 IOD IOD A . I 4 IOD 1 601 3 IOD IOD B . J 4 IOD 1 602 4 IOD IOD B . K 4 IOD 1 603 6 IOD IOD B . L 5 HOH 1 701 14 HOH HOH A . L 5 HOH 2 702 54 HOH HOH A . L 5 HOH 3 703 50 HOH HOH A . L 5 HOH 4 704 3 HOH HOH A . L 5 HOH 5 705 18 HOH HOH A . L 5 HOH 6 706 1 HOH HOH A . L 5 HOH 7 707 5 HOH HOH A . L 5 HOH 8 708 32 HOH HOH A . L 5 HOH 9 709 28 HOH HOH A . L 5 HOH 10 710 48 HOH HOH A . L 5 HOH 11 711 9 HOH HOH A . L 5 HOH 12 712 41 HOH HOH A . L 5 HOH 13 713 8 HOH HOH A . L 5 HOH 14 714 16 HOH HOH A . L 5 HOH 15 715 11 HOH HOH A . L 5 HOH 16 716 27 HOH HOH A . L 5 HOH 17 717 4 HOH HOH A . L 5 HOH 18 718 37 HOH HOH A . L 5 HOH 19 719 51 HOH HOH A . L 5 HOH 20 720 21 HOH HOH A . L 5 HOH 21 721 34 HOH HOH A . L 5 HOH 22 722 26 HOH HOH A . L 5 HOH 23 723 45 HOH HOH A . L 5 HOH 24 724 22 HOH HOH A . L 5 HOH 25 725 49 HOH HOH A . L 5 HOH 26 726 40 HOH HOH A . L 5 HOH 27 727 47 HOH HOH A . L 5 HOH 28 728 42 HOH HOH A . L 5 HOH 29 729 52 HOH HOH A . L 5 HOH 30 730 53 HOH HOH A . L 5 HOH 31 731 46 HOH HOH A . M 5 HOH 1 701 36 HOH HOH B . M 5 HOH 2 702 7 HOH HOH B . M 5 HOH 3 703 35 HOH HOH B . M 5 HOH 4 704 30 HOH HOH B . M 5 HOH 5 705 44 HOH HOH B . M 5 HOH 6 706 24 HOH HOH B . M 5 HOH 7 707 17 HOH HOH B . M 5 HOH 8 708 31 HOH HOH B . M 5 HOH 9 709 23 HOH HOH B . M 5 HOH 10 710 2 HOH HOH B . M 5 HOH 11 711 10 HOH HOH B . M 5 HOH 12 712 20 HOH HOH B . M 5 HOH 13 713 12 HOH HOH B . M 5 HOH 14 714 13 HOH HOH B . M 5 HOH 15 715 39 HOH HOH B . M 5 HOH 16 716 33 HOH HOH B . M 5 HOH 17 717 38 HOH HOH B . M 5 HOH 18 718 43 HOH HOH B . M 5 HOH 19 719 29 HOH HOH B . M 5 HOH 20 720 55 HOH HOH B . M 5 HOH 21 721 19 HOH HOH B . N 5 HOH 1 101 6 HOH HOH C . O 5 HOH 1 101 25 HOH HOH D . O 5 HOH 2 102 15 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3,4 A,C,D,E,F,G,H,L,N,O 1 5,6,7,8 B,C,D,I,J,K,M,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 25990 ? 1 MORE -132 ? 1 'SSA (A^2)' 35540 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -y,x,z 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 y,-x,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 5_545 x+1/2,y-1/2,z+1/2 1.0000000000 0.0000000000 0.0000000000 33.9270000000 0.0000000000 1.0000000000 0.0000000000 -33.9270000000 0.0000000000 0.0000000000 1.0000000000 60.9455000000 6 'crystal symmetry operation' 6_455 -x-1/2,-y+1/2,z+1/2 -1.0000000000 0.0000000000 0.0000000000 -33.9270000000 0.0000000000 -1.0000000000 0.0000000000 33.9270000000 0.0000000000 0.0000000000 1.0000000000 60.9455000000 7 'crystal symmetry operation' 7_555 -y+1/2,x+1/2,z+1/2 0.0000000000 -1.0000000000 0.0000000000 33.9270000000 1.0000000000 0.0000000000 0.0000000000 33.9270000000 0.0000000000 0.0000000000 1.0000000000 60.9455000000 8 'crystal symmetry operation' 8_445 y-1/2,-x-1/2,z+1/2 0.0000000000 1.0000000000 0.0000000000 -33.9270000000 -1.0000000000 0.0000000000 0.0000000000 -33.9270000000 0.0000000000 0.0000000000 1.0000000000 60.9455000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-10-14 2 'Structure model' 1 1 2020-10-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 3.5395 10.4266 -21.6013 0.4378 ? 0.0264 ? 0.0230 ? 0.3896 ? 0.0140 ? 0.3443 ? 0.0394 ? -0.7591 ? 0.3199 ? 7.1150 ? -2.8507 ? 1.1404 ? 0.0815 ? -0.3853 ? 0.0914 ? -1.2589 ? 0.3308 ? 0.7422 ? 1.5888 ? -0.1120 ? 0.0572 ? 2 'X-RAY DIFFRACTION' ? refined 2.6898 15.3152 -33.6715 0.3912 ? -0.1286 ? 0.0040 ? 0.4509 ? 0.0188 ? 0.2683 ? 2.5718 ? -2.1524 ? -1.3223 ? 1.9158 ? 1.0592 ? 1.0690 ? 0.8333 ? 0.2241 ? 0.6420 ? -0.1544 ? -0.8435 ? -0.0425 ? -0.2914 ? -0.3512 ? 0.4217 ? 3 'X-RAY DIFFRACTION' ? refined 8.4993 10.7081 -28.2786 0.3508 ? -0.0121 ? 0.0558 ? 0.3754 ? 0.0054 ? 0.3491 ? 1.4391 ? -1.0444 ? -0.0380 ? 0.6282 ? 0.0584 ? -0.0286 ? 0.0327 ? 0.0397 ? -0.1417 ? -0.0556 ? -0.0745 ? -0.0441 ? -0.1077 ? -0.1566 ? -0.0002 ? 4 'X-RAY DIFFRACTION' ? refined -0.8574 13.3721 -15.3295 0.3043 ? -0.0145 ? 0.0399 ? 0.3089 ? 0.0290 ? 0.3220 ? 0.6156 ? 0.6558 ? -1.3062 ? 0.0391 ? -0.6031 ? 1.5538 ? -0.1222 ? -0.1015 ? -0.1160 ? -0.2042 ? -0.0738 ? -0.4367 ? -0.1080 ? 0.3453 ? -0.0687 ? 5 'X-RAY DIFFRACTION' ? refined -8.9594 17.0994 -6.4804 0.4530 ? 0.0785 ? -0.0314 ? 0.4566 ? 0.0066 ? 0.4332 ? 0.4180 ? 1.1788 ? 0.1229 ? 4.2901 ? 1.7590 ? 1.7306 ? -0.0509 ? 0.4280 ? 1.0438 ? 0.9392 ? 0.0729 ? 1.3791 ? 0.7166 ? 0.3936 ? 0.0207 ? 6 'X-RAY DIFFRACTION' ? refined -21.0451 32.7714 -31.9908 0.5162 ? -0.0340 ? 0.0214 ? 0.4716 ? -0.0159 ? 0.4485 ? 1.9770 ? -0.7600 ? -0.6452 ? 0.8110 ? 0.5082 ? 0.2840 ? -0.2069 ? -0.7120 ? -0.4514 ? 0.6686 ? 0.3531 ? -0.1809 ? -0.0292 ? -0.3198 ? 0.0005 ? 7 'X-RAY DIFFRACTION' ? refined -18.7738 42.6948 -28.1853 0.4902 ? -0.0044 ? 0.0355 ? 0.4542 ? -0.1770 ? 0.4007 ? 2.7175 ? 0.6196 ? -0.0626 ? 3.2455 ? -0.1765 ? 5.0935 ? 0.3696 ? -0.9035 ? 0.6217 ? 1.6086 ? 0.9583 ? 0.2313 ? 0.1623 ? 0.4455 ? 2.2342 ? 8 'X-RAY DIFFRACTION' ? refined -22.0321 39.1454 -33.6743 0.3623 ? 0.0082 ? -0.0583 ? 0.3599 ? -0.0095 ? 0.4305 ? 0.2047 ? -0.3942 ? 0.0356 ? 0.8013 ? -0.1598 ? 0.0240 ? 0.0855 ? -0.1666 ? -0.3523 ? -0.2529 ? -0.2500 ? -0.4597 ? 0.0207 ? 0.3695 ? -0.0789 ? 9 'X-RAY DIFFRACTION' ? refined -18.1384 33.3924 -42.0303 0.4261 ? -0.0013 ? -0.0420 ? 0.3967 ? 0.0208 ? 0.4060 ? 0.6538 ? -0.5133 ? 0.0823 ? 1.4746 ? 0.7590 ? 0.5480 ? -0.2908 ? 0.2292 ? 0.3664 ? -0.3551 ? 0.0108 ? -0.0536 ? -0.3751 ? 0.5216 ? 0.0001 ? 10 'X-RAY DIFFRACTION' ? refined -24.2536 21.1607 -54.3730 0.6109 ? 0.0454 ? -0.0433 ? 0.5042 ? -0.0827 ? 0.4268 ? 0.2838 ? 0.3091 ? 0.2071 ? 0.2889 ? 0.4158 ? 0.7458 ? -0.2257 ? 0.2767 ? 0.2380 ? 0.1723 ? 0.1357 ? -0.1183 ? 0.4306 ? -0.1388 ? 0.0000 ? 11 'X-RAY DIFFRACTION' ? refined -14.7858 27.5844 -41.1090 0.5254 ? 0.0831 ? -0.1599 ? 0.6134 ? -0.0512 ? 0.5266 ? 0.4108 ? 0.1197 ? -0.1060 ? 0.3302 ? 0.2097 ? 0.2342 ? -0.3025 ? -0.2289 ? -0.3483 ? 0.7253 ? 0.5300 ? -1.1515 ? 0.3354 ? 1.8501 ? -0.0516 ? 12 'X-RAY DIFFRACTION' ? refined -2.4241 20.1774 -19.0684 0.6578 ? 0.0629 ? 0.1705 ? 0.4448 ? 0.0047 ? 0.5839 ? 0.8313 ? -0.0046 ? 0.4517 ? 0.1586 ? -0.0655 ? 0.2740 ? 0.2146 ? -0.5434 ? 1.4173 ? 0.9092 ? 0.1783 ? 0.6020 ? -1.3932 ? -0.7346 ? 0.0117 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 379 ? ? A 392 ? '(chain A and resid 379:392)' 2 'X-RAY DIFFRACTION' 2 ? ? A 393 ? ? A 407 ? '(chain A and resid 393:407)' 3 'X-RAY DIFFRACTION' 3 ? ? A 408 ? ? A 433 ? '(chain A and resid 408:433)' 4 'X-RAY DIFFRACTION' 4 ? ? A 434 ? ? A 468 ? '(chain A and resid 434:468)' 5 'X-RAY DIFFRACTION' 5 ? ? A 469 ? ? A 483 ? '(chain A and resid 469:483)' 6 'X-RAY DIFFRACTION' 6 ? ? B 379 ? ? B 402 ? '(chain B and resid 379:402)' 7 'X-RAY DIFFRACTION' 7 ? ? B 403 ? ? B 413 ? '(chain B and resid 403:413)' 8 'X-RAY DIFFRACTION' 8 ? ? B 419 ? ? B 433 ? '(chain B and resid 419:433)' 9 'X-RAY DIFFRACTION' 9 ? ? B 434 ? ? B 461 ? '(chain B and resid 434:461)' 10 'X-RAY DIFFRACTION' 10 ? ? B 462 ? ? B 482 ? '(chain B and resid 462:482)' 11 'X-RAY DIFFRACTION' 11 ? ? C 0 ? ? C 4 ? '(chain C and resid 0:4)' 12 'X-RAY DIFFRACTION' 12 ? ? D 0 ? ? D 4 ? '(chain D and resid 0:4)' # _phasing.method SAD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.7.4 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14rc3 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 5 # _pdbx_entry_details.entry_id 6YRB _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C2 _pdbx_validate_rmsd_angle.auth_asym_id_1 D _pdbx_validate_rmsd_angle.auth_comp_id_1 U _pdbx_validate_rmsd_angle.auth_seq_id_1 3 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N1 _pdbx_validate_rmsd_angle.auth_asym_id_2 D _pdbx_validate_rmsd_angle.auth_comp_id_2 U _pdbx_validate_rmsd_angle.auth_seq_id_2 3 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_3 D _pdbx_validate_rmsd_angle.auth_comp_id_3 U _pdbx_validate_rmsd_angle.auth_seq_id_3 3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.99 _pdbx_validate_rmsd_angle.angle_target_value 117.70 _pdbx_validate_rmsd_angle.angle_deviation 7.29 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.20 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 398 ? ? -99.55 32.00 2 1 ASN A 411 ? ? -163.91 108.29 3 1 LEU A 482 ? ? 60.18 -135.06 4 1 SER B 396 ? ? -160.66 118.24 5 1 ASN B 411 ? ? -163.12 114.50 6 1 MET B 466 ? ? -114.37 77.81 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C A 0 ? "O5'" ? C A 1 "O5'" 2 1 Y 1 C A 0 ? "C5'" ? C A 1 "C5'" 3 1 Y 1 C A 0 ? "C4'" ? C A 1 "C4'" 4 1 Y 1 C A 0 ? "O4'" ? C A 1 "O4'" 5 1 Y 1 C A 0 ? "C3'" ? C A 1 "C3'" 6 1 Y 1 C A 0 ? "C2'" ? C A 1 "C2'" 7 1 Y 1 C A 0 ? "O2'" ? C A 1 "O2'" 8 1 Y 1 C A 0 ? "C1'" ? C A 1 "C1'" 9 1 Y 1 C A 0 ? N9 ? C A 1 N9 10 1 Y 1 C A 0 ? C8 ? C A 1 C8 11 1 Y 1 C A 0 ? N7 ? C A 1 N7 12 1 Y 1 C A 0 ? C5 ? C A 1 C5 13 1 Y 1 C A 0 ? C6 ? C A 1 C6 14 1 Y 1 C A 0 ? N6 ? C A 1 N6 15 1 Y 1 C A 0 ? N1 ? C A 1 N1 16 1 Y 1 C A 0 ? C2 ? C A 1 C2 17 1 Y 1 C A 0 ? N3 ? C A 1 N3 18 1 Y 1 C A 0 ? C4 ? C A 1 C4 19 1 Y 1 C A 4 ? "C5'" ? C A 5 "C5'" 20 1 Y 1 C A 4 ? "C4'" ? C A 5 "C4'" 21 1 Y 1 C A 4 ? "O4'" ? C A 5 "O4'" 22 1 Y 1 C A 4 ? "C3'" ? C A 5 "C3'" 23 1 Y 1 C A 4 ? "O3'" ? C A 5 "O3'" 24 1 Y 1 C A 4 ? "C2'" ? C A 5 "C2'" 25 1 Y 1 C A 4 ? "O2'" ? C A 5 "O2'" 26 1 Y 1 C A 4 ? "C1'" ? C A 5 "C1'" 27 1 Y 1 C A 4 ? N9 ? C A 5 N9 28 1 Y 1 C A 4 ? C8 ? C A 5 C8 29 1 Y 1 C A 4 ? N7 ? C A 5 N7 30 1 Y 1 C A 4 ? C5 ? C A 5 C5 31 1 Y 1 C A 4 ? C6 ? C A 5 C6 32 1 Y 1 C A 4 ? N6 ? C A 5 N6 33 1 Y 1 C A 4 ? N1 ? C A 5 N1 34 1 Y 1 C A 4 ? C2 ? C A 5 C2 35 1 Y 1 C A 4 ? N3 ? C A 5 N3 36 1 Y 1 C A 4 ? C4 ? C A 5 C4 37 1 Y 1 D A 0 ? "O5'" ? D A 1 "O5'" 38 1 Y 1 D A 0 ? "C5'" ? D A 1 "C5'" 39 1 Y 1 D A 0 ? "C4'" ? D A 1 "C4'" 40 1 Y 1 D A 0 ? "O4'" ? D A 1 "O4'" 41 1 Y 1 D A 0 ? "C3'" ? D A 1 "C3'" 42 1 Y 1 D A 0 ? "C2'" ? D A 1 "C2'" 43 1 Y 1 D A 0 ? "O2'" ? D A 1 "O2'" 44 1 Y 1 D A 0 ? "C1'" ? D A 1 "C1'" 45 1 Y 1 D A 0 ? N9 ? D A 1 N9 46 1 Y 1 D A 0 ? C8 ? D A 1 C8 47 1 Y 1 D A 0 ? N7 ? D A 1 N7 48 1 Y 1 D A 0 ? C5 ? D A 1 C5 49 1 Y 1 D A 0 ? C6 ? D A 1 C6 50 1 Y 1 D A 0 ? N6 ? D A 1 N6 51 1 Y 1 D A 0 ? N1 ? D A 1 N1 52 1 Y 1 D A 0 ? C2 ? D A 1 C2 53 1 Y 1 D A 0 ? N3 ? D A 1 N3 54 1 Y 1 D A 0 ? C4 ? D A 1 C4 55 1 Y 1 D A 4 ? "C5'" ? D A 5 "C5'" 56 1 Y 1 D A 4 ? "C4'" ? D A 5 "C4'" 57 1 Y 1 D A 4 ? "O4'" ? D A 5 "O4'" 58 1 Y 1 D A 4 ? "C3'" ? D A 5 "C3'" 59 1 Y 1 D A 4 ? "O3'" ? D A 5 "O3'" 60 1 Y 1 D A 4 ? "C2'" ? D A 5 "C2'" 61 1 Y 1 D A 4 ? "O2'" ? D A 5 "O2'" 62 1 Y 1 D A 4 ? "C1'" ? D A 5 "C1'" 63 1 Y 1 D A 4 ? N9 ? D A 5 N9 64 1 Y 1 D A 4 ? C8 ? D A 5 C8 65 1 Y 1 D A 4 ? N7 ? D A 5 N7 66 1 Y 1 D A 4 ? C5 ? D A 5 C5 67 1 Y 1 D A 4 ? C6 ? D A 5 C6 68 1 Y 1 D A 4 ? N6 ? D A 5 N6 69 1 Y 1 D A 4 ? N1 ? D A 5 N1 70 1 Y 1 D A 4 ? C2 ? D A 5 C2 71 1 Y 1 D A 4 ? N3 ? D A 5 N3 72 1 Y 1 D A 4 ? C4 ? D A 5 C4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 375 ? A LYS 1 2 1 Y 1 A VAL 376 ? A VAL 2 3 1 Y 1 A THR 377 ? A THR 3 4 1 Y 1 A GLY 378 ? A GLY 4 5 1 Y 1 A GLN 414 ? A GLN 40 6 1 Y 1 A ARG 415 ? A ARG 41 7 1 Y 1 A PHE 416 ? A PHE 42 8 1 Y 1 A ARG 417 ? A ARG 43 9 1 Y 1 A GLY 418 ? A GLY 44 10 1 Y 1 A GLY 484 ? A GLY 110 11 1 Y 1 A GLY 485 ? A GLY 111 12 1 Y 1 A PRO 486 ? A PRO 112 13 1 Y 1 A PHE 487 ? A PHE 113 14 1 Y 1 A GLU 488 ? A GLU 114 15 1 Y 1 A ASP 489 ? A ASP 115 16 1 Y 1 A ASP 490 ? A ASP 116 17 1 Y 1 A ASP 491 ? A ASP 117 18 1 Y 1 A ASP 492 ? A ASP 118 19 1 Y 1 A LYS 493 ? A LYS 119 20 1 Y 1 A ALA 494 ? A ALA 120 21 1 Y 1 A GLY 495 ? A GLY 121 22 1 Y 1 A TRP 496 ? A TRP 122 23 1 Y 1 A SER 497 ? A SER 123 24 1 Y 1 A HIS 498 ? A HIS 124 25 1 Y 1 A PRO 499 ? A PRO 125 26 1 Y 1 A GLN 500 ? A GLN 126 27 1 Y 1 A PHE 501 ? A PHE 127 28 1 Y 1 A GLU 502 ? A GLU 128 29 1 Y 1 A LYS 503 ? A LYS 129 30 1 Y 1 A GLY 504 ? A GLY 130 31 1 Y 1 A GLY 505 ? A GLY 131 32 1 Y 1 A GLY 506 ? A GLY 132 33 1 Y 1 A SER 507 ? A SER 133 34 1 Y 1 A GLY 508 ? A GLY 134 35 1 Y 1 A GLY 509 ? A GLY 135 36 1 Y 1 A GLY 510 ? A GLY 136 37 1 Y 1 A SER 511 ? A SER 137 38 1 Y 1 A GLY 512 ? A GLY 138 39 1 Y 1 A GLY 513 ? A GLY 139 40 1 Y 1 A GLY 514 ? A GLY 140 41 1 Y 1 A SER 515 ? A SER 141 42 1 Y 1 A TRP 516 ? A TRP 142 43 1 Y 1 A SER 517 ? A SER 143 44 1 Y 1 A HIS 518 ? A HIS 144 45 1 Y 1 A PRO 519 ? A PRO 145 46 1 Y 1 A GLN 520 ? A GLN 146 47 1 Y 1 A PHE 521 ? A PHE 147 48 1 Y 1 A GLU 522 ? A GLU 148 49 1 Y 1 A LYS 523 ? A LYS 149 50 1 Y 1 B LYS 375 ? B LYS 1 51 1 Y 1 B VAL 376 ? B VAL 2 52 1 Y 1 B THR 377 ? B THR 3 53 1 Y 1 B GLY 378 ? B GLY 4 54 1 Y 1 B GLN 414 ? B GLN 40 55 1 Y 1 B ARG 415 ? B ARG 41 56 1 Y 1 B PHE 416 ? B PHE 42 57 1 Y 1 B ARG 417 ? B ARG 43 58 1 Y 1 B GLY 418 ? B GLY 44 59 1 Y 1 B HIS 483 ? B HIS 109 60 1 Y 1 B GLY 484 ? B GLY 110 61 1 Y 1 B GLY 485 ? B GLY 111 62 1 Y 1 B PRO 486 ? B PRO 112 63 1 Y 1 B PHE 487 ? B PHE 113 64 1 Y 1 B GLU 488 ? B GLU 114 65 1 Y 1 B ASP 489 ? B ASP 115 66 1 Y 1 B ASP 490 ? B ASP 116 67 1 Y 1 B ASP 491 ? B ASP 117 68 1 Y 1 B ASP 492 ? B ASP 118 69 1 Y 1 B LYS 493 ? B LYS 119 70 1 Y 1 B ALA 494 ? B ALA 120 71 1 Y 1 B GLY 495 ? B GLY 121 72 1 Y 1 B TRP 496 ? B TRP 122 73 1 Y 1 B SER 497 ? B SER 123 74 1 Y 1 B HIS 498 ? B HIS 124 75 1 Y 1 B PRO 499 ? B PRO 125 76 1 Y 1 B GLN 500 ? B GLN 126 77 1 Y 1 B PHE 501 ? B PHE 127 78 1 Y 1 B GLU 502 ? B GLU 128 79 1 Y 1 B LYS 503 ? B LYS 129 80 1 Y 1 B GLY 504 ? B GLY 130 81 1 Y 1 B GLY 505 ? B GLY 131 82 1 Y 1 B GLY 506 ? B GLY 132 83 1 Y 1 B SER 507 ? B SER 133 84 1 Y 1 B GLY 508 ? B GLY 134 85 1 Y 1 B GLY 509 ? B GLY 135 86 1 Y 1 B GLY 510 ? B GLY 136 87 1 Y 1 B SER 511 ? B SER 137 88 1 Y 1 B GLY 512 ? B GLY 138 89 1 Y 1 B GLY 513 ? B GLY 139 90 1 Y 1 B GLY 514 ? B GLY 140 91 1 Y 1 B SER 515 ? B SER 141 92 1 Y 1 B TRP 516 ? B TRP 142 93 1 Y 1 B SER 517 ? B SER 143 94 1 Y 1 B HIS 518 ? B HIS 144 95 1 Y 1 B PRO 519 ? B PRO 145 96 1 Y 1 B GLN 520 ? B GLN 146 97 1 Y 1 B PHE 521 ? B PHE 147 98 1 Y 1 B GLU 522 ? B GLU 148 99 1 Y 1 B LYS 523 ? B LYS 149 # _pdbx_audit_support.funding_organization 'French National Research Agency' _pdbx_audit_support.country France _pdbx_audit_support.grant_number ANR-18-CE11-0011 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero E 3 NAG 1 E NAG 1 A NAG 1483 n E 3 NAG 2 E NAG 2 A NAG 1484 n E 3 BMA 3 E BMA 3 A BMA 1485 n E 3 FUC 4 E FUC 4 A FUC 1486 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 'DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 3 'WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1221m-1a_1-5]/1-1-2-3/a4-b1_a6-d1_b4-c1' WURCS PDB2Glycan 1.1.0 3 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}[(6+1)][a-L-Fucp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 3 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 3 4 FUC C1 O1 1 NAG O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 NAG 1 n 3 NAG 2 n 3 BMA 3 n 3 FUC 4 n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 FUC ? ? FUC ? ? 'SUBJECT OF INVESTIGATION' ? 2 BMA ? ? BMA ? ? 'SUBJECT OF INVESTIGATION' ? 3 IOD ? ? IOD ? ? 'SUBJECT OF INVESTIGATION' ? 4 NAG ? ? NAG ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'IODIDE ION' IOD 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? #