HEADER IMMUNE SYSTEM 24-APR-20 6YT7 TITLE GLYCOSYLATED KNOB/DUMMY-HOLE FC FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN GAMMA-1 HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IMMUNOGLOBULIN GAMMA-1 HEAVY CHAIN NIE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: KNOB-DUMMY PROTEIN (T366W,K370E); COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: HOLE PROTEIN (Y349C,T366S,L368A,Y407V) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: IGHG1; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: HEK KEYWDS BISPECIFIC ANTIBODY FC ENGINEERING, KNOB-INTO-HOLE, FORMAT CHAIN KEYWDS 2 EXCHANGE, FORCE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.KUGLSTATTER,L.LEIBROCK,J.BENZ REVDAT 3 09-OCT-24 6YT7 1 REMARK REVDAT 2 24-JAN-24 6YT7 1 REMARK REVDAT 1 14-OCT-20 6YT7 0 JRNL AUTH S.DENGL,K.MAYER,F.BORMANN,H.DUERR,E.HOFFMANN,B.NUSSBAUM, JRNL AUTH 2 M.TISCHLER,M.WAGNER,A.KUGLSTATTER,L.LEIBROCK,C.BULDUN, JRNL AUTH 3 G.GEORGES,U.BRINKMANN JRNL TITL FORMAT CHAIN EXCHANGE (FORCE) FOR HIGH-THROUGHPUT GENERATION JRNL TITL 2 OF BISPECIFIC ANTIBODIES IN COMBINATORIAL BINDER-FORMAT JRNL TITL 3 MATRICES. JRNL REF NAT COMMUN V. 11 4974 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 33009381 JRNL DOI 10.1038/S41467-020-18477-7 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3893 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.1 REMARK 3 NUMBER OF REFLECTIONS : 64377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 67.1100 - 4.4000 1.00 3629 176 0.1736 0.2168 REMARK 3 2 4.4000 - 3.4900 1.00 3443 203 0.1966 0.2389 REMARK 3 3 3.4900 - 3.0500 1.00 3427 175 0.2275 0.2815 REMARK 3 4 3.0500 - 2.7700 1.00 3411 163 0.2590 0.3142 REMARK 3 5 2.7700 - 2.5700 1.00 3397 170 0.2598 0.2596 REMARK 3 6 2.5700 - 2.4200 1.00 3348 187 0.2480 0.2873 REMARK 3 7 2.4200 - 2.3000 1.00 3379 188 0.2626 0.3034 REMARK 3 8 2.3000 - 2.2000 1.00 3361 163 0.2488 0.2829 REMARK 3 9 2.2000 - 2.1100 1.00 3359 195 0.2632 0.3011 REMARK 3 10 2.1100 - 2.0400 1.00 3318 165 0.2672 0.2863 REMARK 3 11 2.0400 - 1.9800 1.00 3376 165 0.2726 0.2924 REMARK 3 12 1.9800 - 1.9200 1.00 3345 173 0.2762 0.2990 REMARK 3 13 1.9200 - 1.8700 1.00 3309 199 0.2724 0.3306 REMARK 3 14 1.8700 - 1.8300 1.00 3333 179 0.2877 0.2932 REMARK 3 15 1.8300 - 1.7800 1.00 3368 152 0.3003 0.3688 REMARK 3 16 1.7800 - 1.7500 0.99 3261 172 0.3177 0.3385 REMARK 3 17 1.7500 - 1.7100 0.87 2870 171 0.3413 0.3797 REMARK 3 18 1.7100 - 1.6800 0.51 1725 78 0.3431 0.4253 REMARK 3 19 1.6800 - 1.6500 0.33 1092 56 0.3508 0.3790 REMARK 3 20 1.6500 - 1.6200 0.21 687 43 0.3721 0.3363 REMARK 3 21 1.6200 - 1.5900 0.14 465 29 0.3989 0.2957 REMARK 3 22 1.5900 - 1.5700 0.06 202 12 0.4061 0.4311 REMARK 3 23 1.5700 - 1.5500 0.02 57 1 0.4877 0.6849 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YT7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292108175. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64377 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 74.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.54200 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HY9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG2000 MME, 0.1M HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.50750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.72250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.55150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.72250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.50750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.55150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 221 REMARK 465 LYS A 222 REMARK 465 THR A 223 REMARK 465 HIS A 224 REMARK 465 THR A 225 REMARK 465 CYS A 226 REMARK 465 PRO A 227 REMARK 465 PRO A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 ALA A 231 REMARK 465 PRO A 232 REMARK 465 GLU A 233 REMARK 465 LEU A 234 REMARK 465 LEU A 235 REMARK 465 GLY A 236 REMARK 465 PRO A 445 REMARK 465 GLY A 446 REMARK 465 LYS A 447 REMARK 465 GLY A 448 REMARK 465 GLY A 449 REMARK 465 GLY A 450 REMARK 465 GLY A 451 REMARK 465 SER A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 HIS A 457 REMARK 465 HIS A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 465 ASP B 221 REMARK 465 LYS B 222 REMARK 465 THR B 223 REMARK 465 HIS B 224 REMARK 465 THR B 225 REMARK 465 CYS B 226 REMARK 465 PRO B 227 REMARK 465 PRO B 228 REMARK 465 CYS B 229 REMARK 465 PRO B 230 REMARK 465 ALA B 231 REMARK 465 PRO B 232 REMARK 465 GLU B 233 REMARK 465 LEU B 234 REMARK 465 LEU B 235 REMARK 465 GLY B 236 REMARK 465 PRO B 445 REMARK 465 GLY B 446 REMARK 465 LYS B 447 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 286 NZ LYS B 288 1.90 REMARK 500 O HOH A 630 O HOH A 683 1.99 REMARK 500 OE2 GLU A 380 O HOH A 601 2.03 REMARK 500 NZ LYS B 290 O HOH B 602 2.09 REMARK 500 OE1 GLU A 380 O HOH A 602 2.12 REMARK 500 O HOH A 651 O HOH A 681 2.17 REMARK 500 ND2 ASN A 389 O HOH A 604 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 601 O HOH B 665 3555 2.02 REMARK 500 ND2 ASN A 384 O3 NAG D 5 3555 2.13 REMARK 500 O HOH A 656 O HOH B 674 1455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 416 CB ARG B 416 CG -0.221 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 272 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 GLU A 294 OE1 - CD - OE2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ASP A 356 OD1 - CG - OD2 ANGL. DEV. = -19.2 DEGREES REMARK 500 ASP A 356 CB - CG - OD1 ANGL. DEV. = 20.6 DEGREES REMARK 500 ASP A 356 CB - CG - OD2 ANGL. DEV. = -18.6 DEGREES REMARK 500 LYS A 360 CB - CG - CD ANGL. DEV. = -16.7 DEGREES REMARK 500 GLN A 418 CA - CB - CG ANGL. DEV. = 20.7 DEGREES REMARK 500 GLU B 269 OE1 - CD - OE2 ANGL. DEV. = -51.2 DEGREES REMARK 500 GLU B 269 CG - CD - OE1 ANGL. DEV. = 46.9 DEGREES REMARK 500 GLU B 269 CG - CD - OE2 ANGL. DEV. = -24.1 DEGREES REMARK 500 TYR B 296 CB - CG - CD2 ANGL. DEV. = 3.7 DEGREES REMARK 500 TYR B 296 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ILE B 336 CG1 - CB - CG2 ANGL. DEV. = -19.7 DEGREES REMARK 500 ARG B 355 CD - NE - CZ ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG B 355 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 GLU B 357 OE1 - CD - OE2 ANGL. DEV. = -38.1 DEGREES REMARK 500 GLU B 357 CG - CD - OE1 ANGL. DEV. = 38.8 DEGREES REMARK 500 GLU B 357 CG - CD - OE2 ANGL. DEV. = -25.9 DEGREES REMARK 500 ARG B 416 CG - CD - NE ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG B 416 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 416 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 GLN B 419 CA - CB - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 GLN B 419 OE1 - CD - NE2 ANGL. DEV. = -21.9 DEGREES REMARK 500 GLN B 419 CG - CD - OE1 ANGL. DEV. = 37.2 DEGREES REMARK 500 GLN B 419 CG - CD - NE2 ANGL. DEV. = -41.5 DEGREES REMARK 500 LEU B 443 CD1 - CG - CD2 ANGL. DEV. = -24.1 DEGREES REMARK 500 LEU B 443 CB - CG - CD1 ANGL. DEV. = 34.1 DEGREES REMARK 500 LEU B 443 CB - CG - CD2 ANGL. DEV. = -36.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 270 68.19 -151.33 REMARK 500 SER A 298 -16.23 69.37 REMARK 500 ARG A 301 112.21 -170.31 REMARK 500 ALA A 327 1.06 -63.94 REMARK 500 ASP A 356 -48.05 -16.92 REMARK 500 LEU A 358 3.29 -62.72 REMARK 500 LYS A 360 -167.84 -109.27 REMARK 500 GLU B 269 -79.83 10.47 REMARK 500 TYR B 296 -13.57 -46.08 REMARK 500 THR B 359 56.08 -115.28 REMARK 500 ASN B 361 -49.76 92.77 REMARK 500 GLN B 419 -38.84 15.12 REMARK 500 LEU B 443 119.26 -37.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B 268 GLU B 269 141.57 REMARK 500 GLN B 418 GLN B 419 120.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 294 0.10 SIDE CHAIN REMARK 500 ASP A 356 0.13 SIDE CHAIN REMARK 500 ARG B 355 0.15 SIDE CHAIN REMARK 500 GLU B 357 0.11 SIDE CHAIN REMARK 500 ARG B 416 0.08 SIDE CHAIN REMARK 500 GLN B 419 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6YSC RELATED DB: PDB DBREF 6YT7 A 221 447 UNP P0DOX5 IGG1_HUMAN 223 449 DBREF 6YT7 B 221 447 UNP P01857 IGHG1_HUMAN 104 330 SEQADV 6YT7 TRP A 366 UNP P0DOX5 THR 368 ENGINEERED MUTATION SEQADV 6YT7 GLU A 370 UNP P0DOX5 LYS 372 ENGINEERED MUTATION SEQADV 6YT7 GLY A 448 UNP P0DOX5 EXPRESSION TAG SEQADV 6YT7 GLY A 449 UNP P0DOX5 EXPRESSION TAG SEQADV 6YT7 GLY A 450 UNP P0DOX5 EXPRESSION TAG SEQADV 6YT7 GLY A 451 UNP P0DOX5 EXPRESSION TAG SEQADV 6YT7 SER A 452 UNP P0DOX5 EXPRESSION TAG SEQADV 6YT7 HIS A 453 UNP P0DOX5 EXPRESSION TAG SEQADV 6YT7 HIS A 454 UNP P0DOX5 EXPRESSION TAG SEQADV 6YT7 HIS A 455 UNP P0DOX5 EXPRESSION TAG SEQADV 6YT7 HIS A 456 UNP P0DOX5 EXPRESSION TAG SEQADV 6YT7 HIS A 457 UNP P0DOX5 EXPRESSION TAG SEQADV 6YT7 HIS A 458 UNP P0DOX5 EXPRESSION TAG SEQADV 6YT7 HIS A 459 UNP P0DOX5 EXPRESSION TAG SEQADV 6YT7 HIS A 460 UNP P0DOX5 EXPRESSION TAG SEQADV 6YT7 CYS B 349 UNP P01857 TYR 232 ENGINEERED MUTATION SEQADV 6YT7 SER B 366 UNP P01857 THR 249 ENGINEERED MUTATION SEQADV 6YT7 ALA B 368 UNP P01857 LEU 251 ENGINEERED MUTATION SEQADV 6YT7 VAL B 407 UNP P01857 TYR 290 ENGINEERED MUTATION SEQRES 1 A 240 ASP LYS THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU SEQRES 2 A 240 LEU LEU GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS SEQRES 3 A 240 PRO LYS ASP THR LEU MET ILE SER ARG THR PRO GLU VAL SEQRES 4 A 240 THR CYS VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU SEQRES 5 A 240 VAL LYS PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS SEQRES 6 A 240 ASN ALA LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER SEQRES 7 A 240 THR TYR ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN SEQRES 8 A 240 ASP TRP LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER SEQRES 9 A 240 ASN LYS ALA LEU PRO ALA PRO ILE GLU LYS THR ILE SER SEQRES 10 A 240 LYS ALA LYS GLY GLN PRO ARG GLU PRO GLN VAL TYR THR SEQRES 11 A 240 LEU PRO PRO SER ARG ASP GLU LEU THR LYS ASN GLN VAL SEQRES 12 A 240 SER LEU TRP CYS LEU VAL GLU GLY PHE TYR PRO SER ASP SEQRES 13 A 240 ILE ALA VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN SEQRES 14 A 240 ASN TYR LYS THR THR PRO PRO VAL LEU ASP SER ASP GLY SEQRES 15 A 240 SER PHE PHE LEU TYR SER LYS LEU THR VAL ASP LYS SER SEQRES 16 A 240 ARG TRP GLN GLN GLY ASN VAL PHE SER CYS SER VAL MET SEQRES 17 A 240 HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SER LEU SEQRES 18 A 240 SER LEU SER PRO GLY LYS GLY GLY GLY GLY SER HIS HIS SEQRES 19 A 240 HIS HIS HIS HIS HIS HIS SEQRES 1 B 227 ASP LYS THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU SEQRES 2 B 227 LEU LEU GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS SEQRES 3 B 227 PRO LYS ASP THR LEU MET ILE SER ARG THR PRO GLU VAL SEQRES 4 B 227 THR CYS VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU SEQRES 5 B 227 VAL LYS PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS SEQRES 6 B 227 ASN ALA LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER SEQRES 7 B 227 THR TYR ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN SEQRES 8 B 227 ASP TRP LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER SEQRES 9 B 227 ASN LYS ALA LEU PRO ALA PRO ILE GLU LYS THR ILE SER SEQRES 10 B 227 LYS ALA LYS GLY GLN PRO ARG GLU PRO GLN VAL CYS THR SEQRES 11 B 227 LEU PRO PRO SER ARG ASP GLU LEU THR LYS ASN GLN VAL SEQRES 12 B 227 SER LEU SER CYS ALA VAL LYS GLY PHE TYR PRO SER ASP SEQRES 13 B 227 ILE ALA VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN SEQRES 14 B 227 ASN TYR LYS THR THR PRO PRO VAL LEU ASP SER ASP GLY SEQRES 15 B 227 SER PHE PHE LEU VAL SER LYS LEU THR VAL ASP LYS SER SEQRES 16 B 227 ARG TRP GLN GLN GLY ASN VAL PHE SER CYS SER VAL MET SEQRES 17 B 227 HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SER LEU SEQRES 18 B 227 SER LEU SER PRO GLY LYS HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET GAL C 6 11 HET MAN C 7 11 HET FUC C 8 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET GAL D 6 11 HET MAN D 7 11 HET FUC D 8 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 HOH *205(H2 O) HELIX 1 AA1 LYS A 246 MET A 252 1 7 HELIX 2 AA2 LEU A 309 ASN A 315 1 7 HELIX 3 AA3 SER A 354 LYS A 360 5 7 HELIX 4 AA4 LYS A 414 GLN A 419 1 6 HELIX 5 AA5 LEU A 432 ASN A 434 5 3 HELIX 6 AA6 LYS B 246 MET B 252 1 7 HELIX 7 AA7 LEU B 309 ASN B 315 1 7 HELIX 8 AA8 SER B 354 LYS B 360 5 7 HELIX 9 AA9 LYS B 414 GLN B 419 1 6 HELIX 10 AB1 LEU B 432 ASN B 434 5 3 SHEET 1 AA1 4 SER A 239 PHE A 243 0 SHEET 2 AA1 4 GLU A 258 VAL A 264 -1 O VAL A 264 N SER A 239 SHEET 3 AA1 4 ARG A 301 THR A 307 -1 O SER A 304 N CYS A 261 SHEET 4 AA1 4 LYS A 288 LYS A 290 -1 N LYS A 288 O VAL A 305 SHEET 1 AA2 4 VAL A 282 VAL A 284 0 SHEET 2 AA2 4 VAL A 273 VAL A 279 -1 N VAL A 279 O VAL A 282 SHEET 3 AA2 4 TYR A 319 ASN A 325 -1 O SER A 324 N LYS A 274 SHEET 4 AA2 4 ILE A 332 ILE A 336 -1 O LYS A 334 N CYS A 321 SHEET 1 AA3 4 GLN A 347 LEU A 351 0 SHEET 2 AA3 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA3 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 AA3 4 TYR A 391 THR A 393 -1 N LYS A 392 O LYS A 409 SHEET 1 AA4 4 GLN A 347 LEU A 351 0 SHEET 2 AA4 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA4 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 AA4 4 VAL A 397 LEU A 398 -1 N VAL A 397 O PHE A 405 SHEET 1 AA5 4 GLN A 386 PRO A 387 0 SHEET 2 AA5 4 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 AA5 4 PHE A 423 MET A 428 -1 O SER A 426 N GLU A 380 SHEET 4 AA5 4 TYR A 436 LEU A 441 -1 O THR A 437 N VAL A 427 SHEET 1 AA6 4 SER B 239 PHE B 243 0 SHEET 2 AA6 4 GLU B 258 VAL B 266 -1 O THR B 260 N PHE B 243 SHEET 3 AA6 4 TYR B 300 THR B 307 -1 O SER B 304 N CYS B 261 SHEET 4 AA6 4 LYS B 288 THR B 289 -1 N LYS B 288 O VAL B 305 SHEET 1 AA7 4 SER B 239 PHE B 243 0 SHEET 2 AA7 4 GLU B 258 VAL B 266 -1 O THR B 260 N PHE B 243 SHEET 3 AA7 4 TYR B 300 THR B 307 -1 O SER B 304 N CYS B 261 SHEET 4 AA7 4 GLU B 293 GLU B 294 -1 N GLU B 293 O ARG B 301 SHEET 1 AA8 4 VAL B 282 VAL B 284 0 SHEET 2 AA8 4 LYS B 274 VAL B 279 -1 N VAL B 279 O VAL B 282 SHEET 3 AA8 4 TYR B 319 SER B 324 -1 O LYS B 322 N ASN B 276 SHEET 4 AA8 4 ILE B 332 ILE B 336 -1 O LYS B 334 N CYS B 321 SHEET 1 AA9 4 GLN B 347 LEU B 351 0 SHEET 2 AA9 4 GLN B 362 PHE B 372 -1 O SER B 366 N LEU B 351 SHEET 3 AA9 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 AA9 4 TYR B 391 THR B 393 -1 N LYS B 392 O LYS B 409 SHEET 1 AB1 4 GLN B 347 LEU B 351 0 SHEET 2 AB1 4 GLN B 362 PHE B 372 -1 O SER B 366 N LEU B 351 SHEET 3 AB1 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 AB1 4 VAL B 397 LEU B 398 -1 N VAL B 397 O PHE B 405 SHEET 1 AB2 4 GLN B 386 PRO B 387 0 SHEET 2 AB2 4 ALA B 378 SER B 383 -1 N SER B 383 O GLN B 386 SHEET 3 AB2 4 PHE B 423 MET B 428 -1 O SER B 426 N GLU B 380 SHEET 4 AB2 4 TYR B 436 LEU B 441 -1 O LYS B 439 N CYS B 425 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.04 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.00 SSBOND 3 CYS B 261 CYS B 321 1555 1555 2.05 SSBOND 4 CYS B 367 CYS B 425 1555 1555 2.02 LINK ND2 ASN A 297 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 297 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O6 NAG C 1 C1 FUC C 8 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.46 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 7 1555 1555 1.45 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.44 LINK O4 NAG C 5 C1 GAL C 6 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O6 NAG D 1 C1 FUC D 8 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.43 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 7 1555 1555 1.45 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.44 LINK O4 NAG D 5 C1 GAL D 6 1555 1555 1.44 CISPEP 1 TYR A 373 PRO A 374 0 0.13 CISPEP 2 TYR A 373 PRO A 374 0 -2.75 CISPEP 3 TYR B 373 PRO B 374 0 -3.41 CRYST1 49.015 75.103 149.445 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020402 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013315 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006691 0.00000