HEADER TRANSFERASE 27-APR-20 6YUS TITLE CAPSULE O-ACETYLTRANSFERASE OF NEISSERIA MENINGITIDIS SEROGROUP A TITLE 2 H228A MUTANT IN COMPLEX WITH COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SACC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS SEROGROUP A; SOURCE 3 ORGANISM_TAXID: 65699; SOURCE 4 GENE: SACC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS O-ACETYLTRANSFERASE, A/B HYDROLASE FOLD, SERINE TRANSFERASE, KEYWDS 2 CATALYTIC TRIAD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.T.CRAMER,T.FIEBIG,R.FEDOROV,M.MUEHLENHOFF REVDAT 4 23-OCT-24 6YUS 1 REMARK REVDAT 3 24-JAN-24 6YUS 1 REMARK REVDAT 2 14-OCT-20 6YUS 1 JRNL REVDAT 1 19-AUG-20 6YUS 0 JRNL AUTH T.FIEBIG,J.T.CRAMER,A.BETHE,P.BARUCH,U.CURTH,J.I.FUHRING, JRNL AUTH 2 F.F.R.BUETTNER,U.VOGEL,M.SCHUBERT,R.FEDOROV,M.MUHLENHOFF JRNL TITL STRUCTURAL AND MECHANISTIC BASIS OF CAPSULE O-ACETYLATION IN JRNL TITL 2 NEISSERIA MENINGITIDIS SEROGROUP A. JRNL REF NAT COMMUN V. 11 4723 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32948778 JRNL DOI 10.1038/S41467-020-18464-Y REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 44759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1600 - 5.0400 1.00 2930 155 0.1748 0.2357 REMARK 3 2 5.0400 - 4.0000 1.00 2807 148 0.1628 0.1790 REMARK 3 3 4.0000 - 3.4900 1.00 2748 143 0.1822 0.2516 REMARK 3 4 3.4900 - 3.1700 1.00 2725 144 0.2136 0.2420 REMARK 3 5 3.1700 - 2.9500 1.00 2732 144 0.2266 0.2628 REMARK 3 6 2.9500 - 2.7700 1.00 2710 142 0.2226 0.2805 REMARK 3 7 2.7700 - 2.6300 1.00 2699 143 0.2226 0.2627 REMARK 3 8 2.6300 - 2.5200 1.00 2702 142 0.2246 0.2853 REMARK 3 9 2.5200 - 2.4200 1.00 2711 143 0.2333 0.2524 REMARK 3 10 2.4200 - 2.3400 1.00 2673 140 0.2392 0.2667 REMARK 3 11 2.3400 - 2.2700 1.00 2696 142 0.2516 0.3131 REMARK 3 12 2.2700 - 2.2000 1.00 2663 140 0.2798 0.2737 REMARK 3 13 2.2000 - 2.1400 1.00 2665 141 0.3086 0.3352 REMARK 3 14 2.1400 - 2.0900 1.00 2701 141 0.3365 0.3270 REMARK 3 15 2.0900 - 2.0400 0.96 2575 137 0.3875 0.4026 REMARK 3 16 2.0400 - 2.0000 0.67 1783 94 0.4323 0.4361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.324 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.646 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4062 REMARK 3 ANGLE : 1.140 5519 REMARK 3 CHIRALITY : 0.062 623 REMARK 3 PLANARITY : 0.006 682 REMARK 3 DIHEDRAL : 17.663 1441 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4078 28.2896 -22.2268 REMARK 3 T TENSOR REMARK 3 T11: 0.7249 T22: 1.2838 REMARK 3 T33: 1.0398 T12: 0.3315 REMARK 3 T13: -0.1260 T23: -0.4386 REMARK 3 L TENSOR REMARK 3 L11: 5.8983 L22: 5.1465 REMARK 3 L33: 2.2839 L12: -0.7588 REMARK 3 L13: -3.2704 L23: 0.4993 REMARK 3 S TENSOR REMARK 3 S11: 0.3836 S12: 1.3951 S13: -1.4011 REMARK 3 S21: -0.3835 S22: 0.6501 S23: -0.8445 REMARK 3 S31: 1.7779 S32: 3.1516 S33: -1.0822 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6527 34.7544 -29.5663 REMARK 3 T TENSOR REMARK 3 T11: 0.6395 T22: 1.0952 REMARK 3 T33: 0.6759 T12: 0.0077 REMARK 3 T13: -0.0689 T23: -0.3956 REMARK 3 L TENSOR REMARK 3 L11: 1.9016 L22: 3.1293 REMARK 3 L33: 4.2736 L12: -1.3459 REMARK 3 L13: 0.1298 L23: 0.1177 REMARK 3 S TENSOR REMARK 3 S11: 0.1015 S12: 0.9819 S13: -0.5879 REMARK 3 S21: -0.5277 S22: 0.3309 S23: -0.2267 REMARK 3 S31: 0.4917 S32: 0.9760 S33: -0.4709 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7716 38.0871 -30.4224 REMARK 3 T TENSOR REMARK 3 T11: 0.6717 T22: 1.2989 REMARK 3 T33: 0.6562 T12: -0.0027 REMARK 3 T13: -0.0474 T23: -0.4061 REMARK 3 L TENSOR REMARK 3 L11: 3.2870 L22: 1.9170 REMARK 3 L33: 7.6244 L12: -1.8243 REMARK 3 L13: 0.8909 L23: 2.1326 REMARK 3 S TENSOR REMARK 3 S11: -0.1229 S12: 1.5818 S13: -0.9120 REMARK 3 S21: -0.6514 S22: 0.5415 S23: -0.6761 REMARK 3 S31: -0.0617 S32: 1.6307 S33: -0.3731 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1791 38.5120 -26.4576 REMARK 3 T TENSOR REMARK 3 T11: 0.4427 T22: 0.5374 REMARK 3 T33: 0.4093 T12: -0.0010 REMARK 3 T13: -0.0836 T23: -0.1196 REMARK 3 L TENSOR REMARK 3 L11: 5.4870 L22: 4.3581 REMARK 3 L33: 6.1130 L12: 1.3621 REMARK 3 L13: 0.8193 L23: 0.1590 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: 0.7373 S13: -0.4109 REMARK 3 S21: -0.2127 S22: 0.5144 S23: -0.1364 REMARK 3 S31: 0.3690 S32: 0.6658 S33: -0.4500 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3323 27.6752 -25.7743 REMARK 3 T TENSOR REMARK 3 T11: 0.8680 T22: 0.5819 REMARK 3 T33: 0.8727 T12: -0.1963 REMARK 3 T13: -0.2053 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 7.3094 L22: 4.4304 REMARK 3 L33: 9.8681 L12: -3.7602 REMARK 3 L13: -0.4645 L23: 3.6211 REMARK 3 S TENSOR REMARK 3 S11: -0.1431 S12: 0.2360 S13: -1.7303 REMARK 3 S21: 0.2469 S22: -0.0169 S23: 0.8953 REMARK 3 S31: 1.1861 S32: -0.6210 S33: -0.0192 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 173 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6742 48.7124 -33.2823 REMARK 3 T TENSOR REMARK 3 T11: 0.5772 T22: 0.6753 REMARK 3 T33: 0.4722 T12: -0.2030 REMARK 3 T13: -0.1310 T23: 0.0746 REMARK 3 L TENSOR REMARK 3 L11: 3.6874 L22: 3.5815 REMARK 3 L33: 5.2966 L12: -0.2549 REMARK 3 L13: 0.3927 L23: -0.9244 REMARK 3 S TENSOR REMARK 3 S11: -0.3848 S12: 1.1101 S13: 0.0131 REMARK 3 S21: -0.6539 S22: 0.4505 S23: 0.2218 REMARK 3 S31: -0.3099 S32: 0.0804 S33: -0.0992 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0097 47.4797 -41.2967 REMARK 3 T TENSOR REMARK 3 T11: 0.7879 T22: 1.3434 REMARK 3 T33: 0.4794 T12: -0.4050 REMARK 3 T13: 0.0743 T23: -0.0836 REMARK 3 L TENSOR REMARK 3 L11: 8.0889 L22: 9.8147 REMARK 3 L33: 9.4170 L12: -4.2122 REMARK 3 L13: 2.5377 L23: 0.7013 REMARK 3 S TENSOR REMARK 3 S11: -0.3211 S12: 1.2319 S13: 0.0212 REMARK 3 S21: -1.1785 S22: 0.5790 S23: -0.5437 REMARK 3 S31: -0.4254 S32: 1.6637 S33: -0.3259 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5012 42.5927 -0.1229 REMARK 3 T TENSOR REMARK 3 T11: 0.4480 T22: 0.5771 REMARK 3 T33: 0.5441 T12: 0.0625 REMARK 3 T13: -0.1822 T23: -0.1584 REMARK 3 L TENSOR REMARK 3 L11: 1.9045 L22: 2.4497 REMARK 3 L33: 5.2397 L12: 0.7166 REMARK 3 L13: -3.1376 L23: -0.3815 REMARK 3 S TENSOR REMARK 3 S11: 0.2129 S12: 0.0324 S13: -0.2262 REMARK 3 S21: 0.2847 S22: -0.1369 S23: -0.2390 REMARK 3 S31: -0.0798 S32: 0.1161 S33: -0.0900 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2537 37.7361 2.9294 REMARK 3 T TENSOR REMARK 3 T11: 0.6205 T22: 0.8218 REMARK 3 T33: 0.7205 T12: 0.0270 REMARK 3 T13: -0.2204 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 7.6923 L22: 4.9482 REMARK 3 L33: 2.0422 L12: -4.0846 REMARK 3 L13: -8.6949 L23: 3.0470 REMARK 3 S TENSOR REMARK 3 S11: 0.3850 S12: -0.5346 S13: 0.4397 REMARK 3 S21: 0.6463 S22: 0.0046 S23: -0.8149 REMARK 3 S31: 0.0895 S32: 1.2648 S33: -0.4338 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8405 31.6686 0.2651 REMARK 3 T TENSOR REMARK 3 T11: 0.6156 T22: 0.5403 REMARK 3 T33: 0.6094 T12: 0.0217 REMARK 3 T13: -0.0985 T23: -0.1931 REMARK 3 L TENSOR REMARK 3 L11: 4.1362 L22: 2.0535 REMARK 3 L33: 2.8901 L12: 1.3737 REMARK 3 L13: -1.1038 L23: -0.2337 REMARK 3 S TENSOR REMARK 3 S11: -0.0525 S12: 0.2746 S13: -0.4732 REMARK 3 S21: 0.1729 S22: -0.1550 S23: 0.1195 REMARK 3 S31: 0.4820 S32: -0.2408 S33: 0.2077 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 173 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7778 18.3154 -2.5550 REMARK 3 T TENSOR REMARK 3 T11: 0.9716 T22: 0.5418 REMARK 3 T33: 0.8611 T12: 0.0032 REMARK 3 T13: -0.0416 T23: -0.1753 REMARK 3 L TENSOR REMARK 3 L11: 9.0862 L22: 8.3862 REMARK 3 L33: 5.5862 L12: -6.8565 REMARK 3 L13: -4.8493 L23: 3.5544 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: 1.0925 S13: -1.4682 REMARK 3 S21: -0.4107 S22: -0.7356 S23: 0.2522 REMARK 3 S31: 0.9522 S32: -0.7323 S33: 0.8728 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 189 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1102 22.0890 12.5097 REMARK 3 T TENSOR REMARK 3 T11: 0.8212 T22: 0.5468 REMARK 3 T33: 0.6426 T12: 0.1238 REMARK 3 T13: -0.0120 T23: 0.0971 REMARK 3 L TENSOR REMARK 3 L11: 6.0076 L22: 6.0580 REMARK 3 L33: 6.9140 L12: 0.1730 REMARK 3 L13: -2.5215 L23: -0.9894 REMARK 3 S TENSOR REMARK 3 S11: -0.4308 S12: -0.5013 S13: -0.8691 REMARK 3 S21: 0.7676 S22: 0.0522 S23: -0.3112 REMARK 3 S31: 1.3362 S32: 0.4323 S33: 0.3331 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YUS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292108329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976247 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45806 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 49.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 23.50 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : 4.50100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6YUQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NATIVE H228A MUTANT CSAC CRYSTALLIZED REMARK 280 IN SITTING DROP SETUPS AT CONCENTRATIONS OF 18 MG/ML. FINE REMARK 280 SCREENS AROUND INITIAL SCREENING CONDITIONS RESULTED IN MANY REMARK 280 ISOMORPHOUS CRYSTALS. MOTHER LIQUOR CONTAINED 50 MM HEPES PH 7.0, REMARK 280 100 MM HEPES PH 7.6, 100 MM NACL, 5 MM MGCL2, 1 MM EDTA, AND 31- REMARK 280 42% PEG200., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.38000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 68.37000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 68.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.69000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 68.37000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 68.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.07000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 68.37000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.37000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.69000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 68.37000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.37000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.07000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.38000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -35.38000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 246 REMARK 465 ILE A 247 REMARK 465 LEU A 248 REMARK 465 GLU A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 ASN B 246 REMARK 465 ILE B 247 REMARK 465 LEU B 248 REMARK 465 GLU B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 163 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 GLU A 231 CG CD OE1 OE2 REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 ASN B 59 CG OD1 ND2 REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 LYS B 196 CG CD CE NZ REMARK 470 LYS B 220 CG CD CE NZ REMARK 470 LYS B 222 CG CD CE NZ REMARK 470 GLU B 238 CG CD OE1 OE2 REMARK 470 LYS B 241 CG CD CE NZ REMARK 470 ILE B 244 CG1 CG2 CD1 REMARK 470 GLN B 245 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 12 -137.58 50.32 REMARK 500 GLU A 31 -50.61 75.80 REMARK 500 TYR A 51 36.63 72.93 REMARK 500 ALA A 75 46.31 -86.90 REMARK 500 OAS A 114 -129.46 63.06 REMARK 500 ALA A 136 65.21 39.16 REMARK 500 SER A 149 108.64 -167.03 REMARK 500 GLU B 31 -49.35 74.81 REMARK 500 ASP B 74 67.97 -155.85 REMARK 500 OAS B 114 -105.20 -149.21 REMARK 500 SER B 149 110.46 -164.98 REMARK 500 SER B 184 -37.93 64.38 REMARK 500 CYS B 194 140.13 -171.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 303 DBREF 6YUS A 1 247 UNP O68216 O68216_NEIMD 1 247 DBREF 6YUS B 1 247 UNP O68216 O68216_NEIMD 1 247 SEQADV 6YUS ALA A 228 UNP O68216 HIS 228 ENGINEERED MUTATION SEQADV 6YUS LEU A 248 UNP O68216 EXPRESSION TAG SEQADV 6YUS GLU A 249 UNP O68216 EXPRESSION TAG SEQADV 6YUS HIS A 250 UNP O68216 EXPRESSION TAG SEQADV 6YUS HIS A 251 UNP O68216 EXPRESSION TAG SEQADV 6YUS HIS A 252 UNP O68216 EXPRESSION TAG SEQADV 6YUS HIS A 253 UNP O68216 EXPRESSION TAG SEQADV 6YUS HIS A 254 UNP O68216 EXPRESSION TAG SEQADV 6YUS HIS A 255 UNP O68216 EXPRESSION TAG SEQADV 6YUS ALA B 228 UNP O68216 HIS 228 ENGINEERED MUTATION SEQADV 6YUS LEU B 248 UNP O68216 EXPRESSION TAG SEQADV 6YUS GLU B 249 UNP O68216 EXPRESSION TAG SEQADV 6YUS HIS B 250 UNP O68216 EXPRESSION TAG SEQADV 6YUS HIS B 251 UNP O68216 EXPRESSION TAG SEQADV 6YUS HIS B 252 UNP O68216 EXPRESSION TAG SEQADV 6YUS HIS B 253 UNP O68216 EXPRESSION TAG SEQADV 6YUS HIS B 254 UNP O68216 EXPRESSION TAG SEQADV 6YUS HIS B 255 UNP O68216 EXPRESSION TAG SEQRES 1 A 255 MET LEU SER ASN LEU LYS THR GLY ASN ASN ILE LEU GLY SEQRES 2 A 255 LEU PRO GLU PHE GLU LEU ASN GLY CYS ARG PHE LEU TYR SEQRES 3 A 255 LYS LYS GLY ILE GLU LYS THR ILE ILE THR PHE SER ALA SEQRES 4 A 255 PHE PRO PRO LYS ASP ILE ALA GLN LYS TYR ASN TYR ILE SEQRES 5 A 255 LYS ASP PHE LEU SER SER ASN TYR THR PHE LEU ALA PHE SEQRES 6 A 255 LEU ASP THR LYS TYR PRO GLU ASP ASP ALA ARG GLY THR SEQRES 7 A 255 TYR TYR ILE THR ASN GLU LEU ASP ASN GLY TYR LEU GLN SEQRES 8 A 255 THR ILE HIS CYS ILE ILE GLN LEU LEU SER ASN THR ASN SEQRES 9 A 255 GLN GLU ASP THR TYR LEU LEU GLY SER OAS LYS GLY GLY SEQRES 10 A 255 VAL GLY ALA LEU LEU LEU GLY LEU THR TYR ASN TYR PRO SEQRES 11 A 255 ASN ILE ILE ILE ASN ALA PRO GLN ALA LYS LEU ALA ASP SEQRES 12 A 255 TYR ILE LYS THR ARG SER LYS THR ILE LEU SER TYR MET SEQRES 13 A 255 LEU GLY THR SER LYS ARG PHE GLN ASP ILE ASN TYR ASP SEQRES 14 A 255 TYR ILE ASN ASP PHE LEU LEU SER LYS ILE LYS THR CYS SEQRES 15 A 255 ASP SER SER LEU LYS TRP ASN ILE HIS ILE THR CYS GLY SEQRES 16 A 255 LYS ASP ASP SER TYR HIS LEU ASN GLU LEU GLU ILE LEU SEQRES 17 A 255 LYS ASN GLU PHE ASN ILE LYS ALA ILE THR ILE LYS THR SEQRES 18 A 255 LYS LEU ILE SER GLY GLY ALA ASP ASN GLU ALA ILE ALA SEQRES 19 A 255 HIS TYR ARG GLU TYR PHE LYS THR ILE ILE GLN ASN ILE SEQRES 20 A 255 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 255 MET LEU SER ASN LEU LYS THR GLY ASN ASN ILE LEU GLY SEQRES 2 B 255 LEU PRO GLU PHE GLU LEU ASN GLY CYS ARG PHE LEU TYR SEQRES 3 B 255 LYS LYS GLY ILE GLU LYS THR ILE ILE THR PHE SER ALA SEQRES 4 B 255 PHE PRO PRO LYS ASP ILE ALA GLN LYS TYR ASN TYR ILE SEQRES 5 B 255 LYS ASP PHE LEU SER SER ASN TYR THR PHE LEU ALA PHE SEQRES 6 B 255 LEU ASP THR LYS TYR PRO GLU ASP ASP ALA ARG GLY THR SEQRES 7 B 255 TYR TYR ILE THR ASN GLU LEU ASP ASN GLY TYR LEU GLN SEQRES 8 B 255 THR ILE HIS CYS ILE ILE GLN LEU LEU SER ASN THR ASN SEQRES 9 B 255 GLN GLU ASP THR TYR LEU LEU GLY SER OAS LYS GLY GLY SEQRES 10 B 255 VAL GLY ALA LEU LEU LEU GLY LEU THR TYR ASN TYR PRO SEQRES 11 B 255 ASN ILE ILE ILE ASN ALA PRO GLN ALA LYS LEU ALA ASP SEQRES 12 B 255 TYR ILE LYS THR ARG SER LYS THR ILE LEU SER TYR MET SEQRES 13 B 255 LEU GLY THR SER LYS ARG PHE GLN ASP ILE ASN TYR ASP SEQRES 14 B 255 TYR ILE ASN ASP PHE LEU LEU SER LYS ILE LYS THR CYS SEQRES 15 B 255 ASP SER SER LEU LYS TRP ASN ILE HIS ILE THR CYS GLY SEQRES 16 B 255 LYS ASP ASP SER TYR HIS LEU ASN GLU LEU GLU ILE LEU SEQRES 17 B 255 LYS ASN GLU PHE ASN ILE LYS ALA ILE THR ILE LYS THR SEQRES 18 B 255 LYS LEU ILE SER GLY GLY ALA ASP ASN GLU ALA ILE ALA SEQRES 19 B 255 HIS TYR ARG GLU TYR PHE LYS THR ILE ILE GLN ASN ILE SEQRES 20 B 255 LEU GLU HIS HIS HIS HIS HIS HIS MODRES 6YUS OAS A 114 SER MODIFIED RESIDUE MODRES 6YUS OAS B 114 SER MODIFIED RESIDUE HET OAS A 114 9 HET OAS B 114 9 HET COA A 301 48 HET PEG A 302 7 HET COA B 301 48 HET EDO B 302 4 HET PEG B 303 7 HETNAM OAS O-ACETYLSERINE HETNAM COA COENZYME A HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 OAS 2(C5 H9 N O4) FORMUL 3 COA 2(C21 H36 N7 O16 P3 S) FORMUL 4 PEG 2(C4 H10 O3) FORMUL 6 EDO C2 H6 O2 FORMUL 8 HOH *40(H2 O) HELIX 1 AA1 MET A 1 ASN A 4 5 4 HELIX 2 AA2 ILE A 52 LEU A 56 5 5 HELIX 3 AA3 ASN A 87 SER A 101 1 15 HELIX 4 AA4 ASN A 104 GLU A 106 5 3 HELIX 5 AA5 OAS A 114 ASN A 128 1 15 HELIX 6 AA6 LYS A 140 LYS A 146 1 7 HELIX 7 AA7 SER A 149 GLY A 158 1 10 HELIX 8 AA8 SER A 160 ARG A 162 5 3 HELIX 9 AA9 PHE A 163 ASP A 173 1 11 HELIX 10 AB1 ASP A 173 THR A 181 1 9 HELIX 11 AB2 ASP A 198 LYS A 215 1 18 HELIX 12 AB3 ASP A 229 GLN A 245 1 17 HELIX 13 AB4 MET B 1 ASN B 4 5 4 HELIX 14 AB5 ILE B 52 LEU B 56 5 5 HELIX 15 AB6 PRO B 71 ALA B 75 5 5 HELIX 16 AB7 ASN B 87 SER B 101 1 15 HELIX 17 AB8 ASN B 104 GLU B 106 5 3 HELIX 18 AB9 OAS B 114 ASN B 128 1 15 HELIX 19 AC1 LYS B 140 SER B 149 1 10 HELIX 20 AC2 SER B 149 GLY B 158 1 10 HELIX 21 AC3 SER B 160 ASP B 173 1 14 HELIX 22 AC4 ASP B 173 THR B 181 1 9 HELIX 23 AC5 ASP B 198 LYS B 215 1 18 HELIX 24 AC6 ASP B 229 GLN B 245 1 17 SHEET 1 AA1 9 LYS A 6 ILE A 11 0 SHEET 2 AA1 9 LEU A 14 LEU A 19 -1 O GLU A 16 N ASN A 9 SHEET 3 AA1 9 CYS A 22 LYS A 27 -1 O PHE A 24 N PHE A 17 SHEET 4 AA1 9 THR A 61 PHE A 65 -1 O ALA A 64 N LEU A 25 SHEET 5 AA1 9 THR A 33 PHE A 37 1 N ILE A 34 O THR A 61 SHEET 6 AA1 9 THR A 108 SER A 113 1 O LEU A 111 N ILE A 35 SHEET 7 AA1 9 ASN A 131 ASN A 135 1 O ILE A 133 N LEU A 110 SHEET 8 AA1 9 ASN A 189 GLY A 195 1 O HIS A 191 N ILE A 132 SHEET 9 AA1 9 LYS A 220 ILE A 224 1 O LYS A 220 N ILE A 190 SHEET 1 AA2 9 LYS B 6 ILE B 11 0 SHEET 2 AA2 9 LEU B 14 LEU B 19 -1 O LEU B 14 N ILE B 11 SHEET 3 AA2 9 CYS B 22 LYS B 27 -1 O PHE B 24 N PHE B 17 SHEET 4 AA2 9 THR B 61 PHE B 65 -1 O PHE B 62 N LYS B 27 SHEET 5 AA2 9 THR B 33 PHE B 37 1 N THR B 36 O PHE B 65 SHEET 6 AA2 9 THR B 108 GLY B 112 1 O TYR B 109 N ILE B 35 SHEET 7 AA2 9 ASN B 131 ASN B 135 1 O ILE B 133 N LEU B 110 SHEET 8 AA2 9 ASN B 189 GLY B 195 1 O HIS B 191 N ILE B 132 SHEET 9 AA2 9 LYS B 220 ILE B 224 1 O LYS B 220 N ILE B 190 LINK C SER A 113 N OAS A 114 1555 1555 1.33 LINK C OAS A 114 N LYS A 115 1555 1555 1.34 LINK C SER B 113 N OAS B 114 1555 1555 1.31 LINK C OAS B 114 N LYS B 115 1555 1555 1.33 CISPEP 1 TYR A 70 PRO A 71 0 -5.81 CISPEP 2 TYR B 70 PRO B 71 0 5.63 SITE 1 AC1 12 ILE A 11 GLN A 47 LYS A 48 TYR A 49 SITE 2 AC1 12 ASN A 50 TYR A 51 ILE A 52 LYS A 53 SITE 3 AC1 12 SER A 113 OAS A 114 ILE A 233 ARG A 237 SITE 1 AC2 3 LYS A 28 ASN A 210 EDO B 302 SITE 1 AC3 14 ILE B 11 PHE B 40 GLN B 47 LYS B 48 SITE 2 AC3 14 TYR B 49 ASN B 50 TYR B 51 ILE B 52 SITE 3 AC3 14 LYS B 53 SER B 113 OAS B 114 ILE B 233 SITE 4 AC3 14 ARG B 237 HOH B 411 SITE 1 AC4 5 ASN A 210 PEG A 302 TYR B 26 LYS B 28 SITE 2 AC4 5 LEU B 100 SITE 1 AC5 5 ASN B 83 GLU B 84 LEU B 85 TYR B 155 SITE 2 AC5 5 MET B 156 CRYST1 136.740 136.740 70.760 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007313 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014132 0.00000