HEADER CELL INVASION 28-APR-20 6YVA TITLE PLPRO-C111S WITH MISG15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICASE POLYPROTEIN 1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PP1A,ORF1A POLYPROTEIN; COMPND 5 EC: 3.4.19.12,3.4.22.-,3.4.22.69; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UBIQUITIN-LIKE PROTEIN ISG15; COMPND 9 CHAIN: C; COMPND 10 SYNONYM: INTERFERON-INDUCED 15 KDA PROTEIN,INTERFERON-INDUCED 17 KDA COMPND 11 PROTEIN,IP17,UBIQUITIN CROSS-REACTIVE PROTEIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: ISG15, G1P2, UCRP; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEUBIQUITINASE, PAPAIN-LIKE-PROTEASE, SARS-COV-2, ISG15, COMPLEX, KEYWDS 2 CELL INVASION EXPDTA X-RAY DIFFRACTION AUTHOR D.SHIN,I.DIKIC REVDAT 6 24-JAN-24 6YVA 1 REMARK REVDAT 5 11-AUG-21 6YVA 1 JRNL REVDAT 4 09-DEC-20 6YVA 1 JRNL REVDAT 3 12-AUG-20 6YVA 1 JRNL REVDAT 2 15-JUL-20 6YVA 1 COMPND SOURCE REMARK HET REVDAT 2 2 1 HETNAM FORMUL HELIX SHEET REVDAT 2 3 1 ATOM REVDAT 1 13-MAY-20 6YVA 0 JRNL AUTH D.SHIN,R.MUKHERJEE,D.GREWE,D.BOJKOVA,K.BAEK,A.BHATTACHARYA, JRNL AUTH 2 L.SCHULZ,M.WIDERA,A.R.MEHDIPOUR,G.TASCHER,P.P.GEURINK, JRNL AUTH 3 A.WILHELM,G.J.VAN DER HEDEN VAN NOORT,H.OVAA,S.MULLER, JRNL AUTH 4 K.P.KNOBELOCH,K.RAJALINGAM,B.A.SCHULMAN,J.CINATL,G.HUMMER, JRNL AUTH 5 S.CIESEK,I.DIKIC JRNL TITL PAPAIN-LIKE PROTEASE REGULATES SARS-COV-2 VIRAL SPREAD AND JRNL TITL 2 INNATE IMMUNITY. JRNL REF NATURE V. 587 657 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 32726803 JRNL DOI 10.1038/S41586-020-2601-5 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.SHIN,R.MUKHERJEE,D.GREWE,D.BOJKOVA,K.BAEK,A.BHATTACHARYA, REMARK 1 AUTH 2 L.SCHULZ,M.WIDERA,A.R.MEHDIPOUR,G.TASCHER,P.P.GEURINK, REMARK 1 AUTH 3 G.J.VAN DER HEDEN VAN NOORT,H.OVAA,K.P.KNOBELOCH, REMARK 1 AUTH 4 K.RAJALINGAM,B.A.SCHULMAN,J.CINATL,G.HUMMER,S.CIESEK,I.DIKIC REMARK 1 TITL INHIBITION OF PAPAIN-LIKE PROTEASE PLPRO BLOCKS SARS-COV-2 REMARK 1 TITL 2 SPREAD AND PROMOTES ANTI-VIRAL IMMUNITY REMARK 1 REF NATURE 2020 REMARK 1 REFN ESSN 1476-4687 REMARK 1 PMID 32726803 REMARK 1 DOI 10.21203/RS.3.RS-27134/V1 REMARK 2 REMARK 2 RESOLUTION. 3.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 10590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3400 - 5.0500 1.00 2653 145 0.2401 0.2641 REMARK 3 2 5.0500 - 4.0100 1.00 2506 126 0.2254 0.2431 REMARK 3 3 4.0100 - 3.5100 1.00 2484 119 0.2704 0.3777 REMARK 3 4 3.5000 - 3.1800 0.99 2432 125 0.3157 0.3953 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.514 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 88.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3456 REMARK 3 ANGLE : 0.634 4697 REMARK 3 CHIRALITY : 0.042 535 REMARK 3 PLANARITY : 0.004 602 REMARK 3 DIHEDRAL : 12.400 472 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 38.6251 -33.7661 2.6210 REMARK 3 T TENSOR REMARK 3 T11: 0.6580 T22: 0.6468 REMARK 3 T33: 0.5032 T12: -0.1145 REMARK 3 T13: -0.0884 T23: -0.0544 REMARK 3 L TENSOR REMARK 3 L11: 0.6699 L22: 3.7894 REMARK 3 L33: 1.6972 L12: 0.7898 REMARK 3 L13: -0.6517 L23: -0.5090 REMARK 3 S TENSOR REMARK 3 S11: 0.4366 S12: -0.2592 S13: -0.0327 REMARK 3 S21: 0.5519 S22: -0.5704 S23: -0.2288 REMARK 3 S31: -0.1696 S32: 0.2022 S33: 0.1315 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292108360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10590 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.180 REMARK 200 RESOLUTION RANGE LOW (A) : 45.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.05751 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.56890 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.17.1_3660 REMARK 200 STARTING MODEL: 6W9C, 5TLA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG4450, 100 MM BIS-TRIS PROPANE REMARK 280 PH 6.5, 200 MM POTASSIUM THIOCYANATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.75533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.87767 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.75533 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.87767 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.75533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 27.87767 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 55.75533 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.87767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 185 REMARK 465 ASN A 186 REMARK 465 VAL A 187 REMARK 465 VAL A 188 REMARK 465 CYS A 189 REMARK 465 LYS A 190 REMARK 465 THR A 191 REMARK 465 CYS A 192 REMARK 465 GLY A 193 REMARK 465 GLN A 194 REMARK 465 GLN A 195 REMARK 465 GLY A 219 REMARK 465 VAL A 220 REMARK 465 GLN A 221 REMARK 465 ILE A 222 REMARK 465 PRO A 223 REMARK 465 CYS A 224 REMARK 465 THR A 225 REMARK 465 CYS A 226 REMARK 465 GLY A 227 REMARK 465 LYS A 228 REMARK 465 GLN A 229 REMARK 465 ALA A 230 REMARK 465 THR A 231 REMARK 465 LYS A 232 REMARK 465 TYR A 233 REMARK 465 TYR A 310 REMARK 465 THR A 311 REMARK 465 THR A 312 REMARK 465 THR A 313 REMARK 465 ILE A 314 REMARK 465 LYS A 315 REMARK 465 GLY C 156 REMARK 465 GLY C 157 REMARK 465 ASP C 158 REMARK 465 GLN C 159 REMARK 465 CYS C 160 REMARK 465 ALA C 161 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 24 OG REMARK 470 MET A 25 CG SD CE REMARK 470 GLN A 29 CG CD OE1 NE2 REMARK 470 VAL A 41 CG1 CG2 REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 ASN A 48 CG OD1 ND2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 GLN A 196 CG CD OE1 NE2 REMARK 470 THR A 197 OG1 CG2 REMARK 470 THR A 198 OG1 CG2 REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 MET A 208 CG SD CE REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 GLN A 215 CG CD OE1 NE2 REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 LEU A 234 CG CD1 CD2 REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ASN A 267 CG OD1 ND2 REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 SER A 309 OG REMARK 470 GLU C 78 CG CD OE1 OE2 REMARK 470 ARG C 88 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 90 CG ND1 CD2 CE1 NE2 REMARK 470 GLN C 111 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 133 O HOH A 401 2.05 REMARK 500 NH1 ARG A 82 OD1 ASN A 156 2.16 REMARK 500 OG1 THR C 24 OE1 GLU C 27 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 59 97.20 -62.77 REMARK 500 SER A 103 -165.65 -113.61 REMARK 500 ASN A 156 18.29 59.28 REMARK 500 TYR A 207 106.81 -167.13 REMARK 500 GLU A 214 -9.35 -56.87 REMARK 500 ASN A 267 -167.56 -105.67 REMARK 500 GLU A 280 -47.02 72.98 REMARK 500 PRO A 299 72.13 -69.92 REMARK 500 THR A 301 -33.04 -135.94 REMARK 500 MET C 9 54.55 -118.88 REMARK 500 SER C 22 33.94 -92.23 REMARK 500 SER C 66 40.50 -84.56 REMARK 500 ASN C 75 52.32 -109.13 REMARK 500 SER C 77 -30.58 -134.91 REMARK 500 REMARK 500 REMARK: NULL DBREF 6YVA A 1 315 UNP P0DTC1 R1A_SARS2 1564 1878 DBREF 6YVA C 1 161 UNP Q64339 ISG15_MOUSE 1 161 SEQADV 6YVA SER A 111 UNP P0DTC1 CYS 1674 ENGINEERED MUTATION SEQRES 1 A 315 GLU VAL ARG THR ILE LYS VAL PHE THR THR VAL ASP ASN SEQRES 2 A 315 ILE ASN LEU HIS THR GLN VAL VAL ASP MET SER MET THR SEQRES 3 A 315 TYR GLY GLN GLN PHE GLY PRO THR TYR LEU ASP GLY ALA SEQRES 4 A 315 ASP VAL THR LYS ILE LYS PRO HIS ASN SER HIS GLU GLY SEQRES 5 A 315 LYS THR PHE TYR VAL LEU PRO ASN ASP ASP THR LEU ARG SEQRES 6 A 315 VAL GLU ALA PHE GLU TYR TYR HIS THR THR ASP PRO SER SEQRES 7 A 315 PHE LEU GLY ARG TYR MET SER ALA LEU ASN HIS THR LYS SEQRES 8 A 315 LYS TRP LYS TYR PRO GLN VAL ASN GLY LEU THR SER ILE SEQRES 9 A 315 LYS TRP ALA ASP ASN ASN SER TYR LEU ALA THR ALA LEU SEQRES 10 A 315 LEU THR LEU GLN GLN ILE GLU LEU LYS PHE ASN PRO PRO SEQRES 11 A 315 ALA LEU GLN ASP ALA TYR TYR ARG ALA ARG ALA GLY GLU SEQRES 12 A 315 ALA ALA ASN PHE CYS ALA LEU ILE LEU ALA TYR CYS ASN SEQRES 13 A 315 LYS THR VAL GLY GLU LEU GLY ASP VAL ARG GLU THR MET SEQRES 14 A 315 SER TYR LEU PHE GLN HIS ALA ASN LEU ASP SER CYS LYS SEQRES 15 A 315 ARG VAL LEU ASN VAL VAL CYS LYS THR CYS GLY GLN GLN SEQRES 16 A 315 GLN THR THR LEU LYS GLY VAL GLU ALA VAL MET TYR MET SEQRES 17 A 315 GLY THR LEU SER TYR GLU GLN PHE LYS LYS GLY VAL GLN SEQRES 18 A 315 ILE PRO CYS THR CYS GLY LYS GLN ALA THR LYS TYR LEU SEQRES 19 A 315 VAL GLN GLN GLU SER PRO PHE VAL MET MET SER ALA PRO SEQRES 20 A 315 PRO ALA GLN TYR GLU LEU LYS HIS GLY THR PHE THR CYS SEQRES 21 A 315 ALA SER GLU TYR THR GLY ASN TYR GLN CYS GLY HIS TYR SEQRES 22 A 315 LYS HIS ILE THR SER LYS GLU THR LEU TYR CYS ILE ASP SEQRES 23 A 315 GLY ALA LEU LEU THR LYS SER SER GLU TYR LYS GLY PRO SEQRES 24 A 315 ILE THR ASP VAL PHE TYR LYS GLU ASN SER TYR THR THR SEQRES 25 A 315 THR ILE LYS SEQRES 1 C 161 MET ALA TRP ASP LEU LYS VAL LYS MET LEU GLY GLY ASN SEQRES 2 C 161 ASP PHE LEU VAL SER VAL THR ASN SER MET THR VAL SER SEQRES 3 C 161 GLU LEU LYS LYS GLN ILE ALA GLN LYS ILE GLY VAL PRO SEQRES 4 C 161 ALA PHE GLN GLN ARG LEU ALA HIS GLN THR ALA VAL LEU SEQRES 5 C 161 GLN ASP GLY LEU THR LEU SER SER LEU GLY LEU GLY PRO SEQRES 6 C 161 SER SER THR VAL MET LEU VAL VAL GLN ASN CYS SER GLU SEQRES 7 C 161 PRO LEU SER ILE LEU VAL ARG ASN GLU ARG GLY HIS SER SEQRES 8 C 161 ASN ILE TYR GLU VAL PHE LEU THR GLN THR VAL ASP THR SEQRES 9 C 161 LEU LYS LYS LYS VAL SER GLN ARG GLU GLN VAL HIS GLU SEQRES 10 C 161 ASP GLN PHE TRP LEU SER PHE GLU GLY ARG PRO MET GLU SEQRES 11 C 161 ASP LYS GLU LEU LEU GLY GLU TYR GLY LEU LYS PRO GLN SEQRES 12 C 161 CYS THR VAL ILE LYS HIS LEU ARG LEU ARG GLY GLY GLY SEQRES 13 C 161 GLY ASP GLN CYS ALA HET ZN C 201 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *23(H2 O) HELIX 1 AA1 ASP A 61 HIS A 73 1 13 HELIX 2 AA2 SER A 78 LYS A 91 1 14 HELIX 3 AA3 ASN A 110 GLN A 121 1 12 HELIX 4 AA4 PRO A 129 ALA A 141 1 13 HELIX 5 AA5 ALA A 144 CYS A 155 1 12 HELIX 6 AA6 ASP A 164 HIS A 175 1 12 HELIX 7 AA7 VAL A 202 VAL A 205 5 4 HELIX 8 AA8 THR C 24 GLY C 37 1 14 HELIX 9 AA9 PRO C 39 PHE C 41 5 3 HELIX 10 AB1 THR C 101 GLN C 114 1 14 HELIX 11 AB2 HIS C 116 PHE C 120 5 5 HELIX 12 AB3 LEU C 135 GLY C 139 5 5 SHEET 1 AA1 5 HIS A 17 VAL A 21 0 SHEET 2 AA1 5 ILE A 5 THR A 10 -1 N VAL A 7 O GLN A 19 SHEET 3 AA1 5 THR A 54 TYR A 56 1 O PHE A 55 N PHE A 8 SHEET 4 AA1 5 TYR A 35 LEU A 36 -1 N TYR A 35 O TYR A 56 SHEET 5 AA1 5 ALA A 39 ASP A 40 -1 O ALA A 39 N LEU A 36 SHEET 1 AA2 2 GLN A 97 VAL A 98 0 SHEET 2 AA2 2 LEU A 101 THR A 102 -1 O LEU A 101 N VAL A 98 SHEET 1 AA3 3 LEU A 199 LYS A 200 0 SHEET 2 AA3 3 LYS A 182 ARG A 183 -1 N ARG A 183 O LEU A 199 SHEET 3 AA3 3 GLN A 237 GLU A 238 -1 O GLU A 238 N LYS A 182 SHEET 1 AA4 6 PHE A 241 LEU A 253 0 SHEET 2 AA4 6 TYR A 296 LYS A 306 -1 O TYR A 305 N VAL A 242 SHEET 3 AA4 6 CYS A 260 GLY A 266 -1 N CYS A 260 O PHE A 304 SHEET 4 AA4 6 GLY A 271 THR A 277 -1 O ILE A 276 N ALA A 261 SHEET 5 AA4 6 TYR A 283 ASP A 286 -1 O ILE A 285 N HIS A 275 SHEET 6 AA4 6 LEU A 289 THR A 291 -1 O LEU A 289 N ASP A 286 SHEET 1 AA5 4 ASP C 14 THR C 20 0 SHEET 2 AA5 4 ALA C 2 LYS C 8 -1 N LEU C 5 O VAL C 17 SHEET 3 AA5 4 THR C 68 VAL C 73 1 O LEU C 71 N LYS C 8 SHEET 4 AA5 4 GLN C 43 ALA C 46 -1 N ALA C 46 O MET C 70 SHEET 1 AA6 5 SER C 91 VAL C 96 0 SHEET 2 AA6 5 LEU C 80 ARG C 85 -1 N ILE C 82 O TYR C 94 SHEET 3 AA6 5 THR C 145 HIS C 149 1 O VAL C 146 N ARG C 85 SHEET 4 AA6 5 TRP C 121 PHE C 124 -1 N TRP C 121 O HIS C 149 SHEET 5 AA6 5 ARG C 127 PRO C 128 -1 O ARG C 127 N PHE C 124 CRYST1 157.047 157.047 83.633 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006368 0.003676 0.000000 0.00000 SCALE2 0.000000 0.007353 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011957 0.00000