HEADER OXIDOREDUCTASE 28-APR-20 6YVX TITLE HIF PROLYL HYDROXYLASE 2 (PHD2/ EGLN1) IN COMPLEX WITH BICYCLIC BB-287 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2,HPH-2,PROLYL COMPND 5 HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2,PHD2,SM-20; COMPND 6 EC: 1.14.11.29; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: CATALYTIC DOMAIN (RESIDUES 181-426) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGLN1, C1ORF12, PNAS-118, PNAS-137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS OXIDOREDUCTASE, NON-HEME DIOXYGENASE, IRON, 2-OXOGLUTARATE, HYPOXIA- KEYWDS 2 INDUCIBLE FACTOR, HIF, HIF PROLYL HYDROXYLASE DOMAIN 2, PHD2, EGLN1, KEYWDS 3 OXYGENASE, HYPOXIA, DNA-BINDING, METAL-BINDING, TRANSCRIPTION, KEYWDS 4 HELIX-LOOP-HELIX-BETA, DSBH, FACIAL TRIAD, CYTOPLASM, KEYWDS 5 TRANSCRIPTION/EPIGENETIC REGULATION, SIGNALING, DEVELOPMENT, CELL KEYWDS 6 STRUCTURE, BETA-HYDROXYLATION, TRANSCRIPTION ACTIVATOR/INHIBITOR, KEYWDS 7 UBL CONJUGATION, POLYMORPHISM, VITAMIN C, ZINC-FINGER, FAMILIAL KEYWDS 8 ERYTHROCYTOSIS, BREAST CANCER, TRANSCRIPTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOWDHURY,B.BANERJI,C.J.SCHOFIELD REVDAT 3 06-NOV-24 6YVX 1 REMARK REVDAT 2 24-JAN-24 6YVX 1 REMARK REVDAT 1 30-DEC-20 6YVX 0 JRNL AUTH R.CHOWDHURY,M.I.ABBOUD,T.E.MCALLISTER,B.BANERJI,B.BHUSHAN, JRNL AUTH 2 J.L.SORENSEN,A.KAWAMURA,C.J.SCHOFIELD JRNL TITL USE OF CYCLIC PEPTIDES TO INDUCE CRYSTALLIZATION: CASE STUDY JRNL TITL 2 WITH PROLYL HYDROXYLASE DOMAIN 2. JRNL REF SCI REP V. 10 21964 2020 JRNL REFN ESSN 2045-2322 JRNL PMID 33319810 JRNL DOI 10.1038/S41598-020-76307-8 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.CHOWDHURY,J.I.CANDELA-LENA,M.C.CHAN,D.J.GREENALD,K.K.YEOH, REMARK 1 AUTH 2 Y.M.TIAN,M.A.MCDONOUGH,A.TUMBER,N.R.ROSE,A.CONEJO-GARCIA, REMARK 1 AUTH 3 M.DEMETRIADES,S.MATHAVAN,A.KAWAMURA,M.K.LEE,F.VAN EEDEN, REMARK 1 AUTH 4 C.W.PUGH,P.J.RATCLIFFE,C.J.SCHOFIELD REMARK 1 TITL SELECTIVE SMALL MOLECULE PROBES FOR THE HYPOXIA INDUCIBLE REMARK 1 TITL 2 FACTOR (HIF) PROLYL HYDROXYLASES. REMARK 1 REF ACS CHEM. BIOL. V. 8 1488 2013 REMARK 1 REFN ESSN 1554-8937 REMARK 1 DOI 10.1021/CB400088Q REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.290 REMARK 3 FREE R VALUE TEST SET COUNT : 1342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6080 - 3.8774 1.00 2492 146 0.1595 0.1929 REMARK 3 2 3.8774 - 3.0778 1.00 2425 135 0.1454 0.1738 REMARK 3 3 3.0778 - 2.6887 1.00 2418 137 0.1580 0.1673 REMARK 3 4 2.6887 - 2.4429 1.00 2391 128 0.1642 0.2093 REMARK 3 5 2.4429 - 2.2678 1.00 2432 122 0.1483 0.1886 REMARK 3 6 2.2678 - 2.1341 1.00 2407 126 0.1458 0.1666 REMARK 3 7 2.1341 - 2.0272 1.00 2367 146 0.1658 0.2052 REMARK 3 8 2.0272 - 1.9390 1.00 2367 138 0.1768 0.2014 REMARK 3 9 1.9390 - 1.8643 1.00 2361 143 0.2081 0.2330 REMARK 3 10 1.8643 - 1.8000 0.99 2351 121 0.2431 0.2682 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 59.10 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1844 REMARK 3 ANGLE : 1.202 2505 REMARK 3 CHIRALITY : 0.083 266 REMARK 3 PLANARITY : 0.009 331 REMARK 3 DIHEDRAL : 16.645 1086 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7682 5.3546 3.2985 REMARK 3 T TENSOR REMARK 3 T11: 0.5368 T22: 0.3028 REMARK 3 T33: 0.4396 T12: -0.0246 REMARK 3 T13: 0.0085 T23: 0.1115 REMARK 3 L TENSOR REMARK 3 L11: 0.8972 L22: 1.2104 REMARK 3 L33: 0.1886 L12: -0.3751 REMARK 3 L13: -0.0533 L23: 0.2333 REMARK 3 S TENSOR REMARK 3 S11: -0.1755 S12: -0.1034 S13: -0.6629 REMARK 3 S21: 0.4255 S22: 0.0730 S23: 0.3788 REMARK 3 S31: 0.9273 S32: -0.2522 S33: -0.0712 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0781 23.9382 14.4367 REMARK 3 T TENSOR REMARK 3 T11: 0.4239 T22: 0.5993 REMARK 3 T33: 0.3244 T12: -0.0089 REMARK 3 T13: 0.1020 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 4.6476 L22: 2.1640 REMARK 3 L33: 2.2497 L12: 3.0931 REMARK 3 L13: -0.2352 L23: 0.4236 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: -0.6376 S13: 0.2453 REMARK 3 S21: 0.4328 S22: -0.0766 S23: 0.5993 REMARK 3 S31: 0.0922 S32: -0.7975 S33: 0.1366 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0132 38.7635 2.0196 REMARK 3 T TENSOR REMARK 3 T11: 0.6263 T22: 0.3653 REMARK 3 T33: 0.5954 T12: -0.0380 REMARK 3 T13: -0.0492 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 5.7796 L22: 6.2966 REMARK 3 L33: 4.4623 L12: 0.3368 REMARK 3 L13: -0.3597 L23: -0.5718 REMARK 3 S TENSOR REMARK 3 S11: -0.5508 S12: 0.1462 S13: 0.6950 REMARK 3 S21: -0.3619 S22: -0.2036 S23: -0.1328 REMARK 3 S31: -1.1646 S32: 0.5577 S33: 0.1692 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7166 33.1737 7.8841 REMARK 3 T TENSOR REMARK 3 T11: 0.4397 T22: 0.3320 REMARK 3 T33: 0.4100 T12: -0.0163 REMARK 3 T13: -0.0749 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 4.4189 L22: 3.7306 REMARK 3 L33: 6.0562 L12: 0.5067 REMARK 3 L13: 0.0264 L23: -0.2634 REMARK 3 S TENSOR REMARK 3 S11: -0.2579 S12: -0.1721 S13: 0.6701 REMARK 3 S21: 0.2464 S22: 0.0577 S23: 0.2906 REMARK 3 S31: -0.8701 S32: -0.0401 S33: 0.2376 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2748 18.4433 5.2089 REMARK 3 T TENSOR REMARK 3 T11: 0.2566 T22: 0.2400 REMARK 3 T33: 0.2802 T12: -0.0151 REMARK 3 T13: -0.0392 T23: 0.0753 REMARK 3 L TENSOR REMARK 3 L11: 3.7360 L22: 2.9521 REMARK 3 L33: 2.7550 L12: -0.6528 REMARK 3 L13: 0.7335 L23: 0.4368 REMARK 3 S TENSOR REMARK 3 S11: -0.0669 S12: -0.1209 S13: -0.0611 REMARK 3 S21: 0.3159 S22: 0.0347 S23: -0.2888 REMARK 3 S31: 0.1289 S32: 0.0913 S33: 0.0191 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0864 18.5885 -6.8829 REMARK 3 T TENSOR REMARK 3 T11: 0.2444 T22: 0.3273 REMARK 3 T33: 0.3160 T12: -0.0135 REMARK 3 T13: -0.0622 T23: 0.0643 REMARK 3 L TENSOR REMARK 3 L11: 3.5944 L22: 4.4065 REMARK 3 L33: 3.9592 L12: -0.3375 REMARK 3 L13: 0.6407 L23: 1.1206 REMARK 3 S TENSOR REMARK 3 S11: 0.1262 S12: 0.4319 S13: -0.4570 REMARK 3 S21: -0.3637 S22: -0.1261 S23: 0.4577 REMARK 3 S31: 0.2162 S32: -0.4691 S33: -0.0157 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 354 THROUGH 382 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0908 18.4699 -3.5568 REMARK 3 T TENSOR REMARK 3 T11: 0.2098 T22: 0.2534 REMARK 3 T33: 0.1990 T12: -0.0354 REMARK 3 T13: -0.0303 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 3.8959 L22: 3.8030 REMARK 3 L33: 2.3119 L12: -1.1223 REMARK 3 L13: -0.1540 L23: 0.6906 REMARK 3 S TENSOR REMARK 3 S11: 0.0605 S12: 0.1659 S13: -0.0264 REMARK 3 S21: -0.2339 S22: -0.0983 S23: 0.0842 REMARK 3 S31: 0.2183 S32: -0.2530 S33: 0.0312 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 383 THROUGH 398 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.2090 19.8916 4.3387 REMARK 3 T TENSOR REMARK 3 T11: 0.2102 T22: 0.2378 REMARK 3 T33: 0.3035 T12: 0.0090 REMARK 3 T13: -0.0577 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 2.5736 L22: 2.3056 REMARK 3 L33: 2.3366 L12: -1.5754 REMARK 3 L13: 1.9350 L23: -0.1743 REMARK 3 S TENSOR REMARK 3 S11: 0.0382 S12: -0.1827 S13: -0.3470 REMARK 3 S21: 0.0991 S22: 0.1292 S23: -0.2646 REMARK 3 S31: 0.1383 S32: 0.3216 S33: -0.1117 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 399 THROUGH 414 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.6766 29.9138 7.8721 REMARK 3 T TENSOR REMARK 3 T11: 0.4003 T22: 0.5575 REMARK 3 T33: 0.5339 T12: -0.0608 REMARK 3 T13: 0.1060 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.8871 L22: 8.4289 REMARK 3 L33: 2.2480 L12: 2.6526 REMARK 3 L13: 0.8933 L23: 2.1060 REMARK 3 S TENSOR REMARK 3 S11: -0.0768 S12: 0.0113 S13: 1.0095 REMARK 3 S21: 0.3486 S22: 0.4960 S23: 0.8713 REMARK 3 S31: -0.8861 S32: -0.0690 S33: 0.7822 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YVX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292108405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98000 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25415 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 95.217 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 1.31900 REMARK 200 R SYM FOR SHELL (I) : 1.31900 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2G19 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SAMPLE: (20 MG/ML PHD2 + 1 MM FESO4 + REMARK 280 2 MM COMPOUND); RESERVOIR: 1.6-2.0 M (NH4)2SO4, 2-8% DIOXANE, REMARK 280 0.1 M MES-NA PH 6.5, AND 1 MM FESO4; HANGING DROP VAPOUR REMARK 280 DIFFUSION, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.61050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.61050 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.61050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 HIS A 177 REMARK 465 MET A 178 REMARK 465 ALA A 179 REMARK 465 SER A 180 REMARK 465 PRO A 181 REMARK 465 LYS A 186 REMARK 465 PRO A 187 REMARK 465 LYS A 244 REMARK 465 SER A 245 REMARK 465 GLU A 407 REMARK 465 LYS A 408 REMARK 465 GLY A 409 REMARK 465 VAL A 410 REMARK 465 ASN A 415 REMARK 465 LYS A 416 REMARK 465 PRO A 417 REMARK 465 SER A 418 REMARK 465 ASP A 419 REMARK 465 SER A 420 REMARK 465 VAL A 421 REMARK 465 GLY A 422 REMARK 465 LYS A 423 REMARK 465 ASP A 424 REMARK 465 VAL A 425 REMARK 465 PHE A 426 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 182 CG OD1 ND2 REMARK 470 GLN A 184 CG CD OE1 NE2 REMARK 470 THR A 185 OG1 CG2 REMARK 470 LYS A 216 CD CE NZ REMARK 470 GLN A 220 CD OE1 NE2 REMARK 470 ASP A 246 CG OD1 OD2 REMARK 470 SER A 247 OG REMARK 470 SER A 248 OG REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 255 NZ REMARK 470 LYS A 291 CD CE NZ REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 LYS A 350 CE NZ REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 LYS A 400 CD CE NZ REMARK 470 VAL A 401 CG1 CG2 REMARK 470 LYS A 402 CD CE NZ REMARK 470 TYR A 403 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 404 CD1 CD2 REMARK 470 GLU A 413 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 197 -61.52 -128.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 ASP A 315 OD1 93.6 REMARK 620 3 HIS A 374 NE2 87.9 92.3 REMARK 620 4 2JP A 502 O2 92.1 174.0 89.9 REMARK 620 5 2JP A 502 N1 88.2 98.7 168.5 79.5 REMARK 620 6 HOH A 623 O 178.3 86.0 93.7 88.3 90.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2JP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BQW RELATED DB: PDB REMARK 900 RELATED ID: 4BQX RELATED DB: PDB REMARK 900 RELATED ID: 4BQY RELATED DB: PDB REMARK 900 RELATED ID: 5A3U RELATED DB: PDB DBREF 6YVX A 181 426 UNP Q9GZT9 EGLN1_HUMAN 181 426 SEQADV 6YVX GLY A 175 UNP Q9GZT9 EXPRESSION TAG SEQADV 6YVX SER A 176 UNP Q9GZT9 EXPRESSION TAG SEQADV 6YVX HIS A 177 UNP Q9GZT9 EXPRESSION TAG SEQADV 6YVX MET A 178 UNP Q9GZT9 EXPRESSION TAG SEQADV 6YVX ALA A 179 UNP Q9GZT9 EXPRESSION TAG SEQADV 6YVX SER A 180 UNP Q9GZT9 EXPRESSION TAG SEQRES 1 A 252 GLY SER HIS MET ALA SER PRO ASN GLY GLN THR LYS PRO SEQRES 2 A 252 LEU PRO ALA LEU LYS LEU ALA LEU GLU TYR ILE VAL PRO SEQRES 3 A 252 CYS MET ASN LYS HIS GLY ILE CYS VAL VAL ASP ASP PHE SEQRES 4 A 252 LEU GLY LYS GLU THR GLY GLN GLN ILE GLY ASP GLU VAL SEQRES 5 A 252 ARG ALA LEU HIS ASP THR GLY LYS PHE THR ASP GLY GLN SEQRES 6 A 252 LEU VAL SER GLN LYS SER ASP SER SER LYS ASP ILE ARG SEQRES 7 A 252 GLY ASP LYS ILE THR TRP ILE GLU GLY LYS GLU PRO GLY SEQRES 8 A 252 CYS GLU THR ILE GLY LEU LEU MET SER SER MET ASP ASP SEQRES 9 A 252 LEU ILE ARG HIS CYS ASN GLY LYS LEU GLY SER TYR LYS SEQRES 10 A 252 ILE ASN GLY ARG THR LYS ALA MET VAL ALA CYS TYR PRO SEQRES 11 A 252 GLY ASN GLY THR GLY TYR VAL ARG HIS VAL ASP ASN PRO SEQRES 12 A 252 ASN GLY ASP GLY ARG CYS VAL THR CYS ILE TYR TYR LEU SEQRES 13 A 252 ASN LYS ASP TRP ASP ALA LYS VAL SER GLY GLY ILE LEU SEQRES 14 A 252 ARG ILE PHE PRO GLU GLY LYS ALA GLN PHE ALA ASP ILE SEQRES 15 A 252 GLU PRO LYS PHE ASP ARG LEU LEU PHE PHE TRP SER ASP SEQRES 16 A 252 ARG ARG ASN PRO HIS GLU VAL GLN PRO ALA TYR ALA THR SEQRES 17 A 252 ARG TYR ALA ILE THR VAL TRP TYR PHE ASP ALA ASP GLU SEQRES 18 A 252 ARG ALA ARG ALA LYS VAL LYS TYR LEU THR GLY GLU LYS SEQRES 19 A 252 GLY VAL ARG VAL GLU LEU ASN LYS PRO SER ASP SER VAL SEQRES 20 A 252 GLY LYS ASP VAL PHE HET MN A 501 1 HET 2JP A 502 29 HET BCT A 503 5 HETNAM MN MANGANESE (II) ION HETNAM 2JP 4-(ISOQUINOLIN-3-YLAMINO)-4-OXOBUTANOIC ACID HETNAM BCT BICARBONATE ION FORMUL 2 MN MN 2+ FORMUL 3 2JP C13 H12 N2 O3 FORMUL 4 BCT C H O3 1- FORMUL 5 HOH *128(H2 O) HELIX 1 AA1 PRO A 189 TYR A 197 1 9 HELIX 2 AA2 TYR A 197 GLY A 206 1 10 HELIX 3 AA3 GLY A 215 THR A 232 1 18 HELIX 4 AA4 ASP A 246 ASP A 250 5 5 HELIX 5 AA5 CYS A 266 CYS A 283 1 18 HELIX 6 AA6 ASP A 335 GLY A 340 1 6 HELIX 7 AA7 ALA A 393 LEU A 404 1 12 SHEET 1 AA1 7 GLY A 183 GLN A 184 0 SHEET 2 AA1 7 ILE A 207 ASP A 211 1 O ASP A 211 N GLY A 183 SHEET 3 AA1 7 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 4 AA1 7 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 5 AA1 7 ARG A 383 ASP A 392 -1 O ILE A 386 N TYR A 328 SHEET 6 AA1 7 ALA A 298 TYR A 303 -1 N MET A 299 O THR A 387 SHEET 7 AA1 7 LYS A 255 ILE A 259 -1 N THR A 257 O VAL A 300 SHEET 1 AA2 6 GLY A 183 GLN A 184 0 SHEET 2 AA2 6 ILE A 207 ASP A 211 1 O ASP A 211 N GLY A 183 SHEET 3 AA2 6 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 4 AA2 6 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 5 AA2 6 ARG A 383 ASP A 392 -1 O ILE A 386 N TYR A 328 SHEET 6 AA2 6 ILE A 292 ARG A 295 -1 N GLY A 294 O PHE A 391 SHEET 1 AA3 2 LEU A 240 SER A 242 0 SHEET 2 AA3 2 ILE A 251 ARG A 252 -1 O ILE A 251 N VAL A 241 SHEET 1 AA4 4 TYR A 310 HIS A 313 0 SHEET 2 AA4 4 HIS A 374 VAL A 376 -1 O HIS A 374 N HIS A 313 SHEET 3 AA4 4 LEU A 343 ILE A 345 -1 N ARG A 344 O GLU A 375 SHEET 4 AA4 4 ALA A 354 ILE A 356 -1 O ILE A 356 N LEU A 343 SSBOND 1 CYS A 201 CYS A 208 1555 1555 2.10 LINK NE2 HIS A 313 MN MN A 501 1555 1555 2.22 LINK OD1 ASP A 315 MN MN A 501 1555 1555 2.18 LINK NE2 HIS A 374 MN MN A 501 1555 1555 2.17 LINK MN MN A 501 O2 2JP A 502 1555 1555 2.15 LINK MN MN A 501 N1 2JP A 502 1555 1555 2.14 LINK MN MN A 501 O HOH A 623 1555 1555 2.22 SITE 1 AC1 5 HIS A 313 ASP A 315 HIS A 374 2JP A 502 SITE 2 AC1 5 HOH A 623 SITE 1 AC2 17 MET A 299 TYR A 310 HIS A 313 ASP A 315 SITE 2 AC2 17 ILE A 327 TYR A 329 LEU A 343 HIS A 374 SITE 3 AC2 17 VAL A 376 ARG A 383 VAL A 401 MN A 501 SITE 4 AC2 17 HOH A 623 HOH A 626 HOH A 639 HOH A 643 SITE 5 AC2 17 HOH A 646 SITE 1 AC3 4 LYS A 262 ARG A 312 PRO A 373 HOH A 613 CRYST1 109.947 109.947 39.221 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009095 0.005251 0.000000 0.00000 SCALE2 0.000000 0.010502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025497 0.00000