HEADER MEMBRANE PROTEIN 01-MAY-20 6YXG TITLE CRYOGENIC HUMAN ADIPONECTIN RECEPTOR 2 (ADIPOR2) WITH TB-XO4 LIGAND TITLE 2 DETERMINED BY SERIAL CRYSTALLOGRAPHY (SSX) USING CRYSTALDIRECT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADIPONECTIN RECEPTOR PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROGESTIN AND ADIPOQ RECEPTOR FAMILY MEMBER 2,PROGESTIN AND COMPND 5 ADIPOQ RECEPTOR FAMILY MEMBER II; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: V REGION HEAVY AND LIGHT CHAINS; COMPND 9 CHAIN: H; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADIPOR2, PAQR2; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 14 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7227 KEYWDS ADIPONECTIN RECEPTOR, ADIPOR2, LIGAND SOAKING, SERIAL SYNCHROTRON KEYWDS 2 CRYSTALLOGRAPHY, SSX, CRYSTALDIRECT, LCP CRYSTALLIZATION, IN MESO, KEYWDS 3 MEMBRANE PROTEINS, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.D.HEALEY,S.BASU,A.S.HUMM,C.LEYRAT,F.DUPEUX,A.PICA,S.GRANIER, AUTHOR 2 J.A.MARQUEZ REVDAT 3 24-JAN-24 6YXG 1 REMARK REVDAT 2 17-NOV-21 6YXG 1 JRNL REMARK REVDAT 1 12-MAY-21 6YXG 0 JRNL AUTH R.D.HEALEY,S.BASU,A.S.HUMM,C.LEYRAT,X.CONG,J.GOLEBIOWSKI, JRNL AUTH 2 F.DUPEUX,A.PICA,S.GRANIER,J.A.MARQUEZ JRNL TITL AN AUTOMATED PLATFORM FOR STRUCTURAL ANALYSIS OF MEMBRANE JRNL TITL 2 PROTEINS THROUGH SERIAL CRYSTALLOGRAPHY. JRNL REF CELL REP METHODS V. 1 NONE 2021 JRNL REFN ISSN 2667-2375 JRNL PMID 34723237 JRNL DOI 10.1016/J.CRMETH.2021.100102 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (3-OCT-2019) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.690 REMARK 3 FREE R VALUE TEST SET COUNT : 971 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.10 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.06 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 342 REMARK 3 BIN R VALUE (WORKING SET) : 0.3466 REMARK 3 BIN FREE R VALUE : 0.5035 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.93 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 14 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4073 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 331 REMARK 3 SOLVENT ATOMS : 19 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.31930 REMARK 3 B22 (A**2) : 30.44490 REMARK 3 B33 (A**2) : -47.76420 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.430 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.377 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.810 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.831 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4524 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6058 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1606 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 758 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4495 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 536 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3750 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.32 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.61 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YXG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292107777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.72 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32012 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 34.82 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 OR 50 NL BOLUS OVERLAID WITH 600 NL REMARK 280 PRECIPITANT SOLUTION USING EITHER A MOSQUITO LCP ROBOT (SPT REMARK 280 LABTECH) IN CRYSTALDIRECT PLATE-2. THE CRYSTALLISATION CONDITION REMARK 280 IS MADE OF 42.3% PEG 400, 110 MM POTASSIUM CITRATE, 100 MM HEPES REMARK 280 PH 7.0. 30-150 NL OF TB-XO4 SOAKING SOLUTION WITH A FINAL CONC. REMARK 280 OF 5 - 25 MM WAS DELIVERED ONTO LCP CRYSTALLISATION DROP. REMARK 280 CRYSTALLISATION EXPERIMENTS WERE CARRIED OUT AT THE HTX FACILITY REMARK 280 OF EMBL GRENOBLE. LCP BOLUS WERE HARVESTED AUTOMATICALLY AT REMARK 280 CRYOGENIC CONDITION USING CRYSTALDIRECT TECHNOLOGY., LIPIDIC REMARK 280 CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.30500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.25500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.30500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.25500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 SER A 381 REMARK 465 GLU A 382 REMARK 465 GLU A 383 REMARK 465 ASP A 384 REMARK 465 ALA A 385 REMARK 465 LEU A 386 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 116 93.73 -67.88 REMARK 500 ASP A 117 -62.39 -101.14 REMARK 500 PHE A 140 33.90 -98.29 REMARK 500 ALA H 16 -169.77 -78.75 REMARK 500 THR H 30 4.51 -68.47 REMARK 500 ALA H 103 61.82 -57.04 REMARK 500 SER H 139 30.49 -74.59 REMARK 500 LEU H 186 -52.12 -123.40 REMARK 500 ALA H 190 -45.38 65.04 REMARK 500 SER H 216 86.95 48.61 REMARK 500 ASP H 221 3.00 -66.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 511 DISTANCE = 10.24 ANGSTROMS REMARK 525 HOH A 512 DISTANCE = 10.88 ANGSTROMS REMARK 525 HOH H 406 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH H 407 DISTANCE = 7.74 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 OLB A 404 REMARK 615 OLB A 408 REMARK 615 OLB A 411 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 202 NE2 REMARK 620 2 HIS A 348 NE2 86.4 REMARK 620 3 HIS A 352 NE2 79.8 91.2 REMARK 620 4 OLA A 402 O2 160.4 78.3 112.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7MT H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7MT H 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5LWY RELATED DB: PDB DBREF 6YXG A 100 386 UNP Q86V24 PAQR2_HUMAN 100 386 DBREF 6YXG H 1 246 PDB 6YXG 6YXG 1 246 SEQADV 6YXG GLY A -4 UNP Q86V24 EXPRESSION TAG SEQADV 6YXG GLY A -3 UNP Q86V24 EXPRESSION TAG SEQADV 6YXG SER A -2 UNP Q86V24 EXPRESSION TAG SEQADV 6YXG GLU A -1 UNP Q86V24 EXPRESSION TAG SEQADV 6YXG PHE A 0 UNP Q86V24 EXPRESSION TAG SEQRES 1 A 292 GLY GLY SER GLU PHE GLU GLY ARG TRP ARG VAL ILE PRO SEQRES 2 A 292 HIS ASP VAL LEU PRO ASP TRP LEU LYS ASP ASN ASP PHE SEQRES 3 A 292 LEU LEU HIS GLY HIS ARG PRO PRO MET PRO SER PHE ARG SEQRES 4 A 292 ALA CYS PHE LYS SER ILE PHE ARG ILE HIS THR GLU THR SEQRES 5 A 292 GLY ASN ILE TRP THR HIS LEU LEU GLY CYS VAL PHE PHE SEQRES 6 A 292 LEU CYS LEU GLY ILE PHE TYR MET PHE ARG PRO ASN ILE SEQRES 7 A 292 SER PHE VAL ALA PRO LEU GLN GLU LYS VAL VAL PHE GLY SEQRES 8 A 292 LEU PHE PHE LEU GLY ALA ILE LEU CYS LEU SER PHE SER SEQRES 9 A 292 TRP LEU PHE HIS THR VAL TYR CYS HIS SER GLU GLY VAL SEQRES 10 A 292 SER ARG LEU PHE SER LYS LEU ASP TYR SER GLY ILE ALA SEQRES 11 A 292 LEU LEU ILE MET GLY SER PHE VAL PRO TRP LEU TYR TYR SEQRES 12 A 292 SER PHE TYR CYS ASN PRO GLN PRO CYS PHE ILE TYR LEU SEQRES 13 A 292 ILE VAL ILE CYS VAL LEU GLY ILE ALA ALA ILE ILE VAL SEQRES 14 A 292 SER GLN TRP ASP MET PHE ALA THR PRO GLN TYR ARG GLY SEQRES 15 A 292 VAL ARG ALA GLY VAL PHE LEU GLY LEU GLY LEU SER GLY SEQRES 16 A 292 ILE ILE PRO THR LEU HIS TYR VAL ILE SER GLU GLY PHE SEQRES 17 A 292 LEU LYS ALA ALA THR ILE GLY GLN ILE GLY TRP LEU MET SEQRES 18 A 292 LEU MET ALA SER LEU TYR ILE THR GLY ALA ALA LEU TYR SEQRES 19 A 292 ALA ALA ARG ILE PRO GLU ARG PHE PHE PRO GLY LYS CYS SEQRES 20 A 292 ASP ILE TRP PHE HIS SER HIS GLN LEU PHE HIS ILE PHE SEQRES 21 A 292 VAL VAL ALA GLY ALA PHE VAL HIS PHE HIS GLY VAL SER SEQRES 22 A 292 ASN LEU GLN GLU PHE ARG PHE MET ILE GLY GLY GLY CYS SEQRES 23 A 292 SER GLU GLU ASP ALA LEU SEQRES 1 H 236 GLU VAL LEU LEU GLN GLN SER GLY PRO GLU LEU VAL LYS SEQRES 2 H 236 PRO GLY ALA SER VAL ARG ILE THR CYS LYS ALA SER GLY SEQRES 3 H 236 TYR THR PHE THR ASP PHE ASN MET ASP TRP VAL LYS GLN SEQRES 4 H 236 SER PRO GLY LYS SER LEU GLU TRP ILE GLY ASP PHE ASN SEQRES 5 H 236 PRO ASN SER GLY GLY SER ILE TYR ASN GLN LYS PHE LYS SEQRES 6 H 236 ASP LYS ALA THR PHE THR VAL ASP LYS SER SER SER THR SEQRES 7 H 236 ALA TYR MET GLU LEU ARG SER LEU THR PHE GLU ASP THR SEQRES 8 H 236 ALA VAL TYR TYR CYS ALA ARG GLU THR GLY THR ALA TRP SEQRES 9 H 236 PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 236 ALA ALA GLY GLY GLY GLY SER GLY GLY GLY GLY SER ASP SEQRES 11 H 236 ILE GLN MET THR GLN SER PRO ALA SER LEU SER ALA SER SEQRES 12 H 236 VAL GLY GLU THR VAL THR ILE THR CYS ARG ALA SER GLY SEQRES 13 H 236 ASN ILE HIS ASN PHE LEU ALA TRP TYR GLN GLN LYS GLN SEQRES 14 H 236 GLY LYS SER PRO GLN VAL LEU VAL TYR ASN ALA LYS THR SEQRES 15 H 236 LEU ALA ASP GLY VAL PRO SER ARG PHE SER GLY SER GLY SEQRES 16 H 236 SER GLY THR GLN TYR SER LEU LYS ILE ASN SER LEU GLN SEQRES 17 H 236 PRO GLU ASP PHE GLY SER TYR TYR CYS GLN GLN PHE TRP SEQRES 18 H 236 SER THR PRO TYR THR PHE GLY GLY GLY THR LYS LEU GLU SEQRES 19 H 236 ILE ASN HET ZN A 401 1 HET OLA A 402 20 HET OLB A 403 25 HET OLB A 404 25 HET OLB A 405 25 HET OLB A 406 25 HET OLB A 407 25 HET OLB A 408 25 HET OLB A 409 25 HET OLB A 410 25 HET OLB A 411 25 HET OLB H 301 25 HET 7MT H 302 30 HET 7MT H 303 30 HETNAM ZN ZINC ION HETNAM OLA OLEIC ACID HETNAM OLB (2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM 7MT TB-XO4 FORMUL 3 ZN ZN 2+ FORMUL 4 OLA C18 H34 O2 FORMUL 5 OLB 10(C21 H40 O4) FORMUL 15 7MT 2(C20 H23 N5 O4 TB 5+) FORMUL 17 HOH *19(H2 O) HELIX 1 AA1 PRO A 107 LEU A 111 5 5 HELIX 2 AA2 PRO A 112 LYS A 116 5 5 HELIX 3 AA3 SER A 131 SER A 138 1 8 HELIX 4 AA4 ILE A 139 ARG A 141 5 3 HELIX 5 AA5 GLU A 145 PHE A 168 1 24 HELIX 6 AA6 PRO A 170 PHE A 174 5 5 HELIX 7 AA7 ALA A 176 TYR A 205 1 30 HELIX 8 AA8 SER A 208 PHE A 239 1 32 HELIX 9 AA9 ASN A 242 GLN A 265 1 24 HELIX 10 AB1 TRP A 266 GLN A 273 5 8 HELIX 11 AB2 TYR A 274 SER A 288 1 15 HELIX 12 AB3 GLY A 289 GLY A 301 1 13 HELIX 13 AB4 GLY A 301 ILE A 308 1 8 HELIX 14 AB5 GLY A 309 ARG A 331 1 23 HELIX 15 AB6 HIS A 346 GLY A 377 1 32 HELIX 16 AB7 THR H 28 PHE H 32 5 5 HELIX 17 AB8 GLN H 62 LYS H 65 5 4 HELIX 18 AB9 LYS H 74 SER H 76 5 3 HELIX 19 AC1 THR H 87 THR H 91 5 5 HELIX 20 AC2 GLN H 218 PHE H 222 5 5 SHEET 1 AA1 4 LEU H 3 GLN H 6 0 SHEET 2 AA1 4 SER H 17 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AA1 4 THR H 78 ARG H 84 -1 O LEU H 83 N VAL H 18 SHEET 4 AA1 4 ALA H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AA2 6 GLU H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 112 VAL H 116 1 O THR H 115 N GLU H 10 SHEET 3 AA2 6 ALA H 92 ARG H 98 -1 N ALA H 92 O VAL H 114 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N ASP H 35 O ALA H 97 SHEET 5 AA2 6 LEU H 45 PHE H 51 -1 O GLU H 46 N LYS H 38 SHEET 6 AA2 6 SER H 58 TYR H 60 -1 O ILE H 59 N ASP H 50 SHEET 1 AA3 4 GLU H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 112 VAL H 116 1 O THR H 115 N GLU H 10 SHEET 3 AA3 4 ALA H 92 ARG H 98 -1 N ALA H 92 O VAL H 114 SHEET 4 AA3 4 TYR H 107 TRP H 108 -1 O TYR H 107 N ARG H 98 SHEET 1 AA4 4 MET H 143 SER H 146 0 SHEET 2 AA4 4 VAL H 158 ALA H 164 -1 O ARG H 163 N THR H 144 SHEET 3 AA4 4 GLN H 209 ILE H 214 -1 O TYR H 210 N CYS H 162 SHEET 4 AA4 4 SER H 204 SER H 206 -1 N SER H 204 O SER H 211 SHEET 1 AA5 6 SER H 149 SER H 153 0 SHEET 2 AA5 6 THR H 241 ASN H 246 1 O GLU H 244 N LEU H 150 SHEET 3 AA5 6 GLY H 223 GLN H 229 -1 N GLY H 223 O LEU H 243 SHEET 4 AA5 6 LEU H 172 GLN H 177 -1 N GLN H 177 O SER H 224 SHEET 5 AA5 6 GLN H 184 TYR H 188 -1 O LEU H 186 N TRP H 174 SHEET 6 AA5 6 THR H 192 LEU H 193 -1 O THR H 192 N TYR H 188 SHEET 1 AA6 4 SER H 149 SER H 153 0 SHEET 2 AA6 4 THR H 241 ASN H 246 1 O GLU H 244 N LEU H 150 SHEET 3 AA6 4 GLY H 223 GLN H 229 -1 N GLY H 223 O LEU H 243 SHEET 4 AA6 4 THR H 236 PHE H 237 -1 O THR H 236 N GLN H 229 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 2 CYS H 162 CYS H 227 1555 1555 2.05 LINK NE2 HIS A 202 ZN ZN A 401 1555 1555 2.22 LINK NE2 HIS A 348 ZN ZN A 401 1555 1555 2.21 LINK NE2 HIS A 352 ZN ZN A 401 1555 1555 2.29 LINK ZN ZN A 401 O2 OLA A 402 1555 1555 2.51 CISPEP 1 ILE A 332 PRO A 333 0 8.93 CISPEP 2 SER H 146 PRO H 147 0 -10.57 CISPEP 3 THR H 233 PRO H 234 0 3.31 SITE 1 AC1 6 SER A 198 HIS A 202 ASP A 219 HIS A 348 SITE 2 AC1 6 HIS A 352 OLA A 402 SITE 1 AC2 10 ASP A 219 TYR A 220 ILE A 223 PHE A 282 SITE 2 AC2 10 TYR A 321 TYR A 328 HIS A 348 PHE A 351 SITE 3 AC2 10 PHE A 354 ZN A 401 SITE 1 AC3 6 SER A 196 PHE A 197 LEU A 214 LEU A 218 SITE 2 AC3 6 OLB A 408 OLB H 301 SITE 1 AC4 8 SER A 230 GLY A 286 GLY A 289 ILE A 290 SITE 2 AC4 8 LEU A 314 MET A 315 TYR A 321 HIS A 362 SITE 1 AC5 7 ILE A 164 PHE A 168 GLN A 273 TYR A 274 SITE 2 AC5 7 GLY A 280 OLB A 406 OLB A 411 SITE 1 AC6 12 GLY A 163 ILE A 164 MET A 167 PHE A 168 SITE 2 AC6 12 PRO A 170 ASN A 171 GLN A 273 GLY A 276 SITE 3 AC6 12 ILE A 322 OLB A 405 OLB A 410 HOH A 501 SITE 1 AC7 6 PHE A 158 CYS A 161 LEU A 162 ILE A 164 SITE 2 AC7 6 PHE A 165 PHE A 168 SITE 1 AC8 4 LEU A 214 LEU A 218 GLN A 265 OLB A 403 SITE 1 AC9 6 GLN A 179 LEU A 186 LEU A 189 VAL A 232 SITE 2 AC9 6 TYR A 236 TYR A 240 SITE 1 AD1 8 ASN A 171 PRO A 272 GLN A 273 ARG A 275 SITE 2 AD1 8 GLY A 276 ARG A 331 ARG A 335 OLB A 406 SITE 1 AD2 4 VAL A 263 TYR A 274 GLY A 284 OLB A 405 SITE 1 AD3 11 ARG A 133 PHE A 136 VAL A 297 ILE A 298 SITE 2 AD3 11 GLY A 301 PHE A 302 LEU A 303 OLB A 403 SITE 3 AD3 11 ASN H 167 HIS H 169 GLY H 207 SITE 1 AD4 6 LEU H 3 GLN H 5 TRP H 108 LYS H 181 SITE 2 AD4 6 SER H 182 GLN H 184 SITE 1 AD5 2 GLY H 42 ASN H 246 CRYST1 74.610 100.690 110.510 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013403 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009931 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009049 0.00000