HEADER MEMBRANE PROTEIN 01-MAY-20 6YXH TITLE CRYOGENIC HUMAN ALKALINE CERAMIDASE 3 (ACER3) AT 2.6 A RESOLUTION TITLE 2 DETERMINED BY SERIAL CRYSTALLOGRAPHY (SSX) USING CRYSTALDIRECT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKALINE CERAMIDASE 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALKALINE CDASE 3,ALKALINE DIHYDROCERAMIDASE SB89,ALKALINE COMPND 5 PHYTOCERAMIDASE,APHC; COMPND 6 EC: 3.5.1.-,3.5.1.23; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACER3, APHC, PHCA; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: BOLD-2017 KEYWDS ALKALINE CERAMIDASE, ACER3, SERIAL SYNCHROTRON CRYSTALLOGRAPHY, SSX, KEYWDS 2 CRYSTALDIRECT, LCP CRYSTALLISATION, IN MESO, HTX FACILITY, MEMBRANE KEYWDS 3 PROTEINS, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.D.HEALEY,S.BASU,A.S.HUMM,C.LEYRAT,F.DUPEUX,A.PICA,S.GRANIER, AUTHOR 2 J.A.MARQUEZ REVDAT 3 24-JAN-24 6YXH 1 REMARK REVDAT 2 17-NOV-21 6YXH 1 JRNL REMARK REVDAT 1 12-MAY-21 6YXH 0 JRNL AUTH R.D.HEALEY,S.BASU,A.S.HUMM,C.LEYRAT,X.CONG,J.GOLEBIOWSKI, JRNL AUTH 2 F.DUPEUX,A.PICA,S.GRANIER,J.A.MARQUEZ JRNL TITL AN AUTOMATED PLATFORM FOR STRUCTURAL ANALYSIS OF MEMBRANE JRNL TITL 2 PROTEINS THROUGH SERIAL CRYSTALLOGRAPHY. JRNL REF CELL REP METHODS V. 1 NONE 2021 JRNL REFN ISSN 2667-2375 JRNL PMID 34723237 JRNL DOI 10.1016/J.CRMETH.2021.100102 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (6-FEB-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 885 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.62 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3224 REMARK 3 BIN FREE R VALUE : 0.3495 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 20 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2855 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -21.68310 REMARK 3 B22 (A**2) : 4.17970 REMARK 3 B33 (A**2) : 17.50340 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.420 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.428 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.294 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.424 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.296 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.855 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.839 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2959 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4028 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 988 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 478 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2959 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 380 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2373 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.93 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.35 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 20.4852 5.6041 -40.0276 REMARK 3 T TENSOR REMARK 3 T11: -0.1525 T22: -0.1305 REMARK 3 T33: -0.1095 T12: 0.0515 REMARK 3 T13: -0.0192 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 0.8482 L22: 1.3296 REMARK 3 L33: 2.2172 L12: -0.1087 REMARK 3 L13: 0.4773 L23: 0.8393 REMARK 3 S TENSOR REMARK 3 S11: -0.0832 S12: 0.5342 S13: 0.1547 REMARK 3 S21: 0.5342 S22: 0.1157 S23: -0.2209 REMARK 3 S31: 0.1547 S32: -0.2209 S33: -0.0325 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292107811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.988 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17701 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 36.01 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6G7O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 OR 50 NL BOLUS OVERLAID WITH 600 NL REMARK 280 PRECIPITANT SOLUTION IN CRYSTALDIRECT PLATE-2. 41% PEG 400, 100 REMARK 280 MM HEPES PH 7.5, 75 MM MAGNESIUM SULFATE AND 5% DMSO. REMARK 280 CRYSTALLISATION EXPERIMENTS WERE CARRIED OUT AT THE HTX FACILITY REMARK 280 OF EMBL GRENOBLE. LCP BOLUS WERE HARVESTED AUTOMATICALLY AT REMARK 280 CRYOGENIC CONDITION USING CRYSTALDIRECT TECHNOLOGY., LIPIDIC REMARK 280 CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 129.74500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 129.74500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.73500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.98500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.73500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.98500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 129.74500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.73500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.98500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 129.74500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.73500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 34.98500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TRP A 29 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 480 TRP A 29 CZ2 CZ3 CH2 REMARK 480 TYR A 30 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 TYR A 30 OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 32 O HIS A 81 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 2 64.14 -112.79 REMARK 500 GLU A 8 39.44 -86.69 REMARK 500 TRP A 11 48.97 23.54 REMARK 500 CYS A 21 26.27 -72.10 REMARK 500 GLU A 33 86.75 58.07 REMARK 500 LYS A 138 -73.18 -61.77 REMARK 500 LYS A 140 48.65 -81.10 REMARK 500 VAL A 167 -62.57 -101.98 REMARK 500 SER A 198 38.33 -83.04 REMARK 500 ARG A 203 -74.99 -71.71 REMARK 500 LYS A 205 90.25 33.89 REMARK 500 ILE A 209 -2.84 -59.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 410 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 19 OD1 REMARK 620 2 TRP A 20 O 95.4 REMARK 620 3 GLU A 22 O 169.1 95.4 REMARK 620 4 ASN A 24 OD1 79.4 172.8 89.7 REMARK 620 5 GLU A 33 OE2 70.0 92.8 110.2 90.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 412 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 60 OE1 REMARK 620 2 SO4 A 402 O1 89.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 81 NE2 REMARK 620 2 HIS A 217 NE2 99.7 REMARK 620 3 HIS A 221 NE2 90.3 90.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 408 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 246 OD2 REMARK 620 2 HOH A 541 O 69.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 412 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6G7O RELATED DB: PDB DBREF 6YXH A 2 244 UNP Q9NUN7 ACER3_HUMAN 2 244 SEQADV 6YXH PHE A 1 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ALA A 245 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASP A 246 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LEU A 247 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH GLU A 248 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASP A 249 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASN A 250 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH TRP A 251 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH GLU A 252 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH THR A 253 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LEU A 254 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASN A 255 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASP A 256 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASN A 257 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LEU A 258 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LYS A 259 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH VAL A 260 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ILE A 261 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH GLU A 262 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LYS A 263 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ALA A 264 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASP A 265 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASN A 266 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ALA A 267 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ALA A 268 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH GLN A 269 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH VAL A 270 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LYS A 271 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASP A 272 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ALA A 273 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LEU A 274 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH THR A 275 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LYS A 276 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH MET A 277 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ARG A 278 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ALA A 279 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ALA A 280 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ALA A 281 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LEU A 282 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASP A 283 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ALA A 284 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH GLN A 285 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LYS A 286 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ALA A 287 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH THR A 288 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH PRO A 289 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH PRO A 290 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LYS A 291 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LEU A 292 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH GLU A 293 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASP A 294 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LYS A 295 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH SER A 296 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH PRO A 297 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASP A 298 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH SER A 299 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH PRO A 300 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH GLU A 301 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH MET A 302 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LYS A 303 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASP A 304 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH PHE A 305 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ARG A 306 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH HIS A 307 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH GLY A 308 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH PHE A 309 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASP A 310 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ILE A 311 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LEU A 312 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH VAL A 313 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH GLY A 314 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH GLN A 315 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ILE A 316 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASP A 317 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASP A 318 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ALA A 319 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LEU A 320 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LYS A 321 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LEU A 322 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ALA A 323 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASN A 324 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH GLU A 325 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH GLY A 326 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LYS A 327 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH VAL A 328 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LYS A 329 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH GLU A 330 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ALA A 331 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH GLN A 332 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ALA A 333 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ALA A 334 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ALA A 335 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH GLU A 336 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH GLN A 337 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LEU A 338 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LYS A 339 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH THR A 340 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH THR A 341 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ARG A 342 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ASN A 343 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ALA A 344 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH TYR A 345 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH ILE A 346 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH GLN A 347 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LYS A 348 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH TYR A 349 UNP Q9NUN7 EXPRESSION TAG SEQADV 6YXH LEU A 350 UNP Q9NUN7 EXPRESSION TAG SEQRES 1 A 350 PHE ALA PRO ALA ALA ASP ARG GLU GLY TYR TRP GLY PRO SEQRES 2 A 350 THR THR SER THR LEU ASP TRP CYS GLU GLU ASN TYR SER SEQRES 3 A 350 VAL THR TRP TYR ILE ALA GLU PHE TRP ASN THR VAL SER SEQRES 4 A 350 ASN LEU ILE MET ILE ILE PRO PRO MET PHE GLY ALA VAL SEQRES 5 A 350 GLN SER VAL ARG ASP GLY LEU GLU LYS ARG TYR ILE ALA SEQRES 6 A 350 SER TYR LEU ALA LEU THR VAL VAL GLY MET GLY SER TRP SEQRES 7 A 350 CYS PHE HIS MET THR LEU LYS TYR GLU MET GLN LEU LEU SEQRES 8 A 350 ASP GLU LEU PRO MET ILE TYR SER CYS CYS ILE PHE VAL SEQRES 9 A 350 TYR CYS MET PHE GLU CYS PHE LYS ILE LYS ASN SER VAL SEQRES 10 A 350 ASN TYR HIS LEU LEU PHE THR LEU VAL LEU PHE SER LEU SEQRES 11 A 350 ILE VAL THR THR VAL TYR LEU LYS VAL LYS GLU PRO ILE SEQRES 12 A 350 PHE HIS GLN VAL MET TYR GLY MET LEU VAL PHE THR LEU SEQRES 13 A 350 VAL LEU ARG SER ILE TYR ILE VAL THR TRP VAL TYR PRO SEQRES 14 A 350 TRP LEU ARG GLY LEU GLY TYR THR SER LEU GLY ILE PHE SEQRES 15 A 350 LEU LEU GLY PHE LEU PHE TRP ASN ILE ASP ASN ILE PHE SEQRES 16 A 350 CYS GLU SER LEU ARG ASN PHE ARG LYS LYS VAL PRO PRO SEQRES 17 A 350 ILE ILE GLY ILE THR THR GLN PHE HIS ALA TRP TRP HIS SEQRES 18 A 350 ILE LEU THR GLY LEU GLY SER TYR LEU HIS ILE LEU PHE SEQRES 19 A 350 SER LEU TYR THR ARG THR LEU TYR LEU ARG ALA ASP LEU SEQRES 20 A 350 GLU ASP ASN TRP GLU THR LEU ASN ASP ASN LEU LYS VAL SEQRES 21 A 350 ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL LYS ASP ALA SEQRES 22 A 350 LEU THR LYS MET ARG ALA ALA ALA LEU ASP ALA GLN LYS SEQRES 23 A 350 ALA THR PRO PRO LYS LEU GLU ASP LYS SER PRO ASP SER SEQRES 24 A 350 PRO GLU MET LYS ASP PHE ARG HIS GLY PHE ASP ILE LEU SEQRES 25 A 350 VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU ALA ASN GLU SEQRES 26 A 350 GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA GLU GLN LEU SEQRES 27 A 350 LYS THR THR ARG ASN ALA TYR ILE GLN LYS TYR LEU HET ZN A 401 1 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET NA A 408 1 HET NA A 409 1 HET CA A 410 1 HET MG A 411 1 HET MG A 412 1 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION FORMUL 2 ZN ZN 2+ FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 NA 2(NA 1+) FORMUL 11 CA CA 2+ FORMUL 12 MG 2(MG 2+) FORMUL 14 HOH *60(H2 O) HELIX 1 AA1 PHE A 34 SER A 39 1 6 HELIX 2 AA2 ASN A 40 MET A 43 5 4 HELIX 3 AA3 ILE A 44 ASP A 57 1 14 HELIX 4 AA4 GLU A 60 LEU A 84 1 25 HELIX 5 AA5 LYS A 85 CYS A 110 1 26 HELIX 6 AA6 ASN A 118 VAL A 139 1 22 HELIX 7 AA7 GLU A 141 VAL A 167 1 27 HELIX 8 AA8 TYR A 168 TRP A 170 5 3 HELIX 9 AA9 LEU A 171 PHE A 195 1 25 HELIX 10 AB1 SER A 198 LYS A 204 1 7 HELIX 11 AB2 PRO A 208 THR A 213 1 6 HELIX 12 AB3 GLN A 215 ARG A 244 1 30 HELIX 13 AB4 ASP A 246 ALA A 264 1 19 HELIX 14 AB5 ASN A 266 GLN A 285 1 20 HELIX 15 AB6 PRO A 289 GLU A 293 5 5 HELIX 16 AB7 SER A 299 GLU A 325 1 27 HELIX 17 AB8 LYS A 327 ALA A 333 1 7 HELIX 18 AB9 ALA A 333 ILE A 346 1 14 HELIX 19 AC1 GLN A 347 LEU A 350 5 4 LINK OD2 ASP A 19 NA NA A 409 1555 1555 2.53 LINK OD1 ASP A 19 CA CA A 410 1555 1555 2.19 LINK O TRP A 20 CA CA A 410 1555 1555 2.28 LINK O GLU A 22 CA CA A 410 1555 1555 2.33 LINK OD1 ASN A 24 CA CA A 410 1555 1555 2.56 LINK OE2 GLU A 33 CA CA A 410 1555 1555 2.68 LINK OE1 GLU A 60 MG MG A 412 1555 1555 2.84 LINK NE2 HIS A 81 ZN ZN A 401 1555 1555 2.35 LINK NE2 HIS A 217 ZN ZN A 401 1555 1555 2.33 LINK NE2 HIS A 221 ZN ZN A 401 1555 1555 2.38 LINK OD2 ASP A 246 NA NA A 408 1555 1555 2.53 LINK O1 SO4 A 402 MG MG A 412 1555 1555 2.60 LINK NA NA A 408 O HOH A 541 1555 1555 2.73 SITE 1 AC1 3 HIS A 81 HIS A 217 HIS A 221 SITE 1 AC2 5 GLU A 60 LYS A 61 ARG A 62 MG A 412 SITE 2 AC2 5 HOH A 501 SITE 1 AC3 5 LYS A 61 LYS A 259 LYS A 339 ARG A 342 SITE 2 AC3 5 HOH A 501 SITE 1 AC4 4 PHE A 111 ARG A 159 HOH A 505 HOH A 513 SITE 1 AC5 5 TYR A 119 ASN A 343 ALA A 344 LYS A 348 SITE 2 AC5 5 HOH A 507 SITE 1 AC6 4 LYS A 303 ARG A 306 MG A 411 HOH A 537 SITE 1 AC7 4 ASN A 266 ALA A 267 MG A 411 HOH A 511 SITE 1 AC8 2 ASP A 246 HOH A 541 SITE 1 AC9 2 ASP A 19 ASN A 24 SITE 1 AD1 5 ASP A 19 TRP A 20 GLU A 22 ASN A 24 SITE 2 AD1 5 GLU A 33 SITE 1 AD2 2 SO4 A 406 SO4 A 407 SITE 1 AD3 4 GLU A 60 LYS A 114 ASN A 115 SO4 A 402 CRYST1 61.470 69.970 259.490 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016268 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014292 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003854 0.00000