HEADER TRANSFERASE 05-MAY-20 6YYG TITLE CRYSTAL STRUCTURE OF 5-(TRIFLUOROMETHOXY)INDOLINE-2,3-DIONE COVALENTLY TITLE 2 BOUND TO THE PH DOMAIN OF BRUTON'S TYROSINE KINASE MUTANT R28C COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE BTK; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: AGAMMAGLOBULINEMIA TYROSINE KINASE,ATK,B-CELL PROGENITOR COMPND 5 KINASE,BPK,BRUTON TYROSINE KINASE; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BTK, AGMX1, ATK, BPK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAT4 KEYWDS BTK, COVALENT FRAGMENTS, SURFACE ENTROPHY REDUCTION, CRYSTAL KEYWDS 2 ENGINEERING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.BREAR,J.WAGSTAFF,M.HYVONEN REVDAT 3 06-NOV-24 6YYG 1 REMARK REVDAT 2 24-JAN-24 6YYG 1 REMARK REVDAT 1 12-MAY-21 6YYG 0 JRNL AUTH P.BREAR,G.FISCHER,M.MAY,T.PANTELEJEVS,R.MATHIEU,M.ROSSMANN, JRNL AUTH 2 J.WAGSTAFF,B.BLASZCZYK,M.HYVONEN JRNL TITL OPTIMISING CRYSTALLOGRAPHIC SYSTEMS FOR STRUCTURE-GUIDED JRNL TITL 2 DRUG DISCOVERY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 49164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2575 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.4220 REMARK 3 BIN FREE R VALUE SET COUNT : 173 REMARK 3 BIN FREE R VALUE : 0.4380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5206 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 202 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.69000 REMARK 3 B22 (A**2) : 1.88000 REMARK 3 B33 (A**2) : -3.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.199 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.214 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.414 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5412 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5048 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7302 ; 1.588 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11747 ; 1.220 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 619 ; 8.263 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 310 ;32.527 ;21.613 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 993 ;18.178 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;16.807 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 673 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6005 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1184 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6YYG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108527. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52358 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 51.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 2.33600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BTK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS 8.5 PH, 32.5% W/V PEG 3350, REMARK 280 200MM MGCL2 500 MM NACL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.59750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 17 REMARK 465 LYS A 18 REMARK 465 LYS A 19 REMARK 465 THR A 20 REMARK 465 ASN A 170 REMARK 465 GLN B 16 REMARK 465 LYS B 17 REMARK 465 LYS B 18 REMARK 465 LYS B 19 REMARK 465 THR B 20 REMARK 465 SER B 21 REMARK 465 PRO B 22 REMARK 465 PRO B 80 REMARK 465 ARG B 81 REMARK 465 ARG B 82 REMARK 465 GLY B 83 REMARK 465 GLU B 84 REMARK 465 GLU B 85 REMARK 465 SER B 86 REMARK 465 SER B 87 REMARK 465 ASN B 170 REMARK 465 THR C 20 REMARK 465 SER C 21 REMARK 465 PRO C 80 REMARK 465 ARG C 81 REMARK 465 ARG C 82 REMARK 465 GLY C 83 REMARK 465 GLU C 84 REMARK 465 GLU C 85 REMARK 465 SER C 86 REMARK 465 SER C 87 REMARK 465 GLU C 88 REMARK 465 MET C 89 REMARK 465 ASN C 170 REMARK 465 GLN D 16 REMARK 465 LYS D 17 REMARK 465 LYS D 18 REMARK 465 LYS D 19 REMARK 465 THR D 20 REMARK 465 SER D 21 REMARK 465 PRO D 22 REMARK 465 PRO D 80 REMARK 465 ARG D 81 REMARK 465 ARG D 82 REMARK 465 GLY D 83 REMARK 465 GLU D 84 REMARK 465 GLU D 85 REMARK 465 SER D 86 REMARK 465 SER D 87 REMARK 465 GLU D 88 REMARK 465 MET D 89 REMARK 465 ASN D 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS D 12 C7 Q1B D 201 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 3 145.33 -33.24 REMARK 500 ARG A 82 112.66 98.33 REMARK 500 TYR A 106 -154.83 -128.69 REMARK 500 TYR A 106 -150.08 -128.69 REMARK 500 ASN C 24 117.81 -175.28 REMARK 500 CYS C 63 135.70 -170.03 REMARK 500 ASP C 107 -72.15 -35.96 REMARK 500 SER D 14 -158.25 -82.53 REMARK 500 GLU D 108 36.67 -78.19 REMARK 500 CYS D 155 -12.67 -143.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 96 OE1 REMARK 620 2 HOH A 354 O 92.2 REMARK 620 3 HOH A 359 O 161.6 80.6 REMARK 620 4 HOH B 306 O 96.2 154.7 84.1 REMARK 620 5 HOH B 308 O 100.5 105.3 97.8 96.6 REMARK 620 6 HOH B 344 O 85.2 74.3 76.5 82.6 174.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 143 ND1 REMARK 620 2 CYS A 154 SG 95.0 REMARK 620 3 CYS A 155 SG 97.9 121.9 REMARK 620 4 CYS A 165 SG 128.7 100.2 113.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 143 ND1 REMARK 620 2 CYS B 154 SG 111.0 REMARK 620 3 CYS B 155 SG 92.8 113.3 REMARK 620 4 CYS B 165 SG 114.3 109.9 114.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 143 ND1 REMARK 620 2 CYS C 154 SG 108.1 REMARK 620 3 CYS C 155 SG 94.7 120.9 REMARK 620 4 CYS C 165 SG 124.8 97.4 113.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 143 ND1 REMARK 620 2 CYS D 154 SG 115.9 REMARK 620 3 CYS D 155 SG 93.6 121.9 REMARK 620 4 CYS D 165 SG 116.8 95.3 115.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q1B A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide Q1B B 201 and LYS B REMARK 800 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide Q1B D 201 and LYS D REMARK 800 12 DBREF 6YYG A 2 170 UNP Q06187 BTK_HUMAN 36 204 DBREF 6YYG B 2 170 UNP Q06187 BTK_HUMAN 36 204 DBREF 6YYG C 2 170 UNP Q06187 BTK_HUMAN 36 204 DBREF 6YYG D 2 170 UNP Q06187 BTK_HUMAN 36 204 SEQRES 1 A 169 ALA ALA VAL ILE LEU GLU SER ILE PHE LEU LYS ARG SER SEQRES 2 A 169 GLN GLN LYS LYS LYS THR SER PRO LEU ASN PHE LYS LYS SEQRES 3 A 169 ARG LEU PHE LEU LEU THR VAL HIS LYS LEU SER TYR TYR SEQRES 4 A 169 GLU TYR ASP PHE GLU ARG GLY ARG ARG GLY SER LYS LYS SEQRES 5 A 169 GLY SER ILE ASP VAL GLU LYS ILE THR CYS VAL GLU THR SEQRES 6 A 169 VAL VAL PRO GLU LYS ASN PRO PRO PRO GLU ARG GLN ILE SEQRES 7 A 169 PRO ARG ARG GLY GLU GLU SER SER GLU MET GLU GLN ILE SEQRES 8 A 169 SER ILE ILE GLU ARG PHE PRO TYR PRO PHE GLN VAL VAL SEQRES 9 A 169 TYR ASP GLU GLY PRO LEU TYR VAL PHE SER PRO THR GLU SEQRES 10 A 169 GLU LEU ARG LYS ARG TRP ILE HIS GLN LEU LYS ASN VAL SEQRES 11 A 169 ILE ARG TYR ASN SER ASP LEU VAL GLN LYS TYR HIS PRO SEQRES 12 A 169 CYS PHE TRP ILE ASP GLY GLN TYR LEU CYS CYS SER GLN SEQRES 13 A 169 THR ALA LYS ASN ALA MET GLY CYS GLN ILE LEU GLU ASN SEQRES 1 B 169 ALA ALA VAL ILE LEU GLU SER ILE PHE LEU LYS ARG SER SEQRES 2 B 169 GLN GLN LYS LYS LYS THR SER PRO LEU ASN PHE LYS LYS SEQRES 3 B 169 ARG LEU PHE LEU LEU THR VAL HIS LYS LEU SER TYR TYR SEQRES 4 B 169 GLU TYR ASP PHE GLU ARG GLY ARG ARG GLY SER LYS LYS SEQRES 5 B 169 GLY SER ILE ASP VAL GLU LYS ILE THR CYS VAL GLU THR SEQRES 6 B 169 VAL VAL PRO GLU LYS ASN PRO PRO PRO GLU ARG GLN ILE SEQRES 7 B 169 PRO ARG ARG GLY GLU GLU SER SER GLU MET GLU GLN ILE SEQRES 8 B 169 SER ILE ILE GLU ARG PHE PRO TYR PRO PHE GLN VAL VAL SEQRES 9 B 169 TYR ASP GLU GLY PRO LEU TYR VAL PHE SER PRO THR GLU SEQRES 10 B 169 GLU LEU ARG LYS ARG TRP ILE HIS GLN LEU LYS ASN VAL SEQRES 11 B 169 ILE ARG TYR ASN SER ASP LEU VAL GLN LYS TYR HIS PRO SEQRES 12 B 169 CYS PHE TRP ILE ASP GLY GLN TYR LEU CYS CYS SER GLN SEQRES 13 B 169 THR ALA LYS ASN ALA MET GLY CYS GLN ILE LEU GLU ASN SEQRES 1 C 169 ALA ALA VAL ILE LEU GLU SER ILE PHE LEU LYS ARG SER SEQRES 2 C 169 GLN GLN LYS LYS LYS THR SER PRO LEU ASN PHE LYS LYS SEQRES 3 C 169 ARG LEU PHE LEU LEU THR VAL HIS LYS LEU SER TYR TYR SEQRES 4 C 169 GLU TYR ASP PHE GLU ARG GLY ARG ARG GLY SER LYS LYS SEQRES 5 C 169 GLY SER ILE ASP VAL GLU LYS ILE THR CYS VAL GLU THR SEQRES 6 C 169 VAL VAL PRO GLU LYS ASN PRO PRO PRO GLU ARG GLN ILE SEQRES 7 C 169 PRO ARG ARG GLY GLU GLU SER SER GLU MET GLU GLN ILE SEQRES 8 C 169 SER ILE ILE GLU ARG PHE PRO TYR PRO PHE GLN VAL VAL SEQRES 9 C 169 TYR ASP GLU GLY PRO LEU TYR VAL PHE SER PRO THR GLU SEQRES 10 C 169 GLU LEU ARG LYS ARG TRP ILE HIS GLN LEU LYS ASN VAL SEQRES 11 C 169 ILE ARG TYR ASN SER ASP LEU VAL GLN LYS TYR HIS PRO SEQRES 12 C 169 CYS PHE TRP ILE ASP GLY GLN TYR LEU CYS CYS SER GLN SEQRES 13 C 169 THR ALA LYS ASN ALA MET GLY CYS GLN ILE LEU GLU ASN SEQRES 1 D 169 ALA ALA VAL ILE LEU GLU SER ILE PHE LEU LYS ARG SER SEQRES 2 D 169 GLN GLN LYS LYS LYS THR SER PRO LEU ASN PHE LYS LYS SEQRES 3 D 169 ARG LEU PHE LEU LEU THR VAL HIS LYS LEU SER TYR TYR SEQRES 4 D 169 GLU TYR ASP PHE GLU ARG GLY ARG ARG GLY SER LYS LYS SEQRES 5 D 169 GLY SER ILE ASP VAL GLU LYS ILE THR CYS VAL GLU THR SEQRES 6 D 169 VAL VAL PRO GLU LYS ASN PRO PRO PRO GLU ARG GLN ILE SEQRES 7 D 169 PRO ARG ARG GLY GLU GLU SER SER GLU MET GLU GLN ILE SEQRES 8 D 169 SER ILE ILE GLU ARG PHE PRO TYR PRO PHE GLN VAL VAL SEQRES 9 D 169 TYR ASP GLU GLY PRO LEU TYR VAL PHE SER PRO THR GLU SEQRES 10 D 169 GLU LEU ARG LYS ARG TRP ILE HIS GLN LEU LYS ASN VAL SEQRES 11 D 169 ILE ARG TYR ASN SER ASP LEU VAL GLN LYS TYR HIS PRO SEQRES 12 D 169 CYS PHE TRP ILE ASP GLY GLN TYR LEU CYS CYS SER GLN SEQRES 13 D 169 THR ALA LYS ASN ALA MET GLY CYS GLN ILE LEU GLU ASN HET Q1B A 201 15 HET MG A 202 1 HET ZN A 203 1 HET Q1B B 201 15 HET ZN B 202 1 HET ZN C 201 1 HET Q1B D 201 15 HET MG D 202 1 HET ZN D 203 1 HETNAM Q1B 5-(TRIFLUOROMETHYLOXY)-1,3-DIHYDROINDOL-2-ONE HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION FORMUL 5 Q1B 3(C9 H6 F3 N O2) FORMUL 6 MG 2(MG 2+) FORMUL 7 ZN 4(ZN 2+) FORMUL 14 HOH *202(H2 O) HELIX 1 AA1 GLU A 59 ILE A 61 5 3 HELIX 2 AA2 PRO A 74 GLN A 78 5 5 HELIX 3 AA3 GLN A 91 GLU A 96 5 6 HELIX 4 AA4 THR A 117 ILE A 132 1 16 HELIX 5 AA5 GLU B 59 ILE B 61 5 3 HELIX 6 AA6 PRO B 74 GLN B 78 5 5 HELIX 7 AA7 ILE B 92 ARG B 97 1 6 HELIX 8 AA8 THR B 117 ILE B 132 1 16 HELIX 9 AA9 GLU C 59 ILE C 61 5 3 HELIX 10 AB1 PRO C 74 GLN C 78 5 5 HELIX 11 AB2 ILE C 92 ARG C 97 1 6 HELIX 12 AB3 THR C 117 ILE C 132 1 16 HELIX 13 AB4 PRO D 74 GLN D 78 5 5 HELIX 14 AB5 ILE D 92 GLU D 96 5 5 HELIX 15 AB6 THR D 117 ILE D 132 1 16 SHEET 1 AA1 7 ARG A 48 ASP A 57 0 SHEET 2 AA1 7 LYS A 36 ASP A 43 -1 N ASP A 43 O ARG A 48 SHEET 3 AA1 7 ASN A 24 THR A 33 -1 N LEU A 31 O SER A 38 SHEET 4 AA1 7 VAL A 4 SER A 14 -1 N SER A 14 O ASN A 24 SHEET 5 AA1 7 PRO A 110 SER A 115 -1 O PHE A 114 N LEU A 11 SHEET 6 AA1 7 TYR A 100 VAL A 105 -1 N TYR A 100 O SER A 115 SHEET 7 AA1 7 CYS A 63 THR A 66 -1 N GLU A 65 O GLN A 103 SHEET 1 AA2 2 LYS A 141 TYR A 142 0 SHEET 2 AA2 2 GLN A 166 ILE A 167 -1 O GLN A 166 N TYR A 142 SHEET 1 AA3 2 TRP A 147 ILE A 148 0 SHEET 2 AA3 2 GLN A 151 TYR A 152 -1 O GLN A 151 N ILE A 148 SHEET 1 AA4 7 ARG B 48 ASP B 57 0 SHEET 2 AA4 7 LYS B 36 ASP B 43 -1 N GLU B 41 O GLY B 50 SHEET 3 AA4 7 PHE B 25 LEU B 32 -1 N LEU B 31 O SER B 38 SHEET 4 AA4 7 LEU B 6 ARG B 13 -1 N SER B 8 O PHE B 30 SHEET 5 AA4 7 GLY B 109 SER B 115 -1 O PHE B 114 N LEU B 11 SHEET 6 AA4 7 TYR B 100 TYR B 106 -1 N VAL B 104 O LEU B 111 SHEET 7 AA4 7 CYS B 63 THR B 66 -1 N GLU B 65 O GLN B 103 SHEET 1 AA5 2 LYS B 141 TYR B 142 0 SHEET 2 AA5 2 GLN B 166 ILE B 167 -1 O GLN B 166 N TYR B 142 SHEET 1 AA6 2 TRP B 147 ILE B 148 0 SHEET 2 AA6 2 GLN B 151 TYR B 152 -1 O GLN B 151 N ILE B 148 SHEET 1 AA7 7 ARG C 48 ASP C 57 0 SHEET 2 AA7 7 LYS C 36 ASP C 43 -1 N GLU C 41 O GLY C 50 SHEET 3 AA7 7 PHE C 25 LEU C 32 -1 N LEU C 31 O SER C 38 SHEET 4 AA7 7 LEU C 6 ARG C 13 -1 N SER C 8 O PHE C 30 SHEET 5 AA7 7 PRO C 110 SER C 115 -1 O PHE C 114 N LEU C 11 SHEET 6 AA7 7 TYR C 100 VAL C 105 -1 N TYR C 100 O SER C 115 SHEET 7 AA7 7 CYS C 63 THR C 66 -1 N GLU C 65 O GLN C 103 SHEET 1 AA8 2 LYS C 141 TYR C 142 0 SHEET 2 AA8 2 GLN C 166 ILE C 167 -1 O GLN C 166 N TYR C 142 SHEET 1 AA9 7 ARG D 48 ASP D 57 0 SHEET 2 AA9 7 LYS D 36 ASP D 43 -1 N GLU D 41 O GLY D 50 SHEET 3 AA9 7 PHE D 25 LEU D 32 -1 N LEU D 31 O SER D 38 SHEET 4 AA9 7 LEU D 6 ARG D 13 -1 N SER D 8 O PHE D 30 SHEET 5 AA9 7 GLY D 109 SER D 115 -1 O PHE D 114 N LEU D 11 SHEET 6 AA9 7 TYR D 100 TYR D 106 -1 N TYR D 100 O SER D 115 SHEET 7 AA9 7 ILE D 61 THR D 66 -1 N GLU D 65 O GLN D 103 SHEET 1 AB1 2 LYS D 141 TYR D 142 0 SHEET 2 AB1 2 GLN D 166 ILE D 167 -1 O GLN D 166 N TYR D 142 SHEET 1 AB2 2 TRP D 147 ILE D 148 0 SHEET 2 AB2 2 GLN D 151 TYR D 152 -1 O GLN D 151 N ILE D 148 LINK NZ LYS B 12 C6 Q1B B 201 1555 1555 1.27 LINK NZ LYS D 12 C6 Q1B D 201 1555 1555 1.26 LINK OE1 GLU A 96 MG MG A 202 1555 1555 2.16 LINK ND1 HIS A 143 ZN ZN A 203 1555 1555 2.27 LINK SG CYS A 154 ZN ZN A 203 1555 1555 2.54 LINK SG CYS A 155 ZN ZN A 203 1555 1555 2.54 LINK SG CYS A 165 ZN ZN A 203 1555 1555 2.53 LINK MG MG A 202 O HOH A 354 1555 1555 2.16 LINK MG MG A 202 O HOH A 359 1555 1555 2.17 LINK MG MG A 202 O HOH B 306 1555 1555 2.03 LINK MG MG A 202 O HOH B 308 1555 1555 2.25 LINK MG MG A 202 O HOH B 344 1555 1555 2.29 LINK ND1 HIS B 143 ZN ZN B 202 1555 1555 2.23 LINK SG CYS B 154 ZN ZN B 202 1555 1555 2.47 LINK SG CYS B 155 ZN ZN B 202 1555 1555 2.57 LINK SG CYS B 165 ZN ZN B 202 1555 1555 2.04 LINK ND1 HIS C 143 ZN ZN C 201 1555 1555 2.26 LINK SG CYS C 154 ZN ZN C 201 1555 1555 2.54 LINK SG CYS C 155 ZN ZN C 201 1555 1555 2.54 LINK SG CYS C 165 ZN ZN C 201 1555 1555 2.51 LINK OE1 GLU D 96 MG MG D 202 1555 1555 2.46 LINK ND1 HIS D 143 ZN ZN D 203 1555 1555 1.96 LINK SG CYS D 154 ZN ZN D 203 1555 1555 2.18 LINK SG CYS D 155 ZN ZN D 203 1555 1555 2.44 LINK SG CYS D 165 ZN ZN D 203 1555 1555 2.35 SITE 1 AC1 10 LYS A 12 SER A 14 GLN A 15 PHE A 30 SITE 2 AC1 10 LEU A 37 TYR A 39 SER A 55 ILE A 56 SITE 3 AC1 10 TYR A 106 LEU A 111 SITE 1 AC2 6 GLU A 96 HOH A 354 HOH A 359 HOH B 306 SITE 2 AC2 6 HOH B 308 HOH B 344 SITE 1 AC3 4 HIS A 143 CYS A 154 CYS A 155 CYS A 165 SITE 1 AC4 4 HIS B 143 CYS B 154 CYS B 155 CYS B 165 SITE 1 AC5 4 HIS C 143 CYS C 154 CYS C 155 CYS C 165 SITE 1 AC6 1 GLU D 96 SITE 1 AC7 4 HIS D 143 CYS D 154 CYS D 155 CYS D 165 SITE 1 AC8 15 LEU B 11 ARG B 13 SER B 14 GLN B 15 SITE 2 AC8 15 PHE B 25 LYS B 26 PHE B 30 LEU B 37 SITE 3 AC8 15 TYR B 39 GLY B 54 SER B 55 ILE B 56 SITE 4 AC8 15 TYR B 106 LEU B 111 TYR B 112 SITE 1 AC9 12 LEU D 11 ARG D 13 SER D 14 PHE D 25 SITE 2 AC9 12 LYS D 26 PHE D 30 TYR D 39 SER D 55 SITE 3 AC9 12 ILE D 56 TYR D 106 LEU D 111 TYR D 112 CRYST1 68.649 67.195 79.641 90.00 99.66 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014567 0.000000 0.002479 0.00000 SCALE2 0.000000 0.014882 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012737 0.00000