HEADER SIGNALING PROTEIN 20-MAY-20 6Z3G TITLE REPULSIVE GUIDANCE MOLECULE A (RGMA) IN COMPLEX WITH GROWTH TITLE 2 DIFFERENTIATION FACTOR 5 (GDF5) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH/DIFFERENTIATION FACTOR 5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GDF-5,BONE MORPHOGENETIC PROTEIN 14,BMP-14,CARTILAGE-DERIVED COMPND 5 MORPHOGENETIC PROTEIN 1,CDMP-1,LIPOPOLYSACCHARIDE-ASSOCIATED PROTEIN COMPND 6 4,LPS-ASSOCIATED PROTEIN 4,RADOTERMIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: REPULSIVE GUIDANCE MOLECULE A; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: RGM DOMAIN FAMILY MEMBER A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GDF5, BMP14, CDMP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RGMA, RGM; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 17 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-11268 KEYWDS REPULSIVE GUIDANCE MOLECULE, RGM, BONE MORPHOGENETIC PROTEIN, BMP, KEYWDS 2 GROWTH DIFFERENTIATION FACTOR 5, GDF5, NEOGENIN, AXON GUIDANCE, KEYWDS 3 TGFBETA SIGNALLING, BRAIN DEVELOPMENT, IRON METABOLISM., SIGNALING KEYWDS 4 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.MALINAUSKAS,T.V.PEER,B.BISHOP,T.D.MULLER,C.SIEBOLD REVDAT 4 24-JAN-24 6Z3G 1 SSBOND REVDAT 3 15-JUL-20 6Z3G 1 JRNL REVDAT 2 08-JUL-20 6Z3G 1 JRNL REVDAT 1 01-JUL-20 6Z3G 0 JRNL AUTH T.MALINAUSKAS,T.V.PEER,B.BISHOP,T.D.MUELLER,C.SIEBOLD JRNL TITL REPULSIVE GUIDANCE MOLECULES LOCK GROWTH DIFFERENTIATION JRNL TITL 2 FACTOR 5 IN AN INHIBITORY COMPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 15620 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32576689 JRNL DOI 10.1073/PNAS.2000561117 REMARK 2 REMARK 2 RESOLUTION. 2.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13RC2_2986: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 7337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8250 - 4.0095 1.00 2490 125 0.2133 0.2670 REMARK 3 2 4.0095 - 3.1826 0.99 2295 128 0.2672 0.3201 REMARK 3 3 3.1826 - 2.7804 0.95 2173 126 0.3128 0.3632 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1313 REMARK 3 ANGLE : 0.624 1786 REMARK 3 CHIRALITY : 0.042 194 REMARK 3 PLANARITY : 0.005 230 REMARK 3 DIHEDRAL : 7.531 804 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 397 THROUGH 501) REMARK 3 ORIGIN FOR THE GROUP (A): -44.0027 25.8121 9.7377 REMARK 3 T TENSOR REMARK 3 T11: 0.5945 T22: 0.7066 REMARK 3 T33: 0.4720 T12: -0.1734 REMARK 3 T13: 0.0872 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 2.2797 L22: 4.7923 REMARK 3 L33: 6.2090 L12: -2.5503 REMARK 3 L13: -0.5221 L23: 4.2965 REMARK 3 S TENSOR REMARK 3 S11: 0.0538 S12: 0.1060 S13: 0.1085 REMARK 3 S21: -0.4783 S22: 0.1181 S23: -0.1329 REMARK 3 S31: -0.4183 S32: 0.4438 S33: -0.2042 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 47 THROUGH 116) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1674 10.1992 21.0140 REMARK 3 T TENSOR REMARK 3 T11: 2.4832 T22: 2.0977 REMARK 3 T33: 2.2690 T12: -0.4943 REMARK 3 T13: -0.5069 T23: -0.1994 REMARK 3 L TENSOR REMARK 3 L11: 1.2774 L22: 0.0000 REMARK 3 L33: 2.7443 L12: 0.0698 REMARK 3 L13: 1.8012 L23: 0.1374 REMARK 3 S TENSOR REMARK 3 S11: 0.4827 S12: 0.2917 S13: 0.2563 REMARK 3 S21: 1.0831 S22: -0.3103 S23: -1.8007 REMARK 3 S31: -0.7593 S32: 0.5073 S33: -0.0068 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Z3G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108827. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7375 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.780 REMARK 200 RESOLUTION RANGE LOW (A) : 49.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 18.50 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 4.12900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4UHY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE PH 5.5, 24% V/V POLYETHYLENE GLYCOL REMARK 280 (PEG) 400., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.54667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.27333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.54667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.27333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.54667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 33.27333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 66.54667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.27333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -48.82500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 84.56738 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 33.27333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 385 REMARK 465 LYS A 386 REMARK 465 ARG A 387 REMARK 465 GLN A 388 REMARK 465 GLY A 389 REMARK 465 LYS A 390 REMARK 465 ARG A 391 REMARK 465 PRO A 392 REMARK 465 SER A 393 REMARK 465 LYS A 394 REMARK 465 ASN A 395 REMARK 465 LEU A 396 REMARK 465 GLU B 43 REMARK 465 THR B 44 REMARK 465 GLY B 45 REMARK 465 SER B 46 REMARK 465 THR B 61 REMARK 465 SER B 62 REMARK 465 GLY B 63 REMARK 465 SER B 64 REMARK 465 HIS B 65 REMARK 465 ALA B 66 REMARK 465 PRO B 67 REMARK 465 ALA B 68 REMARK 465 SER B 69 REMARK 465 ASP B 70 REMARK 465 ASP B 71 REMARK 465 THR B 72 REMARK 465 PRO B 73 REMARK 465 LYS B 117 REMARK 465 ASP B 118 REMARK 465 GLY B 119 REMARK 465 PRO B 120 REMARK 465 THR B 121 REMARK 465 SER B 122 REMARK 465 GLN B 123 REMARK 465 PRO B 124 REMARK 465 ARG B 125 REMARK 465 LEU B 126 REMARK 465 ARG B 127 REMARK 465 THR B 128 REMARK 465 LEU B 129 REMARK 465 PRO B 130 REMARK 465 PRO B 131 REMARK 465 ALA B 132 REMARK 465 GLY B 133 REMARK 465 ASP B 134 REMARK 465 SER B 135 REMARK 465 GLN B 136 REMARK 465 GLU B 137 REMARK 465 ARG B 138 REMARK 465 SER B 139 REMARK 465 GLY B 140 REMARK 465 THR B 141 REMARK 465 LYS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 HIS B 148 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 410 CG CD CE NZ REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 ARG B 88 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 417 -24.63 -143.53 REMARK 500 ILE A 419 -72.40 -85.67 REMARK 500 PHE A 427 167.55 68.07 REMARK 500 CYS A 433 77.00 -118.29 REMARK 500 GLU A 442 68.60 31.96 REMARK 500 ASP A 480 -153.91 -84.70 REMARK 500 LYS B 49 52.58 -144.79 REMARK 500 CYS B 93 30.97 -97.83 REMARK 500 ASN B 114 81.22 57.54 REMARK 500 CYS B 115 60.05 -106.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 601 DBREF 6Z3G A 387 501 UNP P43026 GDF5_HUMAN 387 501 DBREF 6Z3G B 54 139 UNP Q96B86 RGMA_HUMAN 54 139 SEQADV 6Z3G MET A 385 UNP P43026 INITIATING METHIONINE SEQADV 6Z3G LYS A 386 UNP P43026 EXPRESSION TAG SEQADV 6Z3G GLU B 43 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G THR B 44 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G GLY B 45 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G SER B 46 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G PRO B 47 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G CYS B 48 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G LYS B 49 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G ILE B 50 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G LEU B 51 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G LYS B 52 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G CYS B 53 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G GLY B 140 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G THR B 141 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G LYS B 142 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G HIS B 143 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G HIS B 144 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G HIS B 145 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G HIS B 146 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G HIS B 147 UNP Q96B86 EXPRESSION TAG SEQADV 6Z3G HIS B 148 UNP Q96B86 EXPRESSION TAG SEQRES 1 A 117 MET LYS ARG GLN GLY LYS ARG PRO SER LYS ASN LEU LYS SEQRES 2 A 117 ALA ARG CYS SER ARG LYS ALA LEU HIS VAL ASN PHE LYS SEQRES 3 A 117 ASP MET GLY TRP ASP ASP TRP ILE ILE ALA PRO LEU GLU SEQRES 4 A 117 TYR GLU ALA PHE HIS CYS GLU GLY LEU CYS GLU PHE PRO SEQRES 5 A 117 LEU ARG SER HIS LEU GLU PRO THR ASN HIS ALA VAL ILE SEQRES 6 A 117 GLN THR LEU MET ASN SER MET ASP PRO GLU SER THR PRO SEQRES 7 A 117 PRO THR CYS CYS VAL PRO THR ARG LEU SER PRO ILE SER SEQRES 8 A 117 ILE LEU PHE ILE ASP SER ALA ASN ASN VAL VAL TYR LYS SEQRES 9 A 117 GLN TYR GLU ASP MET VAL VAL GLU SER CYS GLY CYS ARG SEQRES 1 B 106 GLU THR GLY SER PRO CYS LYS ILE LEU LYS CYS ASN SER SEQRES 2 B 106 GLU PHE TRP SER ALA THR SER GLY SER HIS ALA PRO ALA SEQRES 3 B 106 SER ASP ASP THR PRO GLU PHE CYS ALA ALA LEU ARG SER SEQRES 4 B 106 TYR ALA LEU CYS THR ARG ARG THR ALA ARG THR CYS ARG SEQRES 5 B 106 GLY ASP LEU ALA TYR HIS SER ALA VAL HIS GLY ILE GLU SEQRES 6 B 106 ASP LEU MET SER GLN HIS ASN CYS SER LYS ASP GLY PRO SEQRES 7 B 106 THR SER GLN PRO ARG LEU ARG THR LEU PRO PRO ALA GLY SEQRES 8 B 106 ASP SER GLN GLU ARG SER GLY THR LYS HIS HIS HIS HIS SEQRES 9 B 106 HIS HIS HET CIT A 601 13 HETNAM CIT CITRIC ACID FORMUL 3 CIT C6 H8 O7 HELIX 1 AA1 LYS A 410 ASP A 416 5 7 HELIX 2 AA2 ARG A 438 GLU A 442 5 5 HELIX 3 AA3 THR A 444 ASP A 457 1 14 HELIX 4 AA4 LYS B 49 PHE B 57 1 9 HELIX 5 AA5 ALA B 78 ARG B 88 1 11 HELIX 6 AA6 ASP B 96 SER B 111 1 16 SHEET 1 AA1 2 SER A 401 LYS A 403 0 SHEET 2 AA1 2 HIS A 428 GLU A 430 -1 O GLU A 430 N SER A 401 SHEET 1 AA2 2 HIS A 406 ASN A 408 0 SHEET 2 AA2 2 GLU A 423 GLU A 425 -1 O TYR A 424 N VAL A 407 SHEET 1 AA3 3 ILE A 418 ALA A 420 0 SHEET 2 AA3 3 CYS A 466 ILE A 479 -1 O LEU A 477 N ILE A 419 SHEET 3 AA3 3 VAL A 485 CYS A 500 -1 O GLU A 496 N ARG A 470 SSBOND 1 CYS A 400 CYS A 466 1555 1555 2.05 SSBOND 2 CYS A 429 CYS A 498 1555 1555 2.04 SSBOND 3 CYS A 433 CYS A 500 1555 1555 2.05 SSBOND 4 CYS A 465 CYS A 465 1555 12565 2.02 SSBOND 5 CYS B 48 CYS B 93 1555 1555 2.03 SSBOND 6 CYS B 53 CYS B 85 1555 1555 2.04 SSBOND 7 CYS B 76 CYS B 115 1555 1555 2.03 CISPEP 1 ALA A 420 PRO A 421 0 -4.87 CISPEP 2 PHE A 435 PRO A 436 0 -1.88 SITE 1 AC1 4 LYS A 403 ALA A 404 HIS A 440 ARG A 470 CRYST1 97.650 97.650 99.820 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010241 0.005912 0.000000 0.00000 SCALE2 0.000000 0.011825 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010018 0.00000