HEADER SUGAR BINDING PROTEIN 22-MAY-20 6Z41 TITLE NMR SOLUTION STRUCTURE OF THE CARBOHYDRATE-BINDING MODULE FAMILY 73 TITLE 2 (CBM73) FROM CELLVIBRIO JAPONICUS CJLPMO10A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOHYDRATE BINDING PROTEIN, PUTATIVE, CPB33A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CELLVIBRIO JAPONICUS UEDA107; SOURCE 3 ORGANISM_TAXID: 498211; SOURCE 4 GENE: CBP33A, CJA_2191; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PNIC-CH KEYWDS CBM, CHITIN, SUGAR BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.MADLAND,F.L.AACHMANN,G.COURTADE REVDAT 4 14-JUN-23 6Z41 1 JRNL REVDAT 3 29-SEP-21 6Z41 1 JRNL REVDAT 2 23-JUN-21 6Z41 1 REMARK REVDAT 1 05-MAY-21 6Z41 0 JRNL AUTH E.MADLAND,Z.FORSBERG,Y.WANG,K.LINDORFF-LARSEN,A.NIEBISCH, JRNL AUTH 2 J.MODREGGER,V.G.H.EIJSINK,F.L.AACHMANN,G.COURTADE JRNL TITL STRUCTURAL AND FUNCTIONAL VARIATION OF CHITIN-BINDING JRNL TITL 2 DOMAINS OF A LYTIC POLYSACCHARIDE MONOOXYGENASE FROM JRNL TITL 3 CELLVIBRIO JAPONICUS. JRNL REF J.BIOL.CHEM. V. 297 01084 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34411561 JRNL DOI 10.1016/J.JBC.2021.101084 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.MADLAND,Z.FORSBERG,Y.WANG,K.LINDORFF-LARSEN,A.NIEBISCH, REMARK 1 AUTH 2 J.MODREGGER,V.G.H.EIJSINK,F.L.AACHMANN,G.COURTADE REMARK 1 TITL NMR STRUCTURES AND FUNCTIONAL ROLES OF TWO RELATED REMARK 1 TITL 2 CHITIN-BINDING DOMAINS OF A LYTIC POLYSACCHARIDE REMARK 1 TITL 3 MONOOXYGENASE FROM CELLVIBRIO JAPONICUS REMARK 1 REF BIORXIV 2021 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2021.04.25.441307 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98.13, YASARA 14.6.23 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), ELMAR REMARK 3 KRIEGER, KEEHYOUNG JOO, JINWOO LEE,3 JOOYOUNG LEE, REMARK 3 SRIVATSAN RAMAN, JAMES THOMPSON, MIKE TYKA, DAVID REMARK 3 BAKER, AND KEVIN KARPLUS (YASARA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 656 NOE REMARK 3 -DERIVED DISTANCE CONSTRAINTS, 66 DIHEDRAL ANGLE RESTRAINTS AND REMARK 3 2 DISULPHIDE BOND RESTRAINTS REMARK 4 REMARK 4 6Z41 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108857. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 55 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.1 MM CBM73, 25 MM SODIUM REMARK 210 PHOSPHATE, 10 MM SODIUM CHLORIDE, REMARK 210 90% H2O/10% D2O; 0.1 MM CBM73, REMARK 210 25 MM SODIUM PHOSPHATE, 10 MM REMARK 210 SODIUM CHLORIDE, 100% D2O; 0.1 REMARK 210 MM [U-15N] CBM73, 25 MM SODIUM REMARK 210 PHOSPHATE, 10 MM SODIUM CHLORIDE, REMARK 210 90% H2O/10% D2O; 0.1 MM [U-13C; REMARK 210 U-15N] CBM73, 25 MM SODIUM REMARK 210 PHOSPHATE, 10 MM SODIUM CHLORIDE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-15N HSQC; REMARK 210 3D CBCA(CO)NH; 3D 1H-15N NOESY; REMARK 210 2D 1H-13C HSQC; 3D HNCA; 3D HCCH- REMARK 210 TOCSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.5, CARA 1.5.5 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 256 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 5 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 6 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 12 SER A 6 N - CA - CB ANGL. DEV. = -9.4 DEGREES REMARK 500 12 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 15 SER A 6 N - CA - CB ANGL. DEV. = -9.2 DEGREES REMARK 500 17 SER A 6 N - CA - CB ANGL. DEV. = -9.8 DEGREES REMARK 500 19 CYS A 36 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 20 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 20 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 14 141.57 -177.49 REMARK 500 1 PRO A 44 36.08 -82.33 REMARK 500 1 VAL A 57 -69.09 -107.71 REMARK 500 1 CYS A 60 29.15 -147.23 REMARK 500 1 ALA A 62 -46.44 63.17 REMARK 500 1 HIS A 65 151.71 66.53 REMARK 500 2 PRO A 7 172.48 -55.47 REMARK 500 2 VAL A 57 -67.86 -107.50 REMARK 500 3 SER A 14 144.97 -178.92 REMARK 500 3 THR A 46 -34.30 -163.22 REMARK 500 3 ALA A 49 -46.99 -134.28 REMARK 500 3 VAL A 57 -73.50 -107.56 REMARK 500 3 CYS A 60 49.99 -157.47 REMARK 500 4 SER A 14 143.23 -174.43 REMARK 500 4 ALA A 19 107.29 -27.52 REMARK 500 4 THR A 46 -37.85 -171.04 REMARK 500 4 VAL A 57 -71.21 -107.58 REMARK 500 4 ALA A 62 168.20 63.31 REMARK 500 5 THR A 46 -34.95 -168.16 REMARK 500 5 VAL A 57 -67.86 -107.51 REMARK 500 5 CYS A 60 50.20 -156.39 REMARK 500 6 SER A 14 149.18 -177.80 REMARK 500 6 ALA A 19 78.30 57.60 REMARK 500 6 PRO A 44 42.70 -80.53 REMARK 500 6 ALA A 49 -42.91 -144.07 REMARK 500 6 VAL A 57 -73.44 -107.68 REMARK 500 6 CYS A 60 41.41 -151.96 REMARK 500 6 HIS A 67 90.27 51.79 REMARK 500 7 SER A 14 128.18 -173.34 REMARK 500 7 ALA A 19 104.07 -50.61 REMARK 500 7 PRO A 44 42.46 -80.28 REMARK 500 7 ALA A 49 -45.75 -139.61 REMARK 500 7 VAL A 57 -72.12 -107.64 REMARK 500 7 CYS A 60 41.19 -150.07 REMARK 500 7 ALA A 62 -37.75 64.71 REMARK 500 7 HIS A 67 -164.13 55.92 REMARK 500 8 SER A 14 130.40 -174.61 REMARK 500 8 THR A 46 -39.37 -167.55 REMARK 500 8 VAL A 57 -69.68 -107.54 REMARK 500 8 CYS A 60 54.04 -157.68 REMARK 500 9 ASN A 3 -130.57 52.15 REMARK 500 9 PRO A 7 172.39 -57.43 REMARK 500 9 SER A 14 126.95 -176.32 REMARK 500 9 ALA A 49 -43.82 -137.59 REMARK 500 9 VAL A 57 -69.88 -107.71 REMARK 500 9 CYS A 60 32.74 -143.46 REMARK 500 9 HIS A 64 8.33 50.12 REMARK 500 10 ALA A 16 -170.00 -121.89 REMARK 500 10 ASN A 18 -60.79 -99.77 REMARK 500 10 ALA A 19 74.33 58.82 REMARK 500 REMARK 500 THIS ENTRY HAS 130 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6Z40 RELATED DB: PDB REMARK 900 PDB ENTRY FOR THE SAME CITATION REMARK 900 RELATED ID: 34520 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF THE CARBOHYDRATE-BINDING MODULE FAMILY 73 REMARK 900 (CBM73) FROM CELLVIBRIO JAPONICUS CJLPMO10A DBREF 6Z41 A 2 61 UNP B3PJ79 B3PJ79_CELJU 338 397 SEQADV 6Z41 MET A 1 UNP B3PJ79 INITIATING METHIONINE SEQADV 6Z41 ALA A 62 UNP B3PJ79 EXPRESSION TAG SEQADV 6Z41 HIS A 63 UNP B3PJ79 EXPRESSION TAG SEQADV 6Z41 HIS A 64 UNP B3PJ79 EXPRESSION TAG SEQADV 6Z41 HIS A 65 UNP B3PJ79 EXPRESSION TAG SEQADV 6Z41 HIS A 66 UNP B3PJ79 EXPRESSION TAG SEQADV 6Z41 HIS A 67 UNP B3PJ79 EXPRESSION TAG SEQADV 6Z41 HIS A 68 UNP B3PJ79 EXPRESSION TAG SEQRES 1 A 68 MET GLY ASN CYS ILE SER PRO VAL TYR VAL ASP GLY SER SEQRES 2 A 68 SER TYR ALA ASN ASN ALA LEU VAL GLN ASN ASN GLY SER SEQRES 3 A 68 GLU TYR ARG CYS LEU VAL GLY GLY TRP CYS THR VAL GLY SEQRES 4 A 68 GLY PRO TYR ALA PRO GLY THR GLY TRP ALA TRP ALA ASN SEQRES 5 A 68 ALA TRP GLU LEU VAL ARG SER CYS GLN ALA HIS HIS HIS SEQRES 6 A 68 HIS HIS HIS SHEET 1 AA1 3 VAL A 21 ASN A 23 0 SHEET 2 AA1 3 SER A 26 CYS A 30 -1 O TYR A 28 N VAL A 21 SHEET 3 AA1 3 TRP A 54 LEU A 56 -1 O GLU A 55 N ARG A 29 SSBOND 1 CYS A 4 CYS A 60 1555 1555 2.04 SSBOND 2 CYS A 30 CYS A 36 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1