HEADER TRANSFERASE 26-MAY-20 6Z51 TITLE CRYSTAL STRUCTURE OF CLK3 IN COMPLEX WITH MACROCYCLE ODS2002941 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE CLK3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CDC-LIKE KINASE 3; COMPND 5 EC: 2.7.12.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CLK3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS KINASE, KINASE INHIBITOR, CLK3, MACROCYCLE, NANOCYCLIC, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,P.BENDERITTER,J.HOFLACK,A.DENIS,S.KNAPP,STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (SGC) REVDAT 2 24-JAN-24 6Z51 1 REMARK REVDAT 1 03-JUN-20 6Z51 0 JRNL AUTH A.CHAIKUAD,P.BENDERITTER,J.HOFLACK,A.DENIS,S.KNAPP, JRNL AUTH 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF CLK3 IN COMPLEX WITH MACROCYCLE JRNL TITL 2 ODS2002941 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 29554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1568 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1956 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2902 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 111 REMARK 3 SOLVENT ATOMS : 349 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.93000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.81000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.553 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3205 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2292 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4317 ; 1.647 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5558 ; 0.935 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 387 ; 5.952 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;35.181 ;23.735 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 572 ;14.505 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.474 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 446 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3599 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 683 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): 46.8926 27.3535 17.2128 REMARK 3 T TENSOR REMARK 3 T11: 0.0391 T22: 0.0663 REMARK 3 T33: 0.0741 T12: -0.0167 REMARK 3 T13: 0.0138 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 2.5666 L22: 1.3413 REMARK 3 L33: 3.3636 L12: 0.5102 REMARK 3 L13: 0.5896 L23: 0.4566 REMARK 3 S TENSOR REMARK 3 S11: -0.0122 S12: 0.1842 S13: -0.0967 REMARK 3 S21: 0.0513 S22: -0.0129 S23: -0.1817 REMARK 3 S31: -0.1582 S32: 0.1551 S33: 0.0251 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 212 A 371 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1318 26.4982 17.5184 REMARK 3 T TENSOR REMARK 3 T11: 0.0659 T22: 0.0682 REMARK 3 T33: 0.0157 T12: -0.0102 REMARK 3 T13: 0.0136 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.6369 L22: 0.6811 REMARK 3 L33: 0.6007 L12: 0.1707 REMARK 3 L13: -0.4730 L23: -0.0432 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.2833 S13: 0.0559 REMARK 3 S21: -0.1570 S22: -0.0087 S23: -0.0647 REMARK 3 S31: -0.0393 S32: -0.0380 S33: 0.0087 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 372 A 484 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8137 23.9506 28.4846 REMARK 3 T TENSOR REMARK 3 T11: 0.0055 T22: 0.0483 REMARK 3 T33: 0.0580 T12: -0.0122 REMARK 3 T13: 0.0030 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.1161 L22: 1.5216 REMARK 3 L33: 2.2882 L12: -0.2859 REMARK 3 L13: -0.0749 L23: 1.1002 REMARK 3 S TENSOR REMARK 3 S11: -0.0365 S12: 0.1896 S13: -0.0490 REMARK 3 S21: -0.0357 S22: -0.0017 S23: 0.1794 REMARK 3 S31: -0.0026 S32: -0.1187 S33: 0.0382 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6Z51 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108917. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31124 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.853 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.61300 REMARK 200 R SYM FOR SHELL (I) : 0.61300 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2EU9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3350, 0.2M POTASSIUM/SODIUM REMARK 280 PHOSPHATE, 10% ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.51000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.12000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.51000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.12000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 125 REMARK 465 MET A 126 REMARK 465 GLN A 127 REMARK 465 SER A 128 REMARK 465 SER A 129 REMARK 465 LYS A 130 REMARK 465 ARG A 131 REMARK 465 SER A 132 REMARK 465 SER A 133 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 221 O HOH A 601 2.04 REMARK 500 O HOH A 775 O HOH A 791 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 275 CG HIS A 275 CD2 0.055 REMARK 500 HIS A 328 CG HIS A 328 CD2 0.063 REMARK 500 HIS A 377 CG HIS A 377 CD2 0.060 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 153 25.66 46.45 REMARK 500 ARG A 155 -49.02 -155.16 REMARK 500 ARG A 189 150.71 -48.53 REMARK 500 THR A 282 -10.03 80.31 REMARK 500 ASP A 283 43.11 -141.22 REMARK 500 SER A 305 57.73 -90.33 REMARK 500 ASP A 320 73.26 66.19 REMARK 500 ALA A 336 153.34 81.70 REMARK 500 ALA A 352 -152.39 -154.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q8B A 519 DBREF 6Z51 A 127 484 UNP P49761 CLK3_HUMAN 127 484 SEQADV 6Z51 SER A 125 UNP P49761 EXPRESSION TAG SEQADV 6Z51 MET A 126 UNP P49761 EXPRESSION TAG SEQRES 1 A 360 SER MET GLN SER SER LYS ARG SER SER ARG SER VAL GLU SEQRES 2 A 360 ASP ASP LYS GLU GLY HIS LEU VAL CYS ARG ILE GLY ASP SEQRES 3 A 360 TRP LEU GLN GLU ARG TYR GLU ILE VAL GLY ASN LEU GLY SEQRES 4 A 360 GLU GLY THR PHE GLY LYS VAL VAL GLU CYS LEU ASP HIS SEQRES 5 A 360 ALA ARG GLY LYS SER GLN VAL ALA LEU LYS ILE ILE ARG SEQRES 6 A 360 ASN VAL GLY LYS TYR ARG GLU ALA ALA ARG LEU GLU ILE SEQRES 7 A 360 ASN VAL LEU LYS LYS ILE LYS GLU LYS ASP LYS GLU ASN SEQRES 8 A 360 LYS PHE LEU CYS VAL LEU MET SER ASP TRP PHE ASN PHE SEQRES 9 A 360 HIS GLY HIS MET CYS ILE ALA PHE GLU LEU LEU GLY LYS SEQRES 10 A 360 ASN THR PHE GLU PHE LEU LYS GLU ASN ASN PHE GLN PRO SEQRES 11 A 360 TYR PRO LEU PRO HIS VAL ARG HIS MET ALA TYR GLN LEU SEQRES 12 A 360 CYS HIS ALA LEU ARG PHE LEU HIS GLU ASN GLN LEU THR SEQRES 13 A 360 HIS THR ASP LEU LYS PRO GLU ASN ILE LEU PHE VAL ASN SEQRES 14 A 360 SER GLU PHE GLU THR LEU TYR ASN GLU HIS LYS SER CYS SEQRES 15 A 360 GLU GLU LYS SER VAL LYS ASN THR SER ILE ARG VAL ALA SEQRES 16 A 360 ASP PHE GLY SER ALA THR PHE ASP HIS GLU HIS HIS THR SEQRES 17 A 360 THR ILE VAL ALA THR ARG HIS TYR ARG PRO PRO GLU VAL SEQRES 18 A 360 ILE LEU GLU LEU GLY TRP ALA GLN PRO CYS ASP VAL TRP SEQRES 19 A 360 SER ILE GLY CYS ILE LEU PHE GLU TYR TYR ARG GLY PHE SEQRES 20 A 360 THR LEU PHE GLN THR HIS GLU ASN ARG GLU HIS LEU VAL SEQRES 21 A 360 MET MET GLU LYS ILE LEU GLY PRO ILE PRO SER HIS MET SEQRES 22 A 360 ILE HIS ARG THR ARG LYS GLN LYS TYR PHE TYR LYS GLY SEQRES 23 A 360 GLY LEU VAL TRP ASP GLU ASN SER SER ASP GLY ARG TYR SEQRES 24 A 360 VAL LYS GLU ASN CYS LYS PRO LEU LYS SER TYR MET LEU SEQRES 25 A 360 GLN ASP SER LEU GLU HIS VAL GLN LEU PHE ASP LEU MET SEQRES 26 A 360 ARG ARG MET LEU GLU PHE ASP PRO ALA GLN ARG ILE THR SEQRES 27 A 360 LEU ALA GLU ALA LEU LEU HIS PRO PHE PHE ALA GLY LEU SEQRES 28 A 360 THR PRO GLU GLU ARG SER PHE HIS THR HET PO4 A 501 5 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 8 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HET EDO A 512 4 HET EDO A 513 4 HET EDO A 514 4 HET EDO A 515 4 HET EDO A 516 4 HET EDO A 517 4 HET EDO A 518 4 HET Q8B A 519 38 HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM Q8B N-CYCLOPENTYL-2-[(11,15-DIMETHYL-10-OXO-8-OXA-2,11,15, HETNAM 2 Q8B 19,21,23-HEXAZATETRACYCLO[15.6.1.13,7.020, HETNAM 3 Q8B 24]PENTACOSA-1(23),3(25),4,6,17,20(24),21-HEPTAEN-6- HETNAM 4 Q8B YL)OXY]ACETAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PO4 O4 P 3- FORMUL 3 EDO 17(C2 H6 O2) FORMUL 20 Q8B C27 H35 N7 O4 FORMUL 21 HOH *349(H2 O) HELIX 1 AA1 ALA A 177 GLY A 179 5 3 HELIX 2 AA2 VAL A 191 ASP A 212 1 22 HELIX 3 AA3 ASN A 242 ASN A 250 1 9 HELIX 4 AA4 PRO A 256 GLU A 276 1 21 HELIX 5 AA5 LYS A 285 GLU A 287 5 3 HELIX 6 AA6 THR A 337 ARG A 341 5 5 HELIX 7 AA7 PRO A 342 LEU A 347 1 6 HELIX 8 AA8 GLN A 353 GLY A 370 1 18 HELIX 9 AA9 GLU A 378 GLY A 391 1 14 HELIX 10 AB1 PRO A 394 THR A 401 1 8 HELIX 11 AB2 LYS A 403 LYS A 405 5 3 HELIX 12 AB3 SER A 418 CYS A 428 1 11 HELIX 13 AB4 PRO A 430 MET A 435 5 6 HELIX 14 AB5 SER A 439 LEU A 453 1 15 HELIX 15 AB6 THR A 462 LEU A 467 1 6 HELIX 16 AB7 LEU A 468 LEU A 475 5 8 HELIX 17 AB8 THR A 476 SER A 481 1 6 SHEET 1 AA1 6 TRP A 151 LEU A 152 0 SHEET 2 AA1 6 TYR A 156 GLY A 165 -1 O TYR A 156 N LEU A 152 SHEET 3 AA1 6 GLY A 168 ASP A 175 -1 O GLU A 172 N VAL A 159 SHEET 4 AA1 6 GLN A 182 ILE A 188 -1 O LEU A 185 N VAL A 171 SHEET 5 AA1 6 HIS A 231 GLU A 237 -1 O MET A 232 N ILE A 188 SHEET 6 AA1 6 MET A 222 PHE A 228 -1 N PHE A 228 O HIS A 231 SHEET 1 AA2 2 LEU A 279 THR A 280 0 SHEET 2 AA2 2 THR A 325 PHE A 326 -1 O THR A 325 N THR A 280 SHEET 1 AA3 2 ILE A 289 PHE A 291 0 SHEET 2 AA3 2 ILE A 316 VAL A 318 -1 O ARG A 317 N LEU A 290 SHEET 1 AA4 2 PHE A 296 TYR A 300 0 SHEET 2 AA4 2 GLU A 307 VAL A 311 -1 O GLU A 308 N LEU A 299 SHEET 1 AA5 2 PHE A 407 TYR A 408 0 SHEET 2 AA5 2 GLY A 411 LEU A 412 -1 O GLY A 411 N TYR A 408 SITE 1 AC1 5 ARG A 195 ARG A 199 LYS A 403 LYS A 405 SITE 2 AC1 5 HOH A 744 SITE 1 AC2 7 LEU A 412 VAL A 413 TRP A 414 GLU A 416 SITE 2 AC2 7 HOH A 616 HOH A 640 HOH A 777 SITE 1 AC3 5 GLU A 381 TRP A 414 ASP A 415 SER A 418 SITE 2 AC3 5 HOH A 626 SITE 1 AC4 7 GLN A 375 HIS A 399 THR A 401 HOH A 605 SITE 2 AC4 7 HOH A 655 HOH A 718 HOH A 803 SITE 1 AC5 9 HIS A 330 HIS A 331 LYS A 425 EDO A 506 SITE 2 AC5 9 HOH A 602 HOH A 624 HOH A 649 HOH A 669 SITE 3 AC5 9 HOH A 886 SITE 1 AC6 7 HIS A 331 GLY A 350 TRP A 351 ARG A 422 SITE 2 AC6 7 LYS A 425 EDO A 505 HOH A 674 SITE 1 AC7 7 ALA A 352 ASN A 417 SER A 419 PRO A 457 SITE 2 AC7 7 HOH A 613 HOH A 628 HOH A 711 SITE 1 AC8 4 GLU A 348 ARG A 402 GLU A 426 ASN A 427 SITE 1 AC9 3 ASP A 447 ARG A 451 GLU A 454 SITE 1 AD1 6 GLU A 137 ASP A 138 SER A 418 SER A 419 SITE 2 AD1 6 ASP A 420 HOH A 638 SITE 1 AD2 5 VAL A 145 CYS A 146 ARG A 147 ASP A 150 SITE 2 AD2 5 HOH A 679 SITE 1 AD3 4 ASN A 313 THR A 314 GLU A 479 HOH A 825 SITE 1 AD4 6 HIS A 330 THR A 332 THR A 333 HOH A 607 SITE 2 AD4 6 HOH A 826 HOH A 904 SITE 1 AD5 10 PHE A 371 THR A 372 LEU A 373 ILE A 389 SITE 2 AD5 10 CYS A 428 TYR A 434 HOH A 605 HOH A 620 SITE 3 AD5 10 HOH A 736 HOH A 768 SITE 1 AD6 4 GLU A 387 LYS A 388 GLY A 391 HOH A 694 SITE 1 AD7 4 LYS A 140 PRO A 394 SER A 395 HIS A 396 SITE 1 AD8 4 LYS A 432 ARG A 450 HOH A 680 HOH A 694 SITE 1 AD9 3 ASP A 447 HIS A 469 HOH A 758 SITE 1 AE1 17 LEU A 162 GLY A 163 GLU A 164 PHE A 167 SITE 2 AE1 17 ALA A 184 GLU A 237 LEU A 239 ASN A 242 SITE 3 AE1 17 GLU A 287 ASN A 288 LEU A 290 ASP A 320 SITE 4 AE1 17 HOH A 652 HOH A 705 HOH A 756 HOH A 812 SITE 5 AE1 17 HOH A 818 CRYST1 89.020 62.240 75.690 90.00 97.79 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011233 0.000000 0.001537 0.00000 SCALE2 0.000000 0.016067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013335 0.00000