HEADER SUGAR BINDING PROTEIN 26-MAY-20 6Z5M TITLE THE RSL - SULFONATO-CALIX[8]ARENE COMPLEX, I23 FORM, GLY-HCL PH 2.2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUCOSE-BINDING LECTIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE FUCOSE-BINDING LECTIN PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA SOLANACEARUM; SOURCE 3 ORGANISM_TAXID: 305; SOURCE 4 GENE: E7Z57_08365, RSP795_21825, RSP822_19650, RUN39_V1_50103; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CALIXARENE, PROTEIN FRAMEWORK, CAGE, CRYSTAL ENGINEERING, MOLECULAR KEYWDS 2 GLUE, SYNTHETIC RECEPTOR, MACROCYCLE, BIOMATERIAL, SUGAR BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.RAMBERG,S.ENGILBERGE,P.B.CROWLEY REVDAT 2 24-JAN-24 6Z5M 1 REMARK REVDAT 1 14-APR-21 6Z5M 0 JRNL AUTH K.O.RAMBERG,S.ENGILBERGE,T.SKOREK,P.B.CROWLEY JRNL TITL FACILE FABRICATION OF PROTEIN-MACROCYCLE FRAMEWORKS. JRNL REF J.AM.CHEM.SOC. V. 143 1896 2021 JRNL REFN ESSN 1520-5126 JRNL PMID 33470808 JRNL DOI 10.1021/JACS.0C10697 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 24487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 1271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.8060 - 3.3277 1.00 2686 139 0.1255 0.1273 REMARK 3 2 3.3277 - 2.6413 1.00 2635 119 0.1517 0.1604 REMARK 3 3 2.6413 - 2.3074 1.00 2588 139 0.1643 0.1804 REMARK 3 4 2.3074 - 2.0964 1.00 2573 146 0.1644 0.1966 REMARK 3 5 2.0964 - 1.9462 1.00 2594 136 0.1669 0.1782 REMARK 3 6 1.9462 - 1.8314 1.00 2519 161 0.1735 0.1878 REMARK 3 7 1.8314 - 1.7397 1.00 2563 164 0.1843 0.2594 REMARK 3 8 1.7397 - 1.6640 1.00 2532 139 0.1831 0.2062 REMARK 3 9 1.6640 - 1.6000 0.98 2526 128 0.1891 0.1895 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 945 REMARK 3 ANGLE : 0.816 1350 REMARK 3 CHIRALITY : 0.055 114 REMARK 3 PLANARITY : 0.004 280 REMARK 3 DIHEDRAL : 8.433 446 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Z5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 2.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24491 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 73.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 34.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 14.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BT9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M GLY-HCL PH 2.2, 0.8 M AMMONIUM REMARK 280 SULFATE, 0.2 M MAGNESIUM CHLORIDE, 0.01 M SULFONATO-CALIX[8] REMARK 280 ARENE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 51.80550 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.80550 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.80550 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 51.80550 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.80550 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.80550 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 51.80550 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 51.80550 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 51.80550 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 51.80550 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 51.80550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.80550 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 51.80550 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 51.80550 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 51.80550 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 51.80550 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 51.80550 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 51.80550 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 51.80550 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 51.80550 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 51.80550 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 51.80550 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 51.80550 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 51.80550 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 51.80550 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 51.80550 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 51.80550 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 51.80550 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 51.80550 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 51.80550 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 51.80550 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 51.80550 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 51.80550 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 51.80550 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 51.80550 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 51.80550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 464 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 389 O HOH A 411 2.04 REMARK 500 O HOH A 395 O HOH A 492 2.09 REMARK 500 O20 EVB A 202 O HOH A 301 2.16 REMARK 500 O HOH A 325 O HOH A 362 2.17 REMARK 500 O HOH A 360 O HOH A 458 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 495 O HOH A 507 9555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 34 26.12 -140.96 REMARK 500 ASN A 79 46.37 -149.66 REMARK 500 THR A 89 75.48 -107.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 509 DISTANCE = 5.91 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BDF A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BDF A 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6STH RELATED DB: PDB REMARK 900 6STH IS A RELATED PROTEIN - CALIXARENE FRAMEWORK. REMARK 900 RELATED ID: 6Z5G RELATED DB: PDB REMARK 900 6Z5G IS THE SAME I23 CAGE PROTEIN - CALIXARENE FRAMEWORK FORMED AT REMARK 900 A HIGHER PH. DBREF1 6Z5M A 1 90 UNP A0A0S4TLR1_RALSL DBREF2 6Z5M A A0A0S4TLR1 2 91 SEQRES 1 A 90 SER SER VAL GLN THR ALA ALA THR SER TRP GLY THR VAL SEQRES 2 A 90 PRO SER ILE ARG VAL TYR THR ALA ASN ASN GLY LYS ILE SEQRES 3 A 90 THR GLU ARG CYS TRP ASP GLY LYS GLY TRP TYR THR GLY SEQRES 4 A 90 ALA PHE ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER SEQRES 5 A 90 TRP LEU VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SEQRES 6 A 90 SER THR GLY THR THR THR THR GLU TRP CYS TRP ASP GLY SEQRES 7 A 90 ASN GLY TRP THR LYS GLY ALA TYR THR ALA THR ASN HET EVB A 201 96 HET EVB A 202 96 HET GOL A 203 6 HET BDF A 204 12 HET BDF A 205 12 HETNAM EVB SULFONATO-CALIX[8]ARENE HETNAM GOL GLYCEROL HETNAM BDF BETA-D-FRUCTOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN BDF BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 2 EVB 2(C56 H48 O32 S8) FORMUL 4 GOL C3 H8 O3 FORMUL 5 BDF 2(C6 H12 O6) FORMUL 7 HOH *209(H2 O) SHEET 1 AA1 4 GLN A 4 TRP A 10 0 SHEET 2 AA1 4 SER A 15 ASN A 22 -1 O TYR A 19 N ALA A 6 SHEET 3 AA1 4 LYS A 25 TRP A 31 -1 O LYS A 25 N ASN A 22 SHEET 4 AA1 4 TRP A 36 PRO A 44 -1 O TYR A 37 N CYS A 30 SHEET 1 AA2 4 ASN A 47 VAL A 55 0 SHEET 2 AA2 4 ALA A 58 THR A 67 -1 O ARG A 62 N THR A 51 SHEET 3 AA2 4 THR A 70 TRP A 76 -1 O THR A 72 N ALA A 65 SHEET 4 AA2 4 TRP A 81 LYS A 83 -1 O THR A 82 N CYS A 75 CISPEP 1 VAL A 13 PRO A 14 0 -2.80 SITE 1 AC1 32 LYS A 25 ALA A 40 ASN A 42 GLU A 43 SITE 2 AC1 32 PRO A 44 TRP A 74 GLY A 80 TRP A 81 SITE 3 AC1 32 THR A 82 LYS A 83 EVB A 202 HOH A 314 SITE 4 AC1 32 HOH A 321 HOH A 325 HOH A 334 HOH A 336 SITE 5 AC1 32 HOH A 337 HOH A 341 HOH A 345 HOH A 347 SITE 6 AC1 32 HOH A 363 HOH A 365 HOH A 367 HOH A 370 SITE 7 AC1 32 HOH A 372 HOH A 375 HOH A 380 HOH A 397 SITE 8 AC1 32 HOH A 407 HOH A 410 HOH A 419 HOH A 421 SITE 1 AC2 23 THR A 12 VAL A 13 ASP A 32 GLY A 33 SITE 2 AC2 23 LYS A 34 HIS A 60 EVB A 201 HOH A 301 SITE 3 AC2 23 HOH A 306 HOH A 308 HOH A 313 HOH A 315 SITE 4 AC2 23 HOH A 324 HOH A 341 HOH A 342 HOH A 358 SITE 5 AC2 23 HOH A 383 HOH A 387 HOH A 396 HOH A 398 SITE 6 AC2 23 HOH A 406 HOH A 426 HOH A 430 SITE 1 AC3 6 SER A 2 ALA A 21 ASN A 23 GLY A 24 SITE 2 AC3 6 ASP A 46 HOH A 422 SITE 1 AC4 12 ILE A 16 TRP A 31 TRP A 36 ARG A 62 SITE 2 AC4 12 GLU A 73 GLY A 84 ALA A 85 TYR A 86 SITE 3 AC4 12 HOH A 303 HOH A 311 HOH A 319 HOH A 327 SITE 1 AC5 11 ARG A 17 GLU A 28 TYR A 37 GLY A 39 SITE 2 AC5 11 ALA A 40 TRP A 76 TRP A 81 HOH A 323 SITE 3 AC5 11 HOH A 371 HOH A 373 HOH A 378 CRYST1 103.611 103.611 103.611 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009651 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009651 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009651 0.00000