HEADER OXIDOREDUCTASE 29-MAY-20 6Z6Q
TITLE ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE (ASPH) OXYGENASE AND TPR DOMAINS
TITLE 2 IN COMPLEX WITH MANGANESE, 3-ETHYL-2-OXOGLUTARATE, AND FACTOR X
TITLE 3 SUBSTRATE PEPTIDE FRAGMENT(39MER-4SER)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: ASPARTATE BETA-HYDROXYLASE,ASP BETA-HYDROXYLASE,PEPTIDE-
COMPND 5 ASPARTATE BETA-DIOXYGENASE;
COMPND 6 EC: 1.14.11.16;
COMPND 7 ENGINEERED: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: COAGULATION FACTOR X;
COMPND 10 CHAIN: B;
COMPND 11 SYNONYM: STUART FACTOR,STUART-PROWER FACTOR;
COMPND 12 EC: 3.4.21.6;
COMPND 13 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: ASPH, BAH;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 MOL_ID: 2;
SOURCE 9 SYNTHETIC: YES;
SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 11 ORGANISM_COMMON: HUMAN;
SOURCE 12 ORGANISM_TAXID: 9606
KEYWDS ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE, DIOXYGENASE, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.NAKASHIMA,L.BREWITZ,C.J.SCHOFIELD
REVDAT 5 05-FEB-25 6Z6Q 1 HETSYN
REVDAT 4 23-OCT-24 6Z6Q 1 REMARK
REVDAT 3 07-FEB-24 6Z6Q 1 REMARK
REVDAT 2 19-JUL-23 6Z6Q 1 JRNL REMARK
REVDAT 1 17-MAR-21 6Z6Q 0
JRNL AUTH L.BREWITZ,Y.NAKASHIMA,C.J.SCHOFIELD
JRNL TITL SYNTHESIS OF 2-OXOGLUTARATE DERIVATIVES AND THEIR EVALUATION
JRNL TITL 2 AS COSUBSTRATES AND INHIBITORS OF HUMAN
JRNL TITL 3 ASPARTATE/ASPARAGINE-BETA-HYDROXYLASE.
JRNL REF CHEM SCI V. 12 1327 2020
JRNL REFN ISSN 2041-6520
JRNL PMID 34163896
JRNL DOI 10.1039/D0SC04301J
REMARK 2
REMARK 2 RESOLUTION. 1.81 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17.1_3660
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.00
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330
REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7
REMARK 3 NUMBER OF REFLECTIONS : 47397
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.209
REMARK 3 R VALUE (WORKING SET) : 0.208
REMARK 3 FREE R VALUE : 0.232
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.850
REMARK 3 FREE R VALUE TEST SET COUNT : 1824
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 46.0000 - 4.2600 1.00 4068 163 0.1717 0.1850
REMARK 3 2 4.2500 - 3.3800 1.00 3884 157 0.1683 0.2043
REMARK 3 3 3.3800 - 2.9500 1.00 3855 155 0.2062 0.2729
REMARK 3 4 2.9500 - 2.6800 1.00 3830 152 0.2117 0.2339
REMARK 3 5 2.6800 - 2.4900 1.00 3810 154 0.2201 0.2347
REMARK 3 6 2.4900 - 2.3400 1.00 3816 153 0.2264 0.2438
REMARK 3 7 2.3400 - 2.2200 1.00 3780 152 0.2367 0.2435
REMARK 3 8 2.2200 - 2.1300 1.00 3776 153 0.2558 0.2868
REMARK 3 9 2.1300 - 2.0500 1.00 3779 152 0.2955 0.2805
REMARK 3 10 2.0500 - 1.9800 0.99 3732 151 0.3403 0.3438
REMARK 3 11 1.9800 - 1.9100 0.88 3327 125 0.3950 0.3965
REMARK 3 12 1.9100 - 1.8600 0.64 2407 94 0.4245 0.4026
REMARK 3 13 1.8600 - 1.8100 0.40 1509 63 0.4451 0.4074
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.276
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.587
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 38.95
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.60
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.011 3712
REMARK 3 ANGLE : 0.997 5023
REMARK 3 CHIRALITY : 0.054 527
REMARK 3 PLANARITY : 0.007 661
REMARK 3 DIHEDRAL : 20.248 1393
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 538 )
REMARK 3 ORIGIN FOR THE GROUP (A): 64.5869 32.1534 50.2256
REMARK 3 T TENSOR
REMARK 3 T11: 0.4657 T22: 0.3976
REMARK 3 T33: 0.4761 T12: 0.0722
REMARK 3 T13: -0.0739 T23: 0.0018
REMARK 3 L TENSOR
REMARK 3 L11: 0.1076 L22: 2.0560
REMARK 3 L33: 3.6160 L12: -0.0393
REMARK 3 L13: -0.8694 L23: 2.6511
REMARK 3 S TENSOR
REMARK 3 S11: 0.2863 S12: 0.0273 S13: 0.0132
REMARK 3 S21: 0.0342 S22: -0.0738 S23: 0.0209
REMARK 3 S31: -0.0587 S32: -0.0588 S33: -0.1744
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 539 THROUGH 758 )
REMARK 3 ORIGIN FOR THE GROUP (A): 53.0379 19.4447 16.4975
REMARK 3 T TENSOR
REMARK 3 T11: 0.2476 T22: 0.3157
REMARK 3 T33: 0.2705 T12: -0.0627
REMARK 3 T13: 0.0125 T23: 0.0321
REMARK 3 L TENSOR
REMARK 3 L11: 2.8757 L22: 1.4332
REMARK 3 L33: 3.5657 L12: -0.2210
REMARK 3 L13: 1.8477 L23: -0.1219
REMARK 3 S TENSOR
REMARK 3 S11: 0.0288 S12: -0.4275 S13: -0.2404
REMARK 3 S21: 0.1567 S22: 0.1259 S23: 0.0231
REMARK 3 S31: 0.3035 S32: -0.6221 S33: -0.0878
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 103 )
REMARK 3 ORIGIN FOR THE GROUP (A): 59.5639 25.3314 23.0991
REMARK 3 T TENSOR
REMARK 3 T11: 0.3735 T22: 0.4693
REMARK 3 T33: 0.4106 T12: 0.0367
REMARK 3 T13: -0.0312 T23: -0.0094
REMARK 3 L TENSOR
REMARK 3 L11: 5.6992 L22: 4.6321
REMARK 3 L33: 3.6712 L12: -1.2510
REMARK 3 L13: 2.0470 L23: 1.1913
REMARK 3 S TENSOR
REMARK 3 S11: -0.1919 S12: 0.4114 S13: 0.1799
REMARK 3 S21: 0.0936 S22: -0.1299 S23: 0.0007
REMARK 3 S31: -0.1488 S32: 0.0710 S33: -0.0386
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 108 )
REMARK 3 ORIGIN FOR THE GROUP (A): 63.4262 23.5798 30.8509
REMARK 3 T TENSOR
REMARK 3 T11: 0.4401 T22: 0.4812
REMARK 3 T33: 0.4127 T12: 0.0595
REMARK 3 T13: -0.1038 T23: 0.0143
REMARK 3 L TENSOR
REMARK 3 L11: 0.7197 L22: 0.6478
REMARK 3 L33: 3.0115 L12: -0.1013
REMARK 3 L13: 0.7662 L23: 0.9490
REMARK 3 S TENSOR
REMARK 3 S11: 0.3479 S12: -0.0303 S13: -0.3114
REMARK 3 S21: 0.2752 S22: 0.1439 S23: 0.0361
REMARK 3 S31: 0.3007 S32: -0.1502 S33: -0.4812
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 113 )
REMARK 3 ORIGIN FOR THE GROUP (A): 57.1554 30.0087 33.4859
REMARK 3 T TENSOR
REMARK 3 T11: 0.5636 T22: 0.7759
REMARK 3 T33: 0.4503 T12: 0.0976
REMARK 3 T13: -0.0385 T23: -0.1289
REMARK 3 L TENSOR
REMARK 3 L11: 0.3632 L22: 0.3160
REMARK 3 L33: 6.7356 L12: 0.1033
REMARK 3 L13: -1.4278 L23: -0.8814
REMARK 3 S TENSOR
REMARK 3 S11: 0.2453 S12: -0.0486 S13: 0.6145
REMARK 3 S21: 0.2332 S22: 0.0640 S23: 0.0360
REMARK 3 S31: -0.0833 S32: -0.0891 S33: -0.1715
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 116 )
REMARK 3 ORIGIN FOR THE GROUP (A): 49.5645 34.8628 42.4260
REMARK 3 T TENSOR
REMARK 3 T11: 0.9795 T22: 1.0398
REMARK 3 T33: 0.8553 T12: 0.2659
REMARK 3 T13: 0.1541 T23: -0.4331
REMARK 3 L TENSOR
REMARK 3 L11: 0.6949 L22: 0.3333
REMARK 3 L33: 1.1155 L12: -0.0214
REMARK 3 L13: -0.0609 L23: -0.2014
REMARK 3 S TENSOR
REMARK 3 S11: 0.0062 S12: -0.0002 S13: 0.0297
REMARK 3 S21: 0.3585 S22: 0.0755 S23: -0.0130
REMARK 3 S31: 0.0767 S32: 0.2184 S33: -0.0679
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6Z6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAY-20.
REMARK 100 THE DEPOSITION ID IS D_1292108847.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 14-MAY-20
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I03
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97628
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2
REMARK 200 DATA SCALING SOFTWARE : XIA2
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51780
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810
REMARK 200 RESOLUTION RANGE LOW (A) : 46.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 13.00
REMARK 200 R MERGE (I) : 0.18000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 12.10
REMARK 200 R MERGE FOR SHELL (I) : 5.80900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.100
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5JTC
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 54.39
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES SODIUM, 200 MM AMMONIUM
REMARK 280 CHLORIDE, 20% W/V PEG 6000, 1 MM MANGANESE CHLORIDE, 2 MM 3-
REMARK 280 ETHYL-2-OXOGLUTARATE, 18 MG/ML PROTEIN, PH 7.0, VAPOR DIFFUSION,
REMARK 280 SITTING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.81000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.35050
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.68550
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.35050
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.81000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.68550
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 19670 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ASP B 86
REMARK 465 GLY B 87
REMARK 465 ASP B 88
REMARK 465 GLN B 89
REMARK 465 SER B 90
REMARK 465 GLU B 91
REMARK 465 THR B 92
REMARK 465 SER B 93
REMARK 465 PRO B 94
REMARK 465 SER B 95
REMARK 465 GLN B 96
REMARK 465 ASN B 97
REMARK 465 GLN B 98
REMARK 465 GLU B 117
REMARK 465 GLY B 118
REMARK 465 LYS B 119
REMARK 465 ASN B 120
REMARK 465 SER B 121
REMARK 465 GLU B 122
REMARK 465 LEU B 123
REMARK 465 PHE B 124
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 330 CG CD CE NZ
REMARK 470 LYS A 336 CE NZ
REMARK 470 LYS A 353 CE NZ
REMARK 470 LYS A 356 CE NZ
REMARK 470 LYS A 391 NZ
REMARK 470 LYS A 541 CD CE NZ
REMARK 470 LYS A 545 CG CD CE NZ
REMARK 470 LYS A 552 CE NZ
REMARK 470 LYS A 579 CD CE NZ
REMARK 470 LYS A 607 CE NZ
REMARK 470 LYS A 609 CD CE NZ
REMARK 470 LYS A 653 CD CE NZ
REMARK 470 LYS A 697 CG CD CE NZ
REMARK 470 LEU B 113 CG CD1 CD2
REMARK 470 GLU B 114 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 1104 O HOH A 1305 1.85
REMARK 500 O HOH A 1297 O HOH A 1340 1.86
REMARK 500 O HOH A 1235 O HOH A 1273 1.96
REMARK 500 O HOH A 1237 O HOH A 1305 1.96
REMARK 500 O HOH A 1237 O HOH A 1326 1.99
REMARK 500 O HOH A 1324 O HOH B 212 2.01
REMARK 500 O HOH A 1260 O HOH B 209 2.02
REMARK 500 O HOH A 1304 O HOH A 1340 2.03
REMARK 500 O HOH A 1209 O HOH A 1318 2.07
REMARK 500 O HOH A 1260 O HOH B 210 2.08
REMARK 500 O HOH A 1209 O HOH A 1351 2.13
REMARK 500 O HOH A 1265 O HOH A 1273 2.18
REMARK 500 O HOH A 1225 O HOH A 1317 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 1265 O HOH A 1327 4555 1.78
REMARK 500 O HOH A 1165 O HOH A 1314 4455 2.14
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 TYR A 583 48.26 -97.99
REMARK 500 CYS A 660 90.93 -67.86
REMARK 500 ARG A 661 0.20 -69.62
REMARK 500 LEU A 693 -56.70 -121.09
REMARK 500 ALA A 705 -114.39 49.94
REMARK 500 LYS B 102 -67.07 -101.95
REMARK 500 LYS B 102 -67.97 -101.95
REMARK 500 GLU B 114 47.18 -145.46
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MN A1002 MN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 679 NE2
REMARK 620 2 HIS A 725 NE2 87.6
REMARK 620 3 QA8 A1003 O09 92.0 102.2
REMARK 620 4 QA8 A1003 O12 166.8 101.7 77.0
REMARK 620 5 HOH A1135 O 104.2 93.0 158.3 84.8
REMARK 620 N 1 2 3 4
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1001
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 1002
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue QA8 A 1003
DBREF 6Z6Q A 330 758 UNP Q12797 ASPH_HUMAN 330 758
DBREF 6Z6Q B 86 124 UNP P00742 FA10_HUMAN 86 124
SEQADV 6Z6Q SER B 90 UNP P00742 CYS 90 ENGINEERED MUTATION
SEQADV 6Z6Q SER B 95 UNP P00742 CYS 95 ENGINEERED MUTATION
SEQADV 6Z6Q SER B 112 UNP P00742 CYS 112 ENGINEERED MUTATION
SEQADV 6Z6Q SER B 121 UNP P00742 CYS 121 ENGINEERED MUTATION
SEQRES 1 A 429 LYS PRO LYS LEU LEU ASN LYS PHE ASP LYS THR ILE LYS
SEQRES 2 A 429 ALA GLU LEU ASP ALA ALA GLU LYS LEU ARG LYS ARG GLY
SEQRES 3 A 429 LYS ILE GLU GLU ALA VAL ASN ALA PHE LYS GLU LEU VAL
SEQRES 4 A 429 ARG LYS TYR PRO GLN SER PRO ARG ALA ARG TYR GLY LYS
SEQRES 5 A 429 ALA GLN CYS GLU ASP ASP LEU ALA GLU LYS ARG ARG SER
SEQRES 6 A 429 ASN GLU VAL LEU ARG GLY ALA ILE GLU THR TYR GLN GLU
SEQRES 7 A 429 VAL ALA SER LEU PRO ASP VAL PRO ALA ASP LEU LEU LYS
SEQRES 8 A 429 LEU SER LEU LYS ARG ARG SER ASP ARG GLN GLN PHE LEU
SEQRES 9 A 429 GLY HIS MET ARG GLY SER LEU LEU THR LEU GLN ARG LEU
SEQRES 10 A 429 VAL GLN LEU PHE PRO ASN ASP THR SER LEU LYS ASN ASP
SEQRES 11 A 429 LEU GLY VAL GLY TYR LEU LEU ILE GLY ASP ASN ASP ASN
SEQRES 12 A 429 ALA LYS LYS VAL TYR GLU GLU VAL LEU SER VAL THR PRO
SEQRES 13 A 429 ASN ASP GLY PHE ALA LYS VAL HIS TYR GLY PHE ILE LEU
SEQRES 14 A 429 LYS ALA GLN ASN LYS ILE ALA GLU SER ILE PRO TYR LEU
SEQRES 15 A 429 LYS GLU GLY ILE GLU SER GLY ASP PRO GLY THR ASP ASP
SEQRES 16 A 429 GLY ARG PHE TYR PHE HIS LEU GLY ASP ALA MET GLN ARG
SEQRES 17 A 429 VAL GLY ASN LYS GLU ALA TYR LYS TRP TYR GLU LEU GLY
SEQRES 18 A 429 HIS LYS ARG GLY HIS PHE ALA SER VAL TRP GLN ARG SER
SEQRES 19 A 429 LEU TYR ASN VAL ASN GLY LEU LYS ALA GLN PRO TRP TRP
SEQRES 20 A 429 THR PRO LYS GLU THR GLY TYR THR GLU LEU VAL LYS SER
SEQRES 21 A 429 LEU GLU ARG ASN TRP LYS LEU ILE ARG ASP GLU GLY LEU
SEQRES 22 A 429 ALA VAL MET ASP LYS ALA LYS GLY LEU PHE LEU PRO GLU
SEQRES 23 A 429 ASP GLU ASN LEU ARG GLU LYS GLY ASP TRP SER GLN PHE
SEQRES 24 A 429 THR LEU TRP GLN GLN GLY ARG ARG ASN GLU ASN ALA CYS
SEQRES 25 A 429 LYS GLY ALA PRO LYS THR CYS THR LEU LEU GLU LYS PHE
SEQRES 26 A 429 PRO GLU THR THR GLY CYS ARG ARG GLY GLN ILE LYS TYR
SEQRES 27 A 429 SER ILE MET HIS PRO GLY THR HIS VAL TRP PRO HIS THR
SEQRES 28 A 429 GLY PRO THR ASN CYS ARG LEU ARG MET HIS LEU GLY LEU
SEQRES 29 A 429 VAL ILE PRO LYS GLU GLY CYS LYS ILE ARG CYS ALA ASN
SEQRES 30 A 429 GLU THR LYS THR TRP GLU GLU GLY LYS VAL LEU ILE PHE
SEQRES 31 A 429 ASP ASP SER PHE GLU HIS GLU VAL TRP GLN ASP ALA SER
SEQRES 32 A 429 SER PHE ARG LEU ILE PHE ILE VAL ASP VAL TRP HIS PRO
SEQRES 33 A 429 GLU LEU THR PRO GLN GLN ARG ARG SER LEU PRO ALA ILE
SEQRES 1 B 39 ASP GLY ASP GLN SER GLU THR SER PRO SER GLN ASN GLN
SEQRES 2 B 39 GLY LYS CYS LYS ASP GLY LEU GLY GLU TYR THR CYS THR
SEQRES 3 B 39 SER LEU GLU GLY PHE GLU GLY LYS ASN SER GLU LEU PHE
HET GOL A1001 14
HET MN A1002 1
HET QA8 A1003 20
HETNAM GOL GLYCEROL
HETNAM MN MANGANESE (II) ION
HETNAM QA8 (3~{R})-3-ETHYL-2-OXIDANYLIDENE-PENTANEDIOIC ACID
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
HETSYN QA8 3-ETHYL-2-OXOGLUTARATE
FORMUL 3 GOL C3 H8 O3
FORMUL 4 MN MN 2+
FORMUL 5 QA8 C7 H10 O5
FORMUL 6 HOH *268(H2 O)
HELIX 1 AA1 ASN A 335 THR A 340 1 6
HELIX 2 AA2 ILE A 341 ARG A 354 1 14
HELIX 3 AA3 LYS A 356 TYR A 371 1 16
HELIX 4 AA4 SER A 374 ARG A 393 1 20
HELIX 5 AA5 SER A 394 LEU A 411 1 18
HELIX 6 AA6 PRO A 415 GLY A 434 1 20
HELIX 7 AA7 HIS A 435 PHE A 450 1 16
HELIX 8 AA8 ASP A 453 ILE A 467 1 15
HELIX 9 AA9 ASP A 469 THR A 484 1 16
HELIX 10 AB1 ASP A 487 GLN A 501 1 15
HELIX 11 AB2 LYS A 503 GLY A 518 1 16
HELIX 12 AB3 ASP A 524 VAL A 538 1 15
HELIX 13 AB4 GLU A 542 ARG A 553 1 12
HELIX 14 AB5 THR A 577 GLY A 582 1 6
HELIX 15 AB6 TYR A 583 ASN A 593 1 11
HELIX 16 AB7 ASN A 593 ALA A 608 1 16
HELIX 17 AB8 LYS A 609 PHE A 612 5 4
HELIX 18 AB9 ASN A 637 ALA A 644 1 8
HELIX 19 AC1 ALA A 644 GLU A 652 1 9
HELIX 20 AC2 PHE A 654 GLY A 659 1 6
HELIX 21 AC3 THR A 748 LEU A 755 1 8
SHEET 1 AA1 3 LEU A 613 PRO A 614 0
SHEET 2 AA1 3 TRP A 625 GLN A 632 -1 O GLN A 627 N LEU A 613
SHEET 3 AA1 3 ARG A 635 ARG A 636 -1 O ARG A 635 N GLN A 632
SHEET 1 AA2 6 LEU A 613 PRO A 614 0
SHEET 2 AA2 6 TRP A 625 GLN A 632 -1 O GLN A 627 N LEU A 613
SHEET 3 AA2 6 GLN A 664 MET A 670 -1 O ILE A 665 N LEU A 630
SHEET 4 AA2 6 ARG A 735 TRP A 743 -1 O ILE A 739 N LYS A 666
SHEET 5 AA2 6 ARG A 686 VAL A 694 -1 N LEU A 691 O PHE A 738
SHEET 6 AA2 6 VAL A 716 PHE A 719 -1 O PHE A 719 N ARG A 688
SHEET 1 AA3 5 ARG A 620 LYS A 622 0
SHEET 2 AA3 5 THR A 674 HIS A 679 -1 O HIS A 675 N GLU A 621
SHEET 3 AA3 5 HIS A 725 GLN A 729 -1 O VAL A 727 N VAL A 676
SHEET 4 AA3 5 CYS A 700 CYS A 704 -1 N ARG A 703 O GLU A 726
SHEET 5 AA3 5 GLU A 707 LYS A 709 -1 O LYS A 709 N ILE A 702
SSBOND 1 CYS A 641 CYS A 648 1555 1555 2.03
SSBOND 2 CYS B 101 CYS B 110 1555 1555 2.01
LINK NE2 HIS A 679 MN MN A1002 1555 1555 2.31
LINK NE2 HIS A 725 MN MN A1002 1555 1555 2.16
LINK MN MN A1002 O09 QA8 A1003 1555 1555 1.89
LINK MN MN A1002 O12 QA8 A1003 1555 1555 2.22
LINK MN MN A1002 O HOH A1135 1555 1555 2.01
SITE 1 AC1 2 PRO A 509 GLU A 513
SITE 1 AC2 5 HIS A 679 HIS A 725 QA8 A1003 HOH A1135
SITE 2 AC2 5 ASP B 103
SITE 1 AC3 15 TRP A 625 SER A 668 MET A 670 VAL A 676
SITE 2 AC3 15 HIS A 679 ARG A 688 HIS A 690 PHE A 719
SITE 3 AC3 15 HIS A 725 VAL A 727 ARG A 735 ILE A 737
SITE 4 AC3 15 MN A1002 HOH A1135 ASP B 103
CRYST1 49.620 91.371 122.701 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020153 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010944 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008150 0.00000