HEADER MEMBRANE PROTEIN 30-MAY-20 6Z7C TITLE VARIANT SURFACE GLYCOPROTEIN VSGSUR MUTANT H122A COMPND MOL_ID: 1; COMPND 2 MOLECULE: VARIANT SURFACE GLYCOPROTEIN SUR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI RHODESIENSE; SOURCE 3 ORGANISM_TAXID: 31286; SOURCE 4 GENE: VSGSUR; SOURCE 5 EXPRESSION_SYSTEM: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 5702 KEYWDS VARIANT SURFACE GLYCOPROTEIN SURAMIN TRYPANOSOMIASIS DRUG RESISTANCE KEYWDS 2 GLYCOSYLATION VSG, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.P.ZEELEN,M.STRAATEN VAN,C.E.STEBBINS REVDAT 2 24-JAN-24 6Z7C 1 REMARK REVDAT 1 17-MAR-21 6Z7C 0 JRNL AUTH J.ZEELEN,M.VAN STRAATEN,J.VERDI,A.HEMPELMANN,H.HASHEMI, JRNL AUTH 2 K.PEREZ,P.D.JEFFREY,S.HALG,N.WIEDEMAR,P.MASER, JRNL AUTH 3 F.N.PAPAVASILIOU,C.E.STEBBINS JRNL TITL STRUCTURE OF TRYPANOSOME COAT PROTEIN VSGSUR AND FUNCTION IN JRNL TITL 2 SURAMIN RESISTANCE. JRNL REF NAT MICROBIOL V. 6 392 2021 JRNL REFN ESSN 2058-5276 JRNL PMID 33462435 JRNL DOI 10.1038/S41564-020-00844-1 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.9 REMARK 3 NUMBER OF REFLECTIONS : 44607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.2500 - 4.1300 1.00 3462 204 0.1883 0.2020 REMARK 3 2 4.1300 - 3.2800 1.00 3312 169 0.1701 0.1991 REMARK 3 3 3.2800 - 2.8600 1.00 3263 168 0.1973 0.2260 REMARK 3 4 2.8600 - 2.6000 0.99 3237 165 0.1928 0.2376 REMARK 3 5 2.6000 - 2.4100 0.99 3223 175 0.1825 0.2226 REMARK 3 6 2.4100 - 2.2700 0.99 3186 175 0.1716 0.2250 REMARK 3 7 2.2700 - 2.1600 0.99 3188 162 0.1698 0.1768 REMARK 3 8 2.1600 - 2.0600 0.98 3147 175 0.1662 0.2149 REMARK 3 9 2.0600 - 1.9800 0.99 3192 171 0.1787 0.2056 REMARK 3 10 1.9800 - 1.9200 0.99 3163 167 0.2042 0.2687 REMARK 3 11 1.9200 - 1.8600 0.98 3135 165 0.2264 0.2493 REMARK 3 12 1.8600 - 1.8000 0.97 3079 175 0.2399 0.2685 REMARK 3 13 1.8000 - 1.7600 0.68 2214 95 0.2642 0.2602 REMARK 3 14 1.7600 - 1.7100 0.31 983 61 0.2528 0.2807 REMARK 3 15 1.7100 - 1.6700 0.12 381 20 0.2600 0.2644 REMARK 3 16 1.6700 - 1.6400 0.06 183 12 0.3218 0.4676 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1433 44.5405 92.7460 REMARK 3 T TENSOR REMARK 3 T11: 0.1874 T22: 0.2570 REMARK 3 T33: 0.1809 T12: -0.0041 REMARK 3 T13: -0.0299 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.5009 L22: 1.1796 REMARK 3 L33: 3.2122 L12: 0.3407 REMARK 3 L13: 0.0532 L23: -0.7565 REMARK 3 S TENSOR REMARK 3 S11: 0.0752 S12: -0.2403 S13: 0.0280 REMARK 3 S21: 0.3491 S22: -0.0991 S23: -0.0827 REMARK 3 S31: -0.1993 S32: 0.2060 S33: 0.0574 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5686 42.6655 93.9788 REMARK 3 T TENSOR REMARK 3 T11: 0.1959 T22: 0.1790 REMARK 3 T33: 0.1483 T12: -0.0171 REMARK 3 T13: -0.0062 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.7935 L22: 1.1712 REMARK 3 L33: 3.3445 L12: 0.3099 REMARK 3 L13: 0.1410 L23: -0.1039 REMARK 3 S TENSOR REMARK 3 S11: 0.1097 S12: -0.2892 S13: 0.0324 REMARK 3 S21: 0.4244 S22: -0.0537 S23: 0.0184 REMARK 3 S31: -0.0505 S32: -0.2818 S33: -0.0686 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3077 31.7254 44.2770 REMARK 3 T TENSOR REMARK 3 T11: 0.3197 T22: 0.2031 REMARK 3 T33: 0.1937 T12: 0.0087 REMARK 3 T13: 0.0022 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.6647 L22: 1.6716 REMARK 3 L33: 3.0198 L12: -0.0745 REMARK 3 L13: 0.9225 L23: 0.5827 REMARK 3 S TENSOR REMARK 3 S11: 0.1627 S12: 0.1225 S13: -0.1049 REMARK 3 S21: -0.4114 S22: -0.0203 S23: -0.0218 REMARK 3 S31: 0.2628 S32: -0.0163 S33: -0.1684 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1005 54.0966 78.8324 REMARK 3 T TENSOR REMARK 3 T11: 0.2008 T22: 0.2442 REMARK 3 T33: 0.2837 T12: -0.0436 REMARK 3 T13: -0.0438 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 6.7716 L22: 2.0566 REMARK 3 L33: 2.3030 L12: -1.2324 REMARK 3 L13: -2.0411 L23: 0.1249 REMARK 3 S TENSOR REMARK 3 S11: 0.0931 S12: -0.5185 S13: 0.5589 REMARK 3 S21: 0.0677 S22: 0.0146 S23: -0.3400 REMARK 3 S31: -0.1401 S32: 0.2664 S33: -0.1057 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5311 38.1119 42.9062 REMARK 3 T TENSOR REMARK 3 T11: 0.2907 T22: 0.1731 REMARK 3 T33: 0.1609 T12: 0.0255 REMARK 3 T13: 0.0500 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.9458 L22: 1.8473 REMARK 3 L33: 3.5564 L12: -0.4223 REMARK 3 L13: -0.4943 L23: 1.1070 REMARK 3 S TENSOR REMARK 3 S11: 0.0925 S12: 0.2326 S13: -0.0105 REMARK 3 S21: -0.5703 S22: -0.0212 S23: -0.1889 REMARK 3 S31: 0.0155 S32: 0.1230 S33: -0.0756 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2202 52.7895 76.8173 REMARK 3 T TENSOR REMARK 3 T11: 0.1671 T22: 0.2166 REMARK 3 T33: 0.2370 T12: 0.0353 REMARK 3 T13: 0.0200 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 2.7851 L22: 0.7222 REMARK 3 L33: 1.5496 L12: -0.5425 REMARK 3 L13: 1.6891 L23: -0.9279 REMARK 3 S TENSOR REMARK 3 S11: -0.0694 S12: -0.3639 S13: 0.0880 REMARK 3 S21: 0.1142 S22: 0.0593 S23: 0.1275 REMARK 3 S31: -0.1765 S32: -0.3599 S33: 0.0187 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 303 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2840 51.7084 107.2579 REMARK 3 T TENSOR REMARK 3 T11: 0.5553 T22: 0.4602 REMARK 3 T33: 0.2589 T12: -0.1343 REMARK 3 T13: -0.0311 T23: 0.0673 REMARK 3 L TENSOR REMARK 3 L11: 1.7872 L22: 1.4221 REMARK 3 L33: 1.9082 L12: 0.2066 REMARK 3 L13: 1.0093 L23: -0.4410 REMARK 3 S TENSOR REMARK 3 S11: 0.2049 S12: -0.0946 S13: 0.0093 REMARK 3 S21: 0.2835 S22: -0.2090 S23: 0.1768 REMARK 3 S31: -1.1554 S32: 0.4103 S33: 0.1605 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 323 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2310 47.0921 119.9432 REMARK 3 T TENSOR REMARK 3 T11: 0.8005 T22: 0.5353 REMARK 3 T33: 0.3116 T12: -0.2777 REMARK 3 T13: -0.1422 T23: 0.0556 REMARK 3 L TENSOR REMARK 3 L11: 2.0484 L22: 1.5023 REMARK 3 L33: 2.5152 L12: 0.4584 REMARK 3 L13: -0.3315 L23: -0.3498 REMARK 3 S TENSOR REMARK 3 S11: 0.5615 S12: -0.6198 S13: 0.3061 REMARK 3 S21: 1.0985 S22: -0.6125 S23: -0.3585 REMARK 3 S31: -0.5563 S32: 0.4622 S33: 0.1536 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 388 THROUGH 409 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0947 28.8431 115.7657 REMARK 3 T TENSOR REMARK 3 T11: 0.5552 T22: 0.5418 REMARK 3 T33: 0.5011 T12: -0.0645 REMARK 3 T13: -0.1606 T23: 0.1571 REMARK 3 L TENSOR REMARK 3 L11: 1.3846 L22: 3.9361 REMARK 3 L33: 4.3406 L12: 2.2819 REMARK 3 L13: -0.5614 L23: -0.0709 REMARK 3 S TENSOR REMARK 3 S11: 0.3800 S12: -0.1502 S13: -0.6915 REMARK 3 S21: 0.6992 S22: -0.4700 S23: -1.0468 REMARK 3 S31: 0.3186 S32: -0.0881 S33: 0.2309 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Z7C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292108945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75184 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 65.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 6Z79 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19-24 % PEG 400 100 MM TEA/HCL PH=7.5 REMARK 280 10 % (V/V) ISOPROPANOL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 23.47250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.45950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.47250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.45950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 70.91900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 872 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 878 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 926 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ALA A 3 REMARK 465 VAL A 4 REMARK 465 THR A 5 REMARK 465 ARG A 6 REMARK 465 PHE A 7 REMARK 465 PHE A 8 REMARK 465 ARG A 9 REMARK 465 HIS A 10 REMARK 465 LEU A 11 REMARK 465 ILE A 12 REMARK 465 THR A 13 REMARK 465 LEU A 14 REMARK 465 THR A 15 REMARK 465 ALA A 16 REMARK 465 VAL A 17 REMARK 465 ALA A 18 REMARK 465 LEU A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 PHE A 23 REMARK 465 LEU A 24 REMARK 465 ASP A 25 REMARK 465 THR A 26 REMARK 465 VAL A 27 REMARK 465 ASN A 28 REMARK 465 ALA A 29 REMARK 465 THR A 334 REMARK 465 ASP A 335 REMARK 465 GLU A 336 REMARK 465 PRO A 337 REMARK 465 ALA A 338 REMARK 465 THR A 339 REMARK 465 GLU A 340 REMARK 465 LYS A 341 REMARK 465 GLU A 342 REMARK 465 TYR A 343 REMARK 465 SER A 344 REMARK 465 SER A 345 REMARK 465 ALA A 346 REMARK 465 GLN A 347 REMARK 465 HIS A 348 REMARK 465 THR A 349 REMARK 465 GLN A 350 REMARK 465 ILE A 351 REMARK 465 GLN A 352 REMARK 465 GLY A 384 REMARK 465 GLY A 385 REMARK 465 ALA A 386 REMARK 465 GLU A 387 REMARK 465 GLY A 410 REMARK 465 LYS A 411 REMARK 465 ASN A 412 REMARK 465 LYS A 413 REMARK 465 LEU A 414 REMARK 465 GLN A 415 REMARK 465 HIS A 416 REMARK 465 GLN A 417 REMARK 465 VAL A 418 REMARK 465 LYS A 419 REMARK 465 PRO A 420 REMARK 465 ASP A 421 REMARK 465 THR A 422 REMARK 465 PRO A 423 REMARK 465 LEU A 424 REMARK 465 VAL A 425 REMARK 465 GLU A 426 REMARK 465 SER A 427 REMARK 465 LYS A 428 REMARK 465 LYS A 429 REMARK 465 GLY A 430 REMARK 465 SER A 431 REMARK 465 GLU A 432 REMARK 465 CYS A 433 REMARK 465 GLN A 434 REMARK 465 VAL A 435 REMARK 465 ILE A 436 REMARK 465 GLU A 437 REMARK 465 ASP A 438 REMARK 465 LYS A 439 REMARK 465 GLU A 440 REMARK 465 LYS A 441 REMARK 465 CYS A 442 REMARK 465 LYS A 443 REMARK 465 THR A 444 REMARK 465 THR A 445 REMARK 465 TYR A 446 REMARK 465 GLY A 447 REMARK 465 CYS A 448 REMARK 465 GLU A 449 REMARK 465 LEU A 450 REMARK 465 LYS A 451 REMARK 465 GLY A 452 REMARK 465 ASP A 453 REMARK 465 LYS A 454 REMARK 465 CYS A 455 REMARK 465 VAL A 456 REMARK 465 VAL A 457 REMARK 465 LYS A 458 REMARK 465 MET A 459 REMARK 465 THR A 460 REMARK 465 THR A 461 REMARK 465 LYS A 462 REMARK 465 GLY A 463 REMARK 465 GLU A 464 REMARK 465 VAL A 465 REMARK 465 THR A 466 REMARK 465 GLY A 467 REMARK 465 THR A 468 REMARK 465 GLN A 469 REMARK 465 ASN A 470 REMARK 465 THR A 471 REMARK 465 THR A 472 REMARK 465 GLY A 473 REMARK 465 SER A 474 REMARK 465 ASN A 475 REMARK 465 SER A 476 REMARK 465 PHE A 477 REMARK 465 VAL A 478 REMARK 465 ILE A 479 REMARK 465 LYS A 480 REMARK 465 LYS A 481 REMARK 465 ALA A 482 REMARK 465 PRO A 483 REMARK 465 LEU A 484 REMARK 465 LEU A 485 REMARK 465 LEU A 486 REMARK 465 ALA A 487 REMARK 465 PHE A 488 REMARK 465 LEU A 489 REMARK 465 LEU A 490 REMARK 465 PHE A 491 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 353 CG CD OE1 NE2 REMARK 470 LEU A 354 CG CD1 CD2 REMARK 470 GLU A 364 CG CD OE1 OE2 REMARK 470 LYS A 380 CG CD CE NZ REMARK 470 LYS A 382 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 MAN B 4 O5 MAN B 5 2.12 REMARK 500 ND2 ASN A 130 O5 NAG B 1 2.19 REMARK 500 REMARK 500 REMARK: NULL DBREF1 6Z7C A 1 491 UNP A0A291L8F4_TRYBR DBREF2 6Z7C A A0A291L8F4 1 491 SEQADV 6Z7C ALA A 122 UNP A0A291L8F HIS 122 ENGINEERED MUTATION SEQRES 1 A 491 MET GLN ALA VAL THR ARG PHE PHE ARG HIS LEU ILE THR SEQRES 2 A 491 LEU THR ALA VAL ALA LEU LEU ALA ALA PHE LEU ASP THR SEQRES 3 A 491 VAL ASN ALA ALA LYS ASP THR ALA ALA GLY HIS VAL THR SEQRES 4 A 491 THR PRO CYS THR GLU ILE LEU PHE ASP LEU THR LEU ALA SEQRES 5 A 491 LYS HIS TYR GLU ASN GLN ILE GLN ALA ALA GLU SER ALA SEQRES 6 A 491 LEU ASN ARG ASN TYR ALA ALA ILE ARG SER TRP THR LEU SEQRES 7 A 491 LEU GLU ALA MET SER SER ASP GLY ASN ARG GLN ASN ALA SEQRES 8 A 491 TYR THR GLY LEU ILE ALA TYR GLY ILE GLN ILE THR VAL SEQRES 9 A 491 ASN ALA GLU GLN GLU LEU GLN GLY PRO LYS GLN THR LYS SEQRES 10 A 491 LEU ARG ALA ALA ALA ALA LEU ARG HIS ARG ALA ALA ASN SEQRES 11 A 491 LEU SER ALA ALA LEU GLN ILE GLN ALA ALA GLN GLN ALA SEQRES 12 A 491 THR LEU THR LYS PRO THR ALA GLY GLY ALA GLN THR PRO SEQRES 13 A 491 PHE SER GLY ALA THR GLY THR CYS LYS TYR GLU GLY ILE SEQRES 14 A 491 THR ALA THR ALA GLY GLU GLN SER CYS LYS TYR SER THR SEQRES 15 A 491 GLU ASP GLU GLU LYS ILE ASN ALA ALA HIS MET ASN PRO SEQRES 16 A 491 GLU VAL MET THR GLN ILE THR THR ILE GLY ASP LYS TYR SEQRES 17 A 491 LEU THR THR ILE THR LEU ASP ALA ILE ALA GLY SER LYS SEQRES 18 A 491 GLY ASN PRO THR GLN SER SER ALA THR TYR ALA GLU GLN SEQRES 19 A 491 ASP CYS GLN ASP GLY GLY ASN PRO GLY PRO ASN PHE GLY SEQRES 20 A 491 GLY ALA ASN ALA LEU GLY LEU GLN VAL THR LYS LEU GLY SEQRES 21 A 491 THR LYS ALA THR THR GLU LYS THR ASN LEU TYR THR ALA SEQRES 22 A 491 GLY GLY THR GLU CYS GLU HIS GLN PRO GLY ASN GLY PRO SEQRES 23 A 491 GLN LYS THR LYS GLN ARG LEU ALA TYR LEU VAL CYS GLU SEQRES 24 A 491 ALA ASN LYS ALA ALA ILE ILE THR PRO THR ASP LEU GLN SEQRES 25 A 491 THR LEU THR LEU ASP ALA LEU ILE SER ALA PRO GLU MET SEQRES 26 A 491 ALA ALA ILE GLY ASP ALA LEU LEU THR ASP GLU PRO ALA SEQRES 27 A 491 THR GLU LYS GLU TYR SER SER ALA GLN HIS THR GLN ILE SEQRES 28 A 491 GLN GLN LEU LEU LYS LYS ALA TYR GLY GLN THR ASN GLU SEQRES 29 A 491 GLN PHE GLN LYS ASN PHE ILE LYS PRO LEU ALA ALA GLN SEQRES 30 A 491 THR VAL LYS PHE LYS ILE GLY GLY ALA GLU VAL SER ASN SEQRES 31 A 491 THR VAL ALA ALA LEU MET SER SER PRO ASN SER GLY LEU SEQRES 32 A 491 ALA LEU ALA TYR HIS LYS GLY LYS ASN LYS LEU GLN HIS SEQRES 33 A 491 GLN VAL LYS PRO ASP THR PRO LEU VAL GLU SER LYS LYS SEQRES 34 A 491 GLY SER GLU CYS GLN VAL ILE GLU ASP LYS GLU LYS CYS SEQRES 35 A 491 LYS THR THR TYR GLY CYS GLU LEU LYS GLY ASP LYS CYS SEQRES 36 A 491 VAL VAL LYS MET THR THR LYS GLY GLU VAL THR GLY THR SEQRES 37 A 491 GLN ASN THR THR GLY SER ASN SER PHE VAL ILE LYS LYS SEQRES 38 A 491 ALA PRO LEU LEU LEU ALA PHE LEU LEU PHE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET MAN B 6 11 HET MAN B 7 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 4(C6 H12 O6) FORMUL 3 HOH *329(H2 O) HELIX 1 AA1 ALA A 34 VAL A 38 5 5 HELIX 2 AA2 THR A 40 SER A 83 1 44 HELIX 3 AA3 ASP A 85 ALA A 139 1 55 HELIX 4 AA4 SER A 181 ILE A 188 1 8 HELIX 5 AA5 ASN A 189 MET A 193 5 5 HELIX 6 AA6 ASN A 194 MET A 198 5 5 HELIX 7 AA7 ASP A 206 THR A 211 1 6 HELIX 8 AA8 LYS A 288 ALA A 303 1 16 HELIX 9 AA9 ASP A 310 LEU A 314 5 5 HELIX 10 AB1 THR A 315 ALA A 322 1 8 HELIX 11 AB2 GLU A 324 LEU A 333 1 10 HELIX 12 AB3 LEU A 354 GLY A 360 1 7 HELIX 13 AB4 THR A 362 ILE A 371 1 10 HELIX 14 AB5 LYS A 372 GLN A 377 1 6 HELIX 15 AB6 VAL A 392 MET A 396 1 5 HELIX 16 AB7 ASN A 400 LYS A 409 1 10 SHEET 1 AA1 2 ALA A 143 THR A 144 0 SHEET 2 AA1 2 THR A 170 ALA A 171 -1 O THR A 170 N THR A 144 SHEET 1 AA2 2 THR A 149 GLY A 151 0 SHEET 2 AA2 2 THR A 163 LYS A 165 -1 O LYS A 165 N THR A 149 SHEET 1 AA3 2 GLN A 200 ILE A 204 0 SHEET 2 AA3 2 THR A 265 ASN A 269 -1 O GLU A 266 N THR A 203 SHEET 1 AA4 3 LEU A 214 LYS A 221 0 SHEET 2 AA4 3 GLY A 248 LEU A 259 -1 O GLY A 253 N GLY A 219 SHEET 3 AA4 3 CYS A 236 GLY A 240 -1 N CYS A 236 O LEU A 252 SHEET 1 AA5 2 THR A 378 LYS A 380 0 SHEET 2 AA5 2 SER A 389 THR A 391 -1 O ASN A 390 N VAL A 379 SSBOND 1 CYS A 42 CYS A 178 1555 1555 2.06 SSBOND 2 CYS A 164 CYS A 236 1555 1555 2.05 SSBOND 3 CYS A 278 CYS A 298 1555 1555 2.03 LINK ND2 ASN A 130 C1 NAG B 1 1555 1555 1.40 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.36 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.38 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.44 LINK O6 BMA B 3 C1 MAN B 6 1555 1555 1.46 LINK O2 MAN B 4 C1 MAN B 5 1555 1555 1.37 LINK O3 MAN B 6 C1 MAN B 7 1555 1555 1.44 CISPEP 1 THR A 155 PRO A 156 0 2.49 CRYST1 46.945 70.919 130.503 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021302 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007663 0.00000