HEADER MEMBRANE PROTEIN 02-JUN-20 6Z8H TITLE CRYSTAL STRUCTURE OF VARIANT SURFACE GLYCOPROTEIN VSG13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VARIANT SURFACE GLYCOPROTEIN MITAT 1.13; COMPND 3 CHAIN: A, B; COMPND 4 OTHER_DETAILS: GLYCOSYLATED AT N260 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691 KEYWDS VARIANT SURFACE GLYCOPROTEIN, IMMUNE RECOGNITION, IMMUNE EVASION, KEYWDS 2 TRYPANOSOMIASIS, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.E.STEBBINS,A.HEMPELMANN,M.VAN STRAATEN,J.ZEELEN REVDAT 2 24-JAN-24 6Z8H 1 REMARK REVDAT 1 17-MAR-21 6Z8H 0 JRNL AUTH J.ZEELEN,M.VAN STRAATEN,J.VERDI,A.HEMPELMANN,H.HASHEMI, JRNL AUTH 2 K.PEREZ,P.D.JEFFREY,S.HALG,N.WIEDEMAR,P.MASER, JRNL AUTH 3 F.N.PAPAVASILIOU,C.E.STEBBINS JRNL TITL STRUCTURE OF TRYPANOSOME COAT PROTEIN VSGSUR AND FUNCTION IN JRNL TITL 2 SURAMIN RESISTANCE. JRNL REF NAT MICROBIOL V. 6 392 2021 JRNL REFN ESSN 2058-5276 JRNL PMID 33462435 JRNL DOI 10.1038/S41564-020-00844-1 REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 155680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1400 - 3.1600 0.98 13156 140 0.1891 0.2136 REMARK 3 2 3.1600 - 2.5000 0.99 13136 140 0.2205 0.2005 REMARK 3 3 2.5000 - 2.1900 0.99 13091 139 0.2073 0.2215 REMARK 3 4 2.1900 - 1.9900 0.99 13074 138 0.2202 0.2841 REMARK 3 5 1.9900 - 1.8500 0.98 12894 137 0.2192 0.2752 REMARK 3 6 1.8500 - 1.7400 0.98 12892 136 0.2282 0.2943 REMARK 3 7 1.7400 - 1.6500 0.97 12885 138 0.2318 0.2434 REMARK 3 8 1.6500 - 1.5800 0.96 12669 133 0.2496 0.3074 REMARK 3 9 1.5800 - 1.5200 0.96 12687 135 0.2668 0.2898 REMARK 3 10 1.5200 - 1.4600 0.95 12528 133 0.2967 0.3213 REMARK 3 11 1.4600 - 1.4200 0.96 12595 134 0.3447 0.3483 REMARK 3 12 1.4200 - 1.3800 0.94 12437 133 0.4017 0.4430 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.752 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5435 REMARK 3 ANGLE : 1.123 7364 REMARK 3 CHIRALITY : 0.078 887 REMARK 3 PLANARITY : 0.009 945 REMARK 3 DIHEDRAL : 14.496 2052 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Z8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 155980 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.378 REMARK 200 RESOLUTION RANGE LOW (A) : 48.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6Z8G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8-2.0 M (NH4)2SO4, 100 MM TRIS.CL PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.85850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.17050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.85850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.17050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ARG A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 VAL A 8 REMARK 465 PHE A 9 REMARK 465 PHE A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 ALA A 13 REMARK 465 PHE A 14 REMARK 465 ARG A 15 REMARK 465 TYR A 16 REMARK 465 SER A 17 REMARK 465 THR A 18 REMARK 465 GLU A 19 REMARK 465 GLN A 20 REMARK 465 ALA A 21 REMARK 465 VAL A 22 REMARK 465 GLY A 23 REMARK 465 LEU A 24 REMARK 465 LYS A 25 REMARK 465 GLU A 26 REMARK 465 PRO A 27 REMARK 465 PRO A 170 REMARK 465 GLY A 171 REMARK 465 THR A 173 REMARK 465 ASN A 174 REMARK 465 HIS A 212 REMARK 465 THR A 213 REMARK 465 LYS A 385 REMARK 465 GLN A 386 REMARK 465 GLU A 387 REMARK 465 GLU A 388 REMARK 465 GLN A 389 REMARK 465 SER A 390 REMARK 465 ILE A 391 REMARK 465 LYS A 392 REMARK 465 THR A 393 REMARK 465 SER A 394 REMARK 465 SER A 395 REMARK 465 ASP A 396 REMARK 465 GLU A 397 REMARK 465 ALA A 398 REMARK 465 THR A 399 REMARK 465 ASN A 400 REMARK 465 LYS A 401 REMARK 465 GLU A 402 REMARK 465 CYS A 403 REMARK 465 ASP A 404 REMARK 465 LYS A 405 REMARK 465 HIS A 406 REMARK 465 THR A 407 REMARK 465 ALA A 408 REMARK 465 LYS A 409 REMARK 465 THR A 410 REMARK 465 GLU A 411 REMARK 465 GLY A 412 REMARK 465 GLU A 413 REMARK 465 CYS A 414 REMARK 465 THR A 415 REMARK 465 LYS A 416 REMARK 465 LEU A 417 REMARK 465 GLY A 418 REMARK 465 CYS A 419 REMARK 465 ASP A 420 REMARK 465 TYR A 421 REMARK 465 ASP A 422 REMARK 465 ALA A 423 REMARK 465 GLU A 424 REMARK 465 ASN A 425 REMARK 465 LYS A 426 REMARK 465 LYS A 427 REMARK 465 CYS A 428 REMARK 465 LYS A 429 REMARK 465 PRO A 430 REMARK 465 LYS A 431 REMARK 465 SER A 432 REMARK 465 GLU A 433 REMARK 465 LYS A 434 REMARK 465 GLU A 435 REMARK 465 THR A 436 REMARK 465 THR A 437 REMARK 465 ALA A 438 REMARK 465 ALA A 439 REMARK 465 GLY A 440 REMARK 465 LYS A 441 REMARK 465 LYS A 442 REMARK 465 ASP A 443 REMARK 465 ARG A 444 REMARK 465 ALA A 445 REMARK 465 ALA A 446 REMARK 465 GLY A 447 REMARK 465 GLU A 448 REMARK 465 THR A 449 REMARK 465 GLY A 450 REMARK 465 CYS A 451 REMARK 465 ALA A 452 REMARK 465 LYS A 453 REMARK 465 HIS A 454 REMARK 465 GLY A 455 REMARK 465 THR A 456 REMARK 465 ASP A 457 REMARK 465 LYS A 458 REMARK 465 ASP A 459 REMARK 465 LYS A 460 REMARK 465 CYS A 461 REMARK 465 GLU A 462 REMARK 465 ASN A 463 REMARK 465 ASP A 464 REMARK 465 LYS A 465 REMARK 465 SER A 466 REMARK 465 CYS A 467 REMARK 465 LYS A 468 REMARK 465 TRP A 469 REMARK 465 GLU A 470 REMARK 465 ASN A 471 REMARK 465 ASN A 472 REMARK 465 ALA A 473 REMARK 465 CYS A 474 REMARK 465 LYS A 475 REMARK 465 ASP A 476 REMARK 465 SER A 477 REMARK 465 SER A 478 REMARK 465 ILE A 479 REMARK 465 LEU A 480 REMARK 465 ALA A 481 REMARK 465 THR A 482 REMARK 465 LYS A 483 REMARK 465 LYS A 484 REMARK 465 PHE A 485 REMARK 465 ALA A 486 REMARK 465 LEU A 487 REMARK 465 SER A 488 REMARK 465 MET A 489 REMARK 465 VAL A 490 REMARK 465 SER A 491 REMARK 465 ALA A 492 REMARK 465 ALA A 493 REMARK 465 PHE A 494 REMARK 465 VAL A 495 REMARK 465 THR A 496 REMARK 465 LEU A 497 REMARK 465 LEU A 498 REMARK 465 PHE A 499 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 ARG B 3 REMARK 465 LEU B 4 REMARK 465 GLY B 5 REMARK 465 THR B 6 REMARK 465 ALA B 7 REMARK 465 VAL B 8 REMARK 465 PHE B 9 REMARK 465 PHE B 10 REMARK 465 LEU B 11 REMARK 465 LEU B 12 REMARK 465 ALA B 13 REMARK 465 PHE B 14 REMARK 465 ARG B 15 REMARK 465 TYR B 16 REMARK 465 SER B 17 REMARK 465 THR B 18 REMARK 465 GLU B 19 REMARK 465 GLN B 20 REMARK 465 ALA B 21 REMARK 465 VAL B 22 REMARK 465 GLY B 23 REMARK 465 LEU B 24 REMARK 465 LYS B 25 REMARK 465 GLU B 26 REMARK 465 PRO B 27 REMARK 465 GLY B 141 REMARK 465 GLY B 142 REMARK 465 ALA B 168 REMARK 465 ASP B 169 REMARK 465 PRO B 170 REMARK 465 THR B 173 REMARK 465 ASN B 174 REMARK 465 LYS B 385 REMARK 465 GLN B 386 REMARK 465 GLU B 387 REMARK 465 GLU B 388 REMARK 465 GLN B 389 REMARK 465 SER B 390 REMARK 465 ILE B 391 REMARK 465 LYS B 392 REMARK 465 THR B 393 REMARK 465 SER B 394 REMARK 465 SER B 395 REMARK 465 ASP B 396 REMARK 465 GLU B 397 REMARK 465 ALA B 398 REMARK 465 THR B 399 REMARK 465 ASN B 400 REMARK 465 LYS B 401 REMARK 465 GLU B 402 REMARK 465 CYS B 403 REMARK 465 ASP B 404 REMARK 465 LYS B 405 REMARK 465 HIS B 406 REMARK 465 THR B 407 REMARK 465 ALA B 408 REMARK 465 LYS B 409 REMARK 465 THR B 410 REMARK 465 GLU B 411 REMARK 465 GLY B 412 REMARK 465 GLU B 413 REMARK 465 CYS B 414 REMARK 465 THR B 415 REMARK 465 LYS B 416 REMARK 465 LEU B 417 REMARK 465 GLY B 418 REMARK 465 CYS B 419 REMARK 465 ASP B 420 REMARK 465 TYR B 421 REMARK 465 ASP B 422 REMARK 465 ALA B 423 REMARK 465 GLU B 424 REMARK 465 ASN B 425 REMARK 465 LYS B 426 REMARK 465 LYS B 427 REMARK 465 CYS B 428 REMARK 465 LYS B 429 REMARK 465 PRO B 430 REMARK 465 LYS B 431 REMARK 465 SER B 432 REMARK 465 GLU B 433 REMARK 465 LYS B 434 REMARK 465 GLU B 435 REMARK 465 THR B 436 REMARK 465 THR B 437 REMARK 465 ALA B 438 REMARK 465 ALA B 439 REMARK 465 GLY B 440 REMARK 465 LYS B 441 REMARK 465 LYS B 442 REMARK 465 ASP B 443 REMARK 465 ARG B 444 REMARK 465 ALA B 445 REMARK 465 ALA B 446 REMARK 465 GLY B 447 REMARK 465 GLU B 448 REMARK 465 THR B 449 REMARK 465 GLY B 450 REMARK 465 CYS B 451 REMARK 465 ALA B 452 REMARK 465 LYS B 453 REMARK 465 HIS B 454 REMARK 465 GLY B 455 REMARK 465 THR B 456 REMARK 465 ASP B 457 REMARK 465 LYS B 458 REMARK 465 ASP B 459 REMARK 465 LYS B 460 REMARK 465 CYS B 461 REMARK 465 GLU B 462 REMARK 465 ASN B 463 REMARK 465 ASP B 464 REMARK 465 LYS B 465 REMARK 465 SER B 466 REMARK 465 CYS B 467 REMARK 465 LYS B 468 REMARK 465 TRP B 469 REMARK 465 GLU B 470 REMARK 465 ASN B 471 REMARK 465 ASN B 472 REMARK 465 ALA B 473 REMARK 465 CYS B 474 REMARK 465 LYS B 475 REMARK 465 ASP B 476 REMARK 465 SER B 477 REMARK 465 SER B 478 REMARK 465 ILE B 479 REMARK 465 LEU B 480 REMARK 465 ALA B 481 REMARK 465 THR B 482 REMARK 465 LYS B 483 REMARK 465 LYS B 484 REMARK 465 PHE B 485 REMARK 465 ALA B 486 REMARK 465 LEU B 487 REMARK 465 SER B 488 REMARK 465 MET B 489 REMARK 465 VAL B 490 REMARK 465 SER B 491 REMARK 465 ALA B 492 REMARK 465 ALA B 493 REMARK 465 PHE B 494 REMARK 465 VAL B 495 REMARK 465 THR B 496 REMARK 465 LEU B 497 REMARK 465 LEU B 498 REMARK 465 PHE B 499 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 307 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 NAG A 501 C1 NAG B 501 1.58 REMARK 500 C1 NAG A 502 O4 NAG B 504 1.58 REMARK 500 C1 BMA D 1 O4 NAG B 501 1.61 REMARK 500 C1 BMA C 1 O4 NAG A 502 1.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 127 CE1 HIS A 127 NE2 -0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 155 37.23 -143.60 REMARK 500 LEU A 191 -57.71 69.01 REMARK 500 ALA A 242 72.42 -158.22 REMARK 500 ALA A 254 58.68 -145.71 REMARK 500 LYS A 339 -53.52 -128.27 REMARK 500 LEU B 191 -58.56 73.48 REMARK 500 GLU B 217 -165.16 -128.21 REMARK 500 ALA B 242 73.95 -166.64 REMARK 500 ALA B 254 58.28 -143.97 REMARK 500 LYS B 339 -60.19 -120.74 REMARK 500 SER B 366 57.76 -91.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 243 -12.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BMA C 1 REMARK 610 BMA D 1 REMARK 610 NAG A 502 REMARK 610 NAG B 501 DBREF 6Z8H A 1 499 UNP Q58NS4 Q58NS4_9TRYP 1 499 DBREF 6Z8H B 1 499 UNP Q58NS4 Q58NS4_9TRYP 1 499 SEQRES 1 A 499 MET GLN ARG LEU GLY THR ALA VAL PHE PHE LEU LEU ALA SEQRES 2 A 499 PHE ARG TYR SER THR GLU GLN ALA VAL GLY LEU LYS GLU SEQRES 3 A 499 PRO ASN ALA PRO CYS THR THR ALA CYS GLY CYS LYS SER SEQRES 4 A 499 ARG LEU LEU LYS ARG LEU ASP LEU TYR THR SER LYS TYR SEQRES 5 A 499 ALA ASP GLY ILE ASN ASN GLU ARG GLU ASN SER GLU ALA SEQRES 6 A 499 TYR SER LYS LEU VAL THR ALA ALA LEU ALA ALA VAL PRO SEQRES 7 A 499 THR MET GLN ARG LYS ILE LEU PRO LEU LEU GLY ALA ALA SEQRES 8 A 499 ALA ASP ILE LEU ASP ILE CYS ARG ARG GLU LEU ALA THR SEQRES 9 A 499 ALA ARG PRO LEU VAL GLN ALA ALA ILE SER LYS ILE GLU SEQRES 10 A 499 GLU ALA ALA GLY VAL TYR ASN THR LEU HIS LYS LEU GLU SEQRES 11 A 499 ARG GLY LEU GLY GLU ALA LYS ILE GLU PHE GLY GLY THR SEQRES 12 A 499 ASP LEU ARG LEU THR LYS THR LYS PHE ARG ALA THR SER SEQRES 13 A 499 LEU GLY THR ILE HIS THR ALA ASP CYS PRO ASN ALA ASP SEQRES 14 A 499 PRO GLY GLU THR ASN VAL LYS ILE GLY LEU GLU HIS GLU SEQRES 15 A 499 GLU ASN GLU PRO GLU PRO ALA LYS LEU ILE THR HIS GLY SEQRES 16 A 499 HIS LEU ASP ALA THR CYS ALA SER GLY VAL GLY GLN SER SEQRES 17 A 499 SER SER CYS HIS THR THR ALA VAL GLU ALA ASN THR HIS SEQRES 18 A 499 LEU THR LEU GLY LEU THR PHE SER GLY SER SER LYS ASP SEQRES 19 A 499 GLU SER ALA THR TRP ASN ALA ALA THR ASN ASN LYS ARG SEQRES 20 A 499 ALA ILE HIS SER ASN ASP ALA ASP PHE LEU GLY SER ASN SEQRES 21 A 499 ALA THR VAL ALA HIS GLU ALA LEU LYS ALA ILE ARG SER SEQRES 22 A 499 ALA GLY ALA SER THR PRO CYS SER SER LEU ILE THR ASP SEQRES 23 A 499 PHE ASN ALA VAL ARG ALA ASN PRO LYS PHE LYS LEU MET SEQRES 24 A 499 VAL ILE LYS ALA LEU LEU ASN LYS PRO THR ALA GLU LYS SEQRES 25 A 499 GLU SER ASP ALA PRO ALA ASP GLU VAL ASN ASN ALA ILE SEQRES 26 A 499 ASN SER ALA TYR GLY ARG GLU GLY SER GLU TYR ASN THR SEQRES 27 A 499 LYS THR TRP LYS ASP ILE GLY SER THR ARG ILE PRO LYS SEQRES 28 A 499 ALA ASP PRO PRO GLY GLU LYS THR ASP THR ILE ASP LYS SEQRES 29 A 499 LEU SER SER LEU PRO GLN TRP GLY ASP ALA ILE ALA ARG SEQRES 30 A 499 LEU LEU LEU GLN GLU ILE THR LYS GLN GLU GLU GLN SER SEQRES 31 A 499 ILE LYS THR SER SER ASP GLU ALA THR ASN LYS GLU CYS SEQRES 32 A 499 ASP LYS HIS THR ALA LYS THR GLU GLY GLU CYS THR LYS SEQRES 33 A 499 LEU GLY CYS ASP TYR ASP ALA GLU ASN LYS LYS CYS LYS SEQRES 34 A 499 PRO LYS SER GLU LYS GLU THR THR ALA ALA GLY LYS LYS SEQRES 35 A 499 ASP ARG ALA ALA GLY GLU THR GLY CYS ALA LYS HIS GLY SEQRES 36 A 499 THR ASP LYS ASP LYS CYS GLU ASN ASP LYS SER CYS LYS SEQRES 37 A 499 TRP GLU ASN ASN ALA CYS LYS ASP SER SER ILE LEU ALA SEQRES 38 A 499 THR LYS LYS PHE ALA LEU SER MET VAL SER ALA ALA PHE SEQRES 39 A 499 VAL THR LEU LEU PHE SEQRES 1 B 499 MET GLN ARG LEU GLY THR ALA VAL PHE PHE LEU LEU ALA SEQRES 2 B 499 PHE ARG TYR SER THR GLU GLN ALA VAL GLY LEU LYS GLU SEQRES 3 B 499 PRO ASN ALA PRO CYS THR THR ALA CYS GLY CYS LYS SER SEQRES 4 B 499 ARG LEU LEU LYS ARG LEU ASP LEU TYR THR SER LYS TYR SEQRES 5 B 499 ALA ASP GLY ILE ASN ASN GLU ARG GLU ASN SER GLU ALA SEQRES 6 B 499 TYR SER LYS LEU VAL THR ALA ALA LEU ALA ALA VAL PRO SEQRES 7 B 499 THR MET GLN ARG LYS ILE LEU PRO LEU LEU GLY ALA ALA SEQRES 8 B 499 ALA ASP ILE LEU ASP ILE CYS ARG ARG GLU LEU ALA THR SEQRES 9 B 499 ALA ARG PRO LEU VAL GLN ALA ALA ILE SER LYS ILE GLU SEQRES 10 B 499 GLU ALA ALA GLY VAL TYR ASN THR LEU HIS LYS LEU GLU SEQRES 11 B 499 ARG GLY LEU GLY GLU ALA LYS ILE GLU PHE GLY GLY THR SEQRES 12 B 499 ASP LEU ARG LEU THR LYS THR LYS PHE ARG ALA THR SER SEQRES 13 B 499 LEU GLY THR ILE HIS THR ALA ASP CYS PRO ASN ALA ASP SEQRES 14 B 499 PRO GLY GLU THR ASN VAL LYS ILE GLY LEU GLU HIS GLU SEQRES 15 B 499 GLU ASN GLU PRO GLU PRO ALA LYS LEU ILE THR HIS GLY SEQRES 16 B 499 HIS LEU ASP ALA THR CYS ALA SER GLY VAL GLY GLN SER SEQRES 17 B 499 SER SER CYS HIS THR THR ALA VAL GLU ALA ASN THR HIS SEQRES 18 B 499 LEU THR LEU GLY LEU THR PHE SER GLY SER SER LYS ASP SEQRES 19 B 499 GLU SER ALA THR TRP ASN ALA ALA THR ASN ASN LYS ARG SEQRES 20 B 499 ALA ILE HIS SER ASN ASP ALA ASP PHE LEU GLY SER ASN SEQRES 21 B 499 ALA THR VAL ALA HIS GLU ALA LEU LYS ALA ILE ARG SER SEQRES 22 B 499 ALA GLY ALA SER THR PRO CYS SER SER LEU ILE THR ASP SEQRES 23 B 499 PHE ASN ALA VAL ARG ALA ASN PRO LYS PHE LYS LEU MET SEQRES 24 B 499 VAL ILE LYS ALA LEU LEU ASN LYS PRO THR ALA GLU LYS SEQRES 25 B 499 GLU SER ASP ALA PRO ALA ASP GLU VAL ASN ASN ALA ILE SEQRES 26 B 499 ASN SER ALA TYR GLY ARG GLU GLY SER GLU TYR ASN THR SEQRES 27 B 499 LYS THR TRP LYS ASP ILE GLY SER THR ARG ILE PRO LYS SEQRES 28 B 499 ALA ASP PRO PRO GLY GLU LYS THR ASP THR ILE ASP LYS SEQRES 29 B 499 LEU SER SER LEU PRO GLN TRP GLY ASP ALA ILE ALA ARG SEQRES 30 B 499 LEU LEU LEU GLN GLU ILE THR LYS GLN GLU GLU GLN SER SEQRES 31 B 499 ILE LYS THR SER SER ASP GLU ALA THR ASN LYS GLU CYS SEQRES 32 B 499 ASP LYS HIS THR ALA LYS THR GLU GLY GLU CYS THR LYS SEQRES 33 B 499 LEU GLY CYS ASP TYR ASP ALA GLU ASN LYS LYS CYS LYS SEQRES 34 B 499 PRO LYS SER GLU LYS GLU THR THR ALA ALA GLY LYS LYS SEQRES 35 B 499 ASP ARG ALA ALA GLY GLU THR GLY CYS ALA LYS HIS GLY SEQRES 36 B 499 THR ASP LYS ASP LYS CYS GLU ASN ASP LYS SER CYS LYS SEQRES 37 B 499 TRP GLU ASN ASN ALA CYS LYS ASP SER SER ILE LEU ALA SEQRES 38 B 499 THR LYS LYS PHE ALA LEU SER MET VAL SER ALA ALA PHE SEQRES 39 B 499 VAL THR LEU LEU PHE HET BMA C 1 21 HET MAN C 2 21 HET BMA D 1 21 HET MAN D 2 21 HET NAG A 501 28 HET NAG A 502 28 HET SO4 A 505 5 HET NAG B 501 28 HET NAG B 504 28 HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 2(C6 H12 O6) FORMUL 5 NAG 4(C8 H15 N O6) FORMUL 7 SO4 O4 S 2- FORMUL 10 HOH *421(H2 O) HELIX 1 AA1 THR A 33 ALA A 76 1 44 HELIX 2 AA2 VAL A 77 GLU A 130 1 54 HELIX 3 AA3 THR A 148 THR A 150 5 3 HELIX 4 AA4 GLY A 178 GLU A 185 5 8 HELIX 5 AA5 GLU A 235 ASN A 240 1 6 HELIX 6 AA6 SER A 259 ALA A 274 1 16 HELIX 7 AA7 ASP A 286 ALA A 292 1 7 HELIX 8 AA8 ASN A 293 LEU A 305 1 13 HELIX 9 AA9 LYS A 312 ALA A 316 5 5 HELIX 10 AB1 PRO A 317 GLY A 330 1 14 HELIX 11 AB2 ARG A 331 SER A 334 5 4 HELIX 12 AB3 LYS A 339 SER A 346 1 8 HELIX 13 AB4 SER A 367 THR A 384 1 18 HELIX 14 AB5 THR B 33 ALA B 76 1 44 HELIX 15 AB6 VAL B 77 GLU B 130 1 54 HELIX 16 AB7 THR B 148 THR B 150 5 3 HELIX 17 AB8 GLY B 178 GLU B 185 5 8 HELIX 18 AB9 GLY B 204 SER B 208 5 5 HELIX 19 AC1 GLU B 235 ASN B 240 1 6 HELIX 20 AC2 SER B 259 ALA B 274 1 16 HELIX 21 AC3 ASP B 286 ASN B 293 1 8 HELIX 22 AC4 LYS B 295 LEU B 305 1 11 HELIX 23 AC5 LYS B 312 ALA B 316 5 5 HELIX 24 AC6 PRO B 317 GLY B 330 1 14 HELIX 25 AC7 ARG B 331 SER B 334 5 4 HELIX 26 AC8 LYS B 339 SER B 346 1 8 HELIX 27 AC9 SER B 367 THR B 384 1 18 SHEET 1 AA1 5 PHE A 152 THR A 155 0 SHEET 2 AA1 5 GLU A 135 GLU A 139 -1 N LYS A 137 O ALA A 154 SHEET 3 AA1 5 HIS A 221 SER A 229 -1 O LEU A 222 N ILE A 138 SHEET 4 AA1 5 HIS A 194 ALA A 202 -1 N THR A 200 O THR A 223 SHEET 5 AA1 5 ARG A 247 ASP A 253 -1 O ASN A 252 N GLY A 195 SHEET 1 AA2 2 ARG A 348 LYS A 351 0 SHEET 2 AA2 2 LYS A 358 THR A 361 -1 O ASP A 360 N ILE A 349 SHEET 1 AA3 5 PHE B 152 THR B 155 0 SHEET 2 AA3 5 GLU B 135 GLU B 139 -1 N LYS B 137 O ALA B 154 SHEET 3 AA3 5 HIS B 221 SER B 229 -1 O LEU B 224 N ALA B 136 SHEET 4 AA3 5 HIS B 194 SER B 203 -1 N HIS B 196 O THR B 227 SHEET 5 AA3 5 SER B 209 SER B 210 -1 O SER B 209 N SER B 203 SHEET 1 AA4 5 PHE B 152 THR B 155 0 SHEET 2 AA4 5 GLU B 135 GLU B 139 -1 N LYS B 137 O ALA B 154 SHEET 3 AA4 5 HIS B 221 SER B 229 -1 O LEU B 224 N ALA B 136 SHEET 4 AA4 5 HIS B 194 SER B 203 -1 N HIS B 196 O THR B 227 SHEET 5 AA4 5 ARG B 247 ASP B 253 -1 O ASN B 252 N GLY B 195 SHEET 1 AA5 2 ARG B 348 LYS B 351 0 SHEET 2 AA5 2 LYS B 358 THR B 361 -1 O ASP B 360 N ILE B 349 SSBOND 1 CYS A 31 CYS A 37 1555 1555 2.07 SSBOND 2 CYS A 35 CYS A 165 1555 1555 2.04 SSBOND 3 CYS A 98 CYS A 280 1555 1555 2.02 SSBOND 4 CYS A 201 CYS A 211 1555 1555 2.02 SSBOND 5 CYS B 31 CYS B 37 1555 1555 2.08 SSBOND 6 CYS B 35 CYS B 165 1555 1555 2.03 SSBOND 7 CYS B 98 CYS B 280 1555 1555 2.04 SSBOND 8 CYS B 201 CYS B 211 1555 1555 2.01 LINK ND2 ASN A 260 C1 NAG A 501 1555 1555 1.55 LINK ND2 ASN B 260 C1 NAG B 504 1555 1555 1.60 LINK O6 BMA C 1 C1 MAN C 2 1555 1555 1.48 LINK O6 BMA D 1 C1 MAN D 2 1555 1555 1.43 CRYST1 73.717 68.341 156.903 90.00 92.55 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013565 0.000000 0.000604 0.00000 SCALE2 0.000000 0.014633 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006380 0.00000