HEADER REPLICATION 03-JUN-20 6Z9C TITLE STRUCTURE OF HUMAN POLDIP2, A MULTIFACETED ADAPTOR PROTEIN IN TITLE 2 METABOLISM AND GENOME STABILITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE DELTA-INTERACTING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 38 KDA DNA POLYMERASE DELTA INTERACTION PROTEIN,P38; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLDIP2, PDIP38, POLD4, HSPC017; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3 PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNH-TRXT KEYWDS POLDIP2 PDIP38 MITOCHONDRIA NUCLEUS PRIMPOL DNA POLYMERASE, KEYWDS 2 REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR A.A.KULIK,K.MARUSZCZAK,N.L.M.NABI,R.J.BINGHAM,C.D.O.COOPER REVDAT 4 24-JAN-24 6Z9C 1 REMARK REVDAT 3 02-JUN-21 6Z9C 1 JRNL REVDAT 2 05-MAY-21 6Z9C 1 JRNL REVDAT 1 17-JUN-20 6Z9C 0 JRNL AUTH A.A.KULIK,K.K.MARUSZCZAK,D.C.THOMAS,N.L.A.NABI-ALDRIDGE, JRNL AUTH 2 M.CARR,R.J.BINGHAM,C.D.O.COOPER JRNL TITL CRYSTAL STRUCTURE AND MOLECULAR DYNAMICS OF HUMAN POLDIP2, A JRNL TITL 2 MULTIFACETED ADAPTOR PROTEIN IN METABOLISM AND GENOME JRNL TITL 3 STABILITY. JRNL REF PROTEIN SCI. V. 30 1196 2021 JRNL REFN ESSN 1469-896X JRNL PMID 33884680 JRNL DOI 10.1002/PRO.4085 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 9711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 524 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 702 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3900 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2130 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.66000 REMARK 3 B12 (A**2) : -0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.924 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.390 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.313 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.946 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.844 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2226 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2015 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3023 ; 1.608 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4647 ; 1.178 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 261 ; 9.060 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;30.173 ;19.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 362 ;22.487 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;22.133 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 270 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2486 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 550 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6Z9C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109084. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER IMUS MICROFOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : MULTILAYER MIRRORS REMARK 200 OPTICS : MICROFOCUS SOURCE REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM2 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11561 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.687 REMARK 200 RESOLUTION RANGE LOW (A) : 104.042 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14700 REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 2.04900 REMARK 200 R SYM FOR SHELL (I) : 2.04900 REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 1VBV, 5HDW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE HYDRATE 0.1M REMARK 280 SODIUM CACODYLATE PH 6.5 40% (V/V) PEG 300, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.01067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.50533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.01067 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.50533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 57 REMARK 465 GLU A 58 REMARK 465 GLY A 59 REMARK 465 LYS A 60 REMARK 465 VAL A 61 REMARK 465 LEU A 62 REMARK 465 GLU A 63 REMARK 465 THR A 64 REMARK 465 SER A 109 REMARK 465 ALA A 110 REMARK 465 ALA A 111 REMARK 465 PRO A 112 REMARK 465 GLU A 113 REMARK 465 LYS A 114 REMARK 465 ALA A 115 REMARK 465 GLU A 116 REMARK 465 ASN A 117 REMARK 465 PRO A 118 REMARK 465 ALA A 119 REMARK 465 GLY A 120 REMARK 465 HIS A 121 REMARK 465 GLY A 122 REMARK 465 SER A 123 REMARK 465 LYS A 124 REMARK 465 GLU A 125 REMARK 465 HIS A 145 REMARK 465 ILE A 146 REMARK 465 SER A 147 REMARK 465 GLN A 148 REMARK 465 ARG A 149 REMARK 465 SER A 150 REMARK 465 GLN A 151 REMARK 465 THR A 152 REMARK 465 GLU A 153 REMARK 465 ALA A 154 REMARK 465 VAL A 155 REMARK 465 THR A 156 REMARK 465 PHE A 157 REMARK 465 LEU A 158 REMARK 465 ALA A 159 REMARK 465 ASN A 160 REMARK 465 HIS A 161 REMARK 465 ASP A 162 REMARK 465 ASP A 163 REMARK 465 SER A 164 REMARK 465 ARG A 165 REMARK 465 ALA A 166 REMARK 465 LEU A 167 REMARK 465 GLU A 254 REMARK 465 ALA A 255 REMARK 465 GLN A 256 REMARK 465 ASN A 257 REMARK 465 GLU A 359 REMARK 465 LYS A 360 REMARK 465 THR A 361 REMARK 465 PRO A 362 REMARK 465 PRO A 363 REMARK 465 SER A 364 REMARK 465 GLY A 365 REMARK 465 LEU A 366 REMARK 465 HIS A 367 REMARK 465 TRP A 368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 74 CG OD1 ND2 REMARK 470 GLN A 189 CG CD OE1 NE2 REMARK 470 ASP A 358 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 50 128.61 -171.72 REMARK 500 SER A 53 -55.51 -137.57 REMARK 500 ASN A 55 -92.95 -115.44 REMARK 500 ASP A 106 47.47 -90.84 REMARK 500 ALA A 169 78.00 -109.18 REMARK 500 THR A 187 19.82 -140.04 REMARK 500 HIS A 194 143.48 -170.32 REMARK 500 ASP A 204 103.27 -177.64 REMARK 500 PRO A 210 42.57 -83.16 REMARK 500 GLU A 215 -27.24 71.92 REMARK 500 ARG A 280 -51.25 -122.38 REMARK 500 GLN A 324 57.64 -110.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 78 OE1 REMARK 620 2 ALA A 208 O 98.8 REMARK 620 3 HOH A 519 O 95.3 118.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 DBREF 6Z9C A 51 368 UNP Q9Y2S7 PDIP2_HUMAN 51 368 SEQADV 6Z9C SER A 49 UNP Q9Y2S7 EXPRESSION TAG SEQADV 6Z9C MET A 50 UNP Q9Y2S7 EXPRESSION TAG SEQRES 1 A 320 SER MET LEU SER SER ARG ASN ARG PRO GLU GLY LYS VAL SEQRES 2 A 320 LEU GLU THR VAL GLY VAL PHE GLU VAL PRO LYS GLN ASN SEQRES 3 A 320 GLY LYS TYR GLU THR GLY GLN LEU PHE LEU HIS SER ILE SEQRES 4 A 320 PHE GLY TYR ARG GLY VAL VAL LEU PHE PRO TRP GLN ALA SEQRES 5 A 320 ARG LEU TYR ASP ARG ASP VAL ALA SER ALA ALA PRO GLU SEQRES 6 A 320 LYS ALA GLU ASN PRO ALA GLY HIS GLY SER LYS GLU VAL SEQRES 7 A 320 LYS GLY LYS THR HIS THR TYR TYR GLN VAL LEU ILE ASP SEQRES 8 A 320 ALA ARG ASP CYS PRO HIS ILE SER GLN ARG SER GLN THR SEQRES 9 A 320 GLU ALA VAL THR PHE LEU ALA ASN HIS ASP ASP SER ARG SEQRES 10 A 320 ALA LEU TYR ALA ILE PRO GLY LEU ASP TYR VAL SER HIS SEQRES 11 A 320 GLU ASP ILE LEU PRO TYR THR SER THR ASP GLN VAL PRO SEQRES 12 A 320 ILE GLN HIS GLU LEU PHE GLU ARG PHE LEU LEU TYR ASP SEQRES 13 A 320 GLN THR LYS ALA PRO PRO PHE VAL ALA ARG GLU THR LEU SEQRES 14 A 320 ARG ALA TRP GLN GLU LYS ASN HIS PRO TRP LEU GLU LEU SEQRES 15 A 320 SER ASP VAL HIS ARG GLU THR THR GLU ASN ILE ARG VAL SEQRES 16 A 320 THR VAL ILE PRO PHE TYR MET GLY MET ARG GLU ALA GLN SEQRES 17 A 320 ASN SER HIS VAL TYR TRP TRP ARG TYR CYS ILE ARG LEU SEQRES 18 A 320 GLU ASN LEU ASP SER ASP VAL VAL GLN LEU ARG GLU ARG SEQRES 19 A 320 HIS TRP ARG ILE PHE SER LEU SER GLY THR LEU GLU THR SEQRES 20 A 320 VAL ARG GLY ARG GLY VAL VAL GLY ARG GLU PRO VAL LEU SEQRES 21 A 320 SER LYS GLU GLN PRO ALA PHE GLN TYR SER SER HIS VAL SEQRES 22 A 320 SER LEU GLN ALA SER SER GLY HIS MET TRP GLY THR PHE SEQRES 23 A 320 ARG PHE GLU ARG PRO ASP GLY SER HIS PHE ASP VAL ARG SEQRES 24 A 320 ILE PRO PRO PHE SER LEU GLU SER ASN LYS ASP GLU LYS SEQRES 25 A 320 THR PRO PRO SER GLY LEU HIS TRP HET NA A 401 1 HETNAM NA SODIUM ION FORMUL 2 NA NA 1+ FORMUL 3 HOH *24(H2 O) HELIX 1 AA1 GLU A 195 PHE A 200 1 6 HELIX 2 AA2 GLU A 215 LEU A 228 1 14 HELIX 3 AA3 GLU A 229 SER A 231 5 3 SHEET 1 AA1 9 MET A 50 LEU A 51 0 SHEET 2 AA1 9 ALA A 314 LEU A 323 -1 O GLN A 316 N MET A 50 SHEET 3 AA1 9 TYR A 261 ASN A 271 -1 N LEU A 269 O PHE A 315 SHEET 4 AA1 9 ILE A 241 MET A 252 -1 N ARG A 242 O GLU A 270 SHEET 5 AA1 9 VAL A 233 THR A 238 -1 N HIS A 234 O VAL A 245 SHEET 6 AA1 9 ARG A 91 ASP A 104 1 N TYR A 103 O VAL A 233 SHEET 7 AA1 9 LEU A 82 HIS A 85 -1 N PHE A 83 O GLY A 92 SHEET 8 AA1 9 ILE A 181 THR A 185 -1 O LEU A 182 N LEU A 84 SHEET 9 AA1 9 VAL A 67 PHE A 68 -1 N VAL A 67 O THR A 185 SHEET 1 AA2 8 MET A 50 LEU A 51 0 SHEET 2 AA2 8 ALA A 314 LEU A 323 -1 O GLN A 316 N MET A 50 SHEET 3 AA2 8 TYR A 261 ASN A 271 -1 N LEU A 269 O PHE A 315 SHEET 4 AA2 8 ILE A 241 MET A 252 -1 N ARG A 242 O GLU A 270 SHEET 5 AA2 8 VAL A 233 THR A 238 -1 N HIS A 234 O VAL A 245 SHEET 6 AA2 8 ARG A 91 ASP A 104 1 N TYR A 103 O VAL A 233 SHEET 7 AA2 8 LYS A 129 ILE A 138 -1 O TYR A 133 N TRP A 98 SHEET 8 AA2 8 LEU A 173 SER A 177 -1 O VAL A 176 N TYR A 134 SHEET 1 AA3 2 LEU A 201 TYR A 203 0 SHEET 2 AA3 2 PHE A 211 ALA A 213 -1 O VAL A 212 N LEU A 202 SHEET 1 AA4 3 LEU A 293 ARG A 299 0 SHEET 2 AA4 3 VAL A 277 SER A 288 -1 N TRP A 284 O VAL A 296 SHEET 3 AA4 3 VAL A 307 LEU A 308 -1 O LEU A 308 N VAL A 277 SHEET 1 AA5 4 LEU A 293 ARG A 299 0 SHEET 2 AA5 4 VAL A 277 SER A 288 -1 N TRP A 284 O VAL A 296 SHEET 3 AA5 4 GLY A 328 GLU A 337 -1 O ARG A 335 N ARG A 280 SHEET 4 AA5 4 HIS A 343 LEU A 353 -1 O LEU A 353 N GLY A 328 LINK OE1 GLU A 78 NA NA A 401 1555 1555 2.14 LINK O ALA A 208 NA NA A 401 1555 1555 1.96 LINK NA NA A 401 O HOH A 519 1555 1555 2.47 CISPEP 1 ALA A 208 PRO A 209 0 -16.34 SITE 1 AC1 4 GLU A 78 ALA A 208 GLY A 303 HOH A 519 CRYST1 120.138 120.138 49.516 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008324 0.004806 0.000000 0.00000 SCALE2 0.000000 0.009611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020195 0.00000