HEADER CELL ADHESION 04-JUN-20 6Z9K TITLE CAP DOMAIN OF ENTEROCOCCAL PRGA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRGA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 GENE: PRGA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PROTEASE DOMAIN, CAP DOMAIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR R.P.A.BERNTSSON,A.SCHMITT REVDAT 3 15-MAY-24 6Z9K 1 REMARK REVDAT 2 14-OCT-20 6Z9K 1 JRNL REVDAT 1 16-SEP-20 6Z9K 0 JRNL AUTH A.SCHMITT,H.HIRT,M.A.JARVA,W.S.SUN,J.TER BEEK,G.M.DUNNY, JRNL AUTH 2 R.P.BERNTSSON JRNL TITL ENTEROCOCCAL PRGA EXTENDS FAR OUTSIDE THE CELL AND PROVIDES JRNL TITL 2 SURFACE EXCLUSION TO PROTECT AGAINST UNWANTED CONJUGATION. JRNL REF J.MOL.BIOL. V. 432 5681 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 32860774 JRNL DOI 10.1016/J.JMB.2020.08.018 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 68543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3653 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3755 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 215 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3873 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 646 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : 0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.634 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4002 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3681 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5381 ; 1.760 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8657 ; 1.548 ; 1.593 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 498 ; 5.952 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;39.163 ;26.021 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 786 ;13.546 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 5.597 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 510 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4430 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 720 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 300 A 538 REMARK 3 ORIGIN FOR THE GROUP (A): 92.8520 5.9214 57.2357 REMARK 3 T TENSOR REMARK 3 T11: 0.0170 T22: 0.0546 REMARK 3 T33: 0.0327 T12: -0.0044 REMARK 3 T13: -0.0068 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.7893 L22: 0.4755 REMARK 3 L33: 0.5644 L12: -0.6321 REMARK 3 L13: -0.3416 L23: 0.1203 REMARK 3 S TENSOR REMARK 3 S11: -0.1356 S12: -0.0907 S13: 0.0900 REMARK 3 S21: 0.0488 S22: 0.1188 S23: -0.0412 REMARK 3 S31: 0.0499 S32: -0.0303 S33: 0.0168 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 293 B 541 REMARK 3 ORIGIN FOR THE GROUP (A): 51.7617 7.2795 57.4050 REMARK 3 T TENSOR REMARK 3 T11: 0.0057 T22: 0.0283 REMARK 3 T33: 0.0139 T12: -0.0011 REMARK 3 T13: -0.0010 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.4087 L22: 0.4389 REMARK 3 L33: 0.7722 L12: -0.1314 REMARK 3 L13: 0.0360 L23: 0.1172 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: -0.1355 S13: 0.0171 REMARK 3 S21: 0.0128 S22: 0.0567 S23: -0.0115 REMARK 3 S31: -0.0548 S32: 0.0354 S33: -0.0324 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6Z9K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.078118 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72114 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 45.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 4.907 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.93600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M NA/KPO4, 0.1 M BIS-TRIS PROPANE REMARK 280 PH 6.5, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 17.99900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 293 REMARK 465 THR A 294 REMARK 465 LEU A 295 REMARK 465 ASP A 296 REMARK 465 ASN A 297 REMARK 465 SER A 298 REMARK 465 LYS A 299 REMARK 465 ALA A 539 REMARK 465 SER A 540 REMARK 465 ASN A 541 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 735 O HOH B 964 2.03 REMARK 500 O HOH A 728 O HOH A 803 2.05 REMARK 500 O HOH A 711 O HOH A 949 2.08 REMARK 500 O HOH B 919 O HOH B 960 2.08 REMARK 500 O HOH B 853 O HOH B 901 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 923 O HOH B 1006 2746 2.15 REMARK 500 O HOH A 891 O HOH A 906 1545 2.15 REMARK 500 OG SER A 501 NE2 GLN A 519 1565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 359 21.13 -151.54 REMARK 500 ASP A 469 38.93 -142.52 REMARK 500 SER A 501 34.56 -143.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE B 602 DBREF 6Z9K A 294 541 UNP Q04111 Q04111_ENTFL 294 541 DBREF 6Z9K B 294 541 UNP Q04111 Q04111_ENTFL 294 541 SEQADV 6Z9K MET A 293 UNP Q04111 INITIATING METHIONINE SEQADV 6Z9K MET B 293 UNP Q04111 INITIATING METHIONINE SEQRES 1 A 249 MET THR LEU ASP ASN SER LYS GLU GLU LEU LYS GLY HIS SEQRES 2 A 249 LYS GLY ILE ASN LEU PRO PRO LYS PHE SER ALA ASP TYR SEQRES 3 A 249 ASP THR LYS LEU SER ALA GLU GLU ILE ALA THR LEU GLU SEQRES 4 A 249 LYS THR ALA LEU GLU MET ASN LYS ASN PHE PRO THR SER SEQRES 5 A 249 LYS GLU ASP GLU LYS ASN LYS ASP VAL MET TRP ASP ILE SEQRES 6 A 249 GLN HIS LEU SER ALA ASP GLN LYS LYS GLU LEU SER VAL SEQRES 7 A 249 TYR THR THR GLU LEU LEU ASN ASP VAL ARG LYS LYS LEU SEQRES 8 A 249 GLY LEU SER GLN LEU SER VAL SER ASP GLN SER ILE LYS SEQRES 9 A 249 PHE ALA TRP ASP ILE ALA LYS TYR SER ASP THR GLY GLU SEQRES 10 A 249 TYR MET HIS ASP VAL ILE ALA ILE ASN LYS ALA ALA LYS SEQRES 11 A 249 GLU ASN GLY PHE LYS GLU TYR PRO GLY MET ASN TYR TYR SEQRES 12 A 249 GLU ASN LEU GLY GLY GLY TYR TYR GLU THR GLU ASN GLY SEQRES 13 A 249 LYS VAL SER LYS TYR THR LEU GLN GLU SER ILE ARG LYS SEQRES 14 A 249 MET LEU VAL ASN MET LEU PHE ASP ASP GLY ARG LEU GLY SEQRES 15 A 249 TYR SER HIS LEU HIS SER LEU LEU GLN ASP GLY LYS THR SEQRES 16 A 249 ALA LEU GLY VAL SER LEU SER GLY GLU LYS ASN SER ILE SEQRES 17 A 249 SER PRO LYS ILE HIS ILE ILE SER TYR GLY LYS GLU LYS SEQRES 18 A 249 LEU GLU ASP SER SER GLN TYR GLN ASN GLY GLU VAL ALA SEQRES 19 A 249 SER MET LYS SER LYS GLU GLU LEU GLN GLN GLU ILE ALA SEQRES 20 A 249 SER ASN SEQRES 1 B 249 MET THR LEU ASP ASN SER LYS GLU GLU LEU LYS GLY HIS SEQRES 2 B 249 LYS GLY ILE ASN LEU PRO PRO LYS PHE SER ALA ASP TYR SEQRES 3 B 249 ASP THR LYS LEU SER ALA GLU GLU ILE ALA THR LEU GLU SEQRES 4 B 249 LYS THR ALA LEU GLU MET ASN LYS ASN PHE PRO THR SER SEQRES 5 B 249 LYS GLU ASP GLU LYS ASN LYS ASP VAL MET TRP ASP ILE SEQRES 6 B 249 GLN HIS LEU SER ALA ASP GLN LYS LYS GLU LEU SER VAL SEQRES 7 B 249 TYR THR THR GLU LEU LEU ASN ASP VAL ARG LYS LYS LEU SEQRES 8 B 249 GLY LEU SER GLN LEU SER VAL SER ASP GLN SER ILE LYS SEQRES 9 B 249 PHE ALA TRP ASP ILE ALA LYS TYR SER ASP THR GLY GLU SEQRES 10 B 249 TYR MET HIS ASP VAL ILE ALA ILE ASN LYS ALA ALA LYS SEQRES 11 B 249 GLU ASN GLY PHE LYS GLU TYR PRO GLY MET ASN TYR TYR SEQRES 12 B 249 GLU ASN LEU GLY GLY GLY TYR TYR GLU THR GLU ASN GLY SEQRES 13 B 249 LYS VAL SER LYS TYR THR LEU GLN GLU SER ILE ARG LYS SEQRES 14 B 249 MET LEU VAL ASN MET LEU PHE ASP ASP GLY ARG LEU GLY SEQRES 15 B 249 TYR SER HIS LEU HIS SER LEU LEU GLN ASP GLY LYS THR SEQRES 16 B 249 ALA LEU GLY VAL SER LEU SER GLY GLU LYS ASN SER ILE SEQRES 17 B 249 SER PRO LYS ILE HIS ILE ILE SER TYR GLY LYS GLU LYS SEQRES 18 B 249 LEU GLU ASP SER SER GLN TYR GLN ASN GLY GLU VAL ALA SEQRES 19 B 249 SER MET LYS SER LYS GLU GLU LEU GLN GLN GLU ILE ALA SEQRES 20 B 249 SER ASN HET MG A 601 1 HET MG B 601 1 HET EPE B 602 15 HETNAM MG MAGNESIUM ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 3 MG 2(MG 2+) FORMUL 5 EPE C8 H18 N2 O4 S FORMUL 6 HOH *646(H2 O) HELIX 1 AA1 ASP A 317 LEU A 322 1 6 HELIX 2 AA2 SER A 323 ASN A 338 1 16 HELIX 3 AA3 SER A 344 ASN A 350 1 7 HELIX 4 AA4 SER A 361 LEU A 383 1 23 HELIX 5 AA5 SER A 391 SER A 405 1 15 HELIX 6 AA6 ASP A 413 ASN A 424 1 12 HELIX 7 AA7 LYS A 452 ASP A 469 1 18 HELIX 8 AA8 ASP A 470 GLY A 474 5 5 HELIX 9 AA9 TYR A 475 LEU A 482 1 8 HELIX 10 AB1 GLY A 510 LEU A 514 5 5 HELIX 11 AB2 SER A 530 ILE A 538 1 9 HELIX 12 AB3 THR B 294 LYS B 303 1 10 HELIX 13 AB4 ASP B 317 LEU B 322 1 6 HELIX 14 AB5 SER B 323 ASN B 338 1 16 HELIX 15 AB6 SER B 344 LYS B 351 1 8 HELIX 16 AB7 SER B 361 LEU B 383 1 23 HELIX 17 AB8 SER B 391 SER B 405 1 15 HELIX 18 AB9 ASP B 413 ASN B 424 1 12 HELIX 19 AC1 LYS B 452 ASP B 469 1 18 HELIX 20 AC2 ASP B 470 GLY B 474 5 5 HELIX 21 AC3 TYR B 475 LEU B 482 1 8 HELIX 22 AC4 GLY B 510 LEU B 514 5 5 HELIX 23 AC5 ASP B 516 TYR B 520 5 5 HELIX 24 AC6 SER B 530 ASN B 541 1 12 SHEET 1 AA1 2 MET A 354 ASP A 356 0 SHEET 2 AA1 2 LYS A 449 SER A 451 -1 O VAL A 450 N TRP A 355 SHEET 1 AA2 2 SER A 389 VAL A 390 0 SHEET 2 AA2 2 GLU A 524 VAL A 525 -1 O GLU A 524 N VAL A 390 SHEET 1 AA3 3 GLU A 436 GLY A 440 0 SHEET 2 AA3 3 LYS A 503 TYR A 509 -1 O ILE A 506 N ASN A 437 SHEET 3 AA3 3 ALA A 488 SER A 494 -1 N SER A 492 O HIS A 505 SHEET 1 AA4 2 MET B 354 ASP B 356 0 SHEET 2 AA4 2 LYS B 449 SER B 451 -1 O VAL B 450 N TRP B 355 SHEET 1 AA5 2 SER B 389 VAL B 390 0 SHEET 2 AA5 2 GLU B 524 VAL B 525 -1 O GLU B 524 N VAL B 390 SHEET 1 AA6 3 GLU B 436 GLY B 440 0 SHEET 2 AA6 3 LYS B 503 TYR B 509 -1 O ILE B 506 N ASN B 437 SHEET 3 AA6 3 ALA B 488 SER B 494 -1 N SER B 494 O LYS B 503 LINK MG MG A 601 O HOH A 946 1555 1555 2.70 LINK MG MG B 601 O HOH B 896 1555 1555 2.85 SITE 1 AC1 4 HIS A 412 LEU A 438 HIS A 477 HOH A 946 SITE 1 AC2 5 HIS B 412 LEU B 438 HIS B 477 HOH B 896 SITE 2 AC2 5 HOH B 982 SITE 1 AC3 11 TYR B 410 GLY B 440 TYR B 442 GLN B 521 SITE 2 AC3 11 ASN B 522 GLY B 523 GLU B 524 HOH B 861 SITE 3 AC3 11 HOH B 871 HOH B 954 HOH B1009 CRYST1 83.874 35.998 84.854 90.00 114.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011923 0.000000 0.005425 0.00000 SCALE2 0.000000 0.027779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012948 0.00000