HEADER OXIDOREDUCTASE 05-JUN-20 6ZAE TITLE ROOM TEMPERATURE XFEL ISOPENICILLIN N SYNTHASE STRUCTURE IN COMPLEX TITLE 2 WITH FE AND ACV UNDER ANAEROBIC CONDITIONS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS (STRAIN FGSC A4 / ATCC SOURCE 3 38163 / CBS 112.46 / NRRL 194 / M139); SOURCE 4 ORGANISM_TAXID: 227321; SOURCE 5 STRAIN: FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139; SOURCE 6 GENE: IPNA, IPS, AN2622; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: NM554; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ISOPENICILLIN N SYNTHASE, OXYGEN BINDING, XFEL, TIME-RESOLVED KEYWDS 2 CRYSTALLOGRAPHY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,J.J.A.G.KAMPS,K.SUTHERLIN,C.PHARM,M.A.MCDONOUGH,T.M.LEISSING, AUTHOR 2 P.ALLER,A.BUTRYN,J.LINYARD,P.LANG,J.BREM,F.D.FULLER,A.BATYUK, AUTHOR 3 M.S.HUNTER,I.PETTINATI,I.J.CLIFTON,R.ALONSO-MORI,S.GUL,I.YOUNG, AUTHOR 4 I.KIM,A.BHOWMICK,L.ORIORDAN,A.S.BREWSTER,T.D.W.CLARIDGE,N.K.SAUTER, AUTHOR 5 V.YACHANDRA,J.YANO,J.F.KERN,A.M.ORVILLE,C.J.SCHOFIELD REVDAT 3 24-JAN-24 6ZAE 1 REMARK REVDAT 2 01-SEP-21 6ZAE 1 JRNL REVDAT 1 09-JUN-21 6ZAE 0 JRNL AUTH P.RABE,J.J.A.G.KAMPS,K.D.SUTHERLIN,J.D.S.LINYARD,P.ALLER, JRNL AUTH 2 C.C.PHAM,H.MAKITA,I.CLIFTON,M.A.MCDONOUGH,T.M.LEISSING, JRNL AUTH 3 D.SHUTIN,P.A.LANG,A.BUTRYN,J.BREM,S.GUL,F.D.FULLER,I.S.KIM, JRNL AUTH 4 M.H.CHEAH,T.FRANSSON,A.BHOWMICK,I.D.YOUNG,L.O'RIORDAN, JRNL AUTH 5 A.S.BREWSTER,I.PETTINATI,M.DOYLE,Y.JOTI,S.OWADA,K.TONO, JRNL AUTH 6 A.BATYUK,M.S.HUNTER,R.ALONSO-MORI,U.BERGMANN,R.L.OWEN, JRNL AUTH 7 N.K.SAUTER,T.D.W.CLARIDGE,C.V.ROBINSON,V.K.YACHANDRA,J.YANO, JRNL AUTH 8 J.F.KERN,A.M.ORVILLE,C.J.SCHOFIELD JRNL TITL X-RAY FREE-ELECTRON LASER STUDIES REVEAL CORRELATED MOTION JRNL TITL 2 DURING ISOPENICILLIN N SYNTHASE CATALYSIS. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 34417180 JRNL DOI 10.1126/SCIADV.ABH0250 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.325 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 60278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.071 REMARK 3 FREE R VALUE TEST SET COUNT : 1851 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.1624 - 3.2875 1.00 5113 163 0.1410 0.1810 REMARK 3 2 3.2875 - 2.6112 1.00 4896 157 0.1564 0.1903 REMARK 3 3 2.6112 - 2.2816 1.00 4895 155 0.1533 0.1868 REMARK 3 4 2.2816 - 2.0733 1.00 4815 153 0.1504 0.1879 REMARK 3 5 2.0733 - 1.9248 1.00 4818 154 0.1660 0.2176 REMARK 3 6 1.9248 - 1.8114 1.00 4790 152 0.2035 0.2604 REMARK 3 7 1.8114 - 1.7207 1.00 4809 153 0.2391 0.2683 REMARK 3 8 1.7207 - 1.6458 1.00 4789 153 0.2706 0.3318 REMARK 3 9 1.6458 - 1.5825 1.00 4786 153 0.2968 0.3318 REMARK 3 10 1.5825 - 1.5279 0.99 4719 149 0.3290 0.3524 REMARK 3 11 1.5279 - 1.4802 0.98 4675 149 0.3549 0.3390 REMARK 3 12 1.4802 - 1.4379 0.79 3761 109 0.3821 0.4766 REMARK 3 13 1.4379 - 1.4001 0.33 1561 51 0.4282 0.4451 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.231 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2797 REMARK 3 ANGLE : 0.874 3831 REMARK 3 CHIRALITY : 0.075 403 REMARK 3 PLANARITY : 0.006 516 REMARK 3 DIHEDRAL : 13.403 1011 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.6344 78.7287 -15.5662 REMARK 3 T TENSOR REMARK 3 T11: 0.1047 T22: 0.1789 REMARK 3 T33: 0.1011 T12: 0.0091 REMARK 3 T13: -0.0217 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 2.6312 L22: 5.8895 REMARK 3 L33: 7.1869 L12: -0.6447 REMARK 3 L13: -0.8176 L23: 4.5792 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: 0.2280 S13: -0.1208 REMARK 3 S21: -0.1642 S22: -0.0942 S23: 0.0338 REMARK 3 S31: 0.0382 S32: -0.2469 S33: 0.1045 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7638 75.1129 3.3215 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.1893 REMARK 3 T33: 0.1817 T12: 0.0365 REMARK 3 T13: 0.0305 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.4623 L22: 0.7258 REMARK 3 L33: 6.4645 L12: 0.1505 REMARK 3 L13: 0.9814 L23: -1.1336 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: -0.0852 S13: -0.0943 REMARK 3 S21: 0.0898 S22: 0.2058 S23: 0.1406 REMARK 3 S31: 0.2786 S32: -0.8144 S33: -0.2851 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.7050 69.4120 24.3805 REMARK 3 T TENSOR REMARK 3 T11: 0.2678 T22: 0.2706 REMARK 3 T33: 0.0992 T12: 0.0104 REMARK 3 T13: -0.0032 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 6.6637 L22: 9.3012 REMARK 3 L33: 2.1262 L12: -0.8318 REMARK 3 L13: 2.8393 L23: -0.1262 REMARK 3 S TENSOR REMARK 3 S11: 0.0599 S12: -0.1730 S13: -0.2428 REMARK 3 S21: 0.1182 S22: 0.0360 S23: 0.0037 REMARK 3 S31: 0.3041 S32: 0.0124 S33: -0.1005 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.2600 68.6759 14.9386 REMARK 3 T TENSOR REMARK 3 T11: 0.2577 T22: 0.2216 REMARK 3 T33: 0.1533 T12: 0.0207 REMARK 3 T13: -0.0100 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 1.5654 L22: 5.8380 REMARK 3 L33: 2.8056 L12: -0.9016 REMARK 3 L13: -0.4059 L23: 1.7693 REMARK 3 S TENSOR REMARK 3 S11: -0.1018 S12: -0.1919 S13: -0.0749 REMARK 3 S21: 0.3659 S22: 0.1271 S23: -0.0728 REMARK 3 S31: 0.4485 S32: 0.2307 S33: -0.0420 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.1039 60.5561 13.2318 REMARK 3 T TENSOR REMARK 3 T11: 0.3696 T22: 0.1671 REMARK 3 T33: 0.1802 T12: 0.0134 REMARK 3 T13: -0.0174 T23: 0.0602 REMARK 3 L TENSOR REMARK 3 L11: 4.6666 L22: 2.4286 REMARK 3 L33: 2.8795 L12: -0.9085 REMARK 3 L13: 0.3391 L23: 0.3325 REMARK 3 S TENSOR REMARK 3 S11: -0.1016 S12: -0.6233 S13: -0.5149 REMARK 3 S21: 0.1536 S22: 0.0568 S23: 0.0283 REMARK 3 S31: 0.7531 S32: 0.0463 S33: 0.1132 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.8944 66.5539 -5.0757 REMARK 3 T TENSOR REMARK 3 T11: 0.2134 T22: 0.1420 REMARK 3 T33: 0.1712 T12: 0.0090 REMARK 3 T13: -0.0215 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.2595 L22: 1.8274 REMARK 3 L33: 6.0687 L12: 0.4059 REMARK 3 L13: -1.1373 L23: -1.4776 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: 0.1220 S13: -0.1349 REMARK 3 S21: -0.0356 S22: 0.0518 S23: -0.0046 REMARK 3 S31: 0.5235 S32: -0.0132 S33: 0.0300 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6805 85.0238 3.9292 REMARK 3 T TENSOR REMARK 3 T11: 0.1266 T22: 0.1426 REMARK 3 T33: 0.1451 T12: 0.0082 REMARK 3 T13: -0.0165 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.7747 L22: 1.4048 REMARK 3 L33: 2.4044 L12: 0.0861 REMARK 3 L13: -0.4051 L23: 0.1968 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: -0.0114 S13: 0.1263 REMARK 3 S21: 0.0771 S22: 0.0188 S23: 0.0387 REMARK 3 S31: -0.0847 S32: 0.0136 S33: -0.0400 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.9952 73.9016 -10.1499 REMARK 3 T TENSOR REMARK 3 T11: 0.2581 T22: 0.4585 REMARK 3 T33: 0.2309 T12: 0.0812 REMARK 3 T13: 0.0443 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 3.2147 L22: 2.2021 REMARK 3 L33: 3.6431 L12: -0.7467 REMARK 3 L13: 0.8616 L23: -1.7703 REMARK 3 S TENSOR REMARK 3 S11: 0.0780 S12: 0.1236 S13: 0.1715 REMARK 3 S21: -0.3969 S22: -0.2991 S23: -0.3517 REMARK 3 S31: 0.3406 S32: 1.2958 S33: 0.2805 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.4735 77.1095 8.6110 REMARK 3 T TENSOR REMARK 3 T11: 0.2437 T22: 0.3382 REMARK 3 T33: 0.2312 T12: 0.0253 REMARK 3 T13: -0.0208 T23: 0.0495 REMARK 3 L TENSOR REMARK 3 L11: 6.0732 L22: 4.9680 REMARK 3 L33: 6.2050 L12: -5.4097 REMARK 3 L13: -5.8341 L23: 5.5493 REMARK 3 S TENSOR REMARK 3 S11: -0.2376 S12: -0.4286 S13: 0.0315 REMARK 3 S21: 0.3027 S22: 0.3304 S23: 0.0897 REMARK 3 S31: -0.0531 S32: 0.6328 S33: -0.1643 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292105420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : MFX REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE MFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.30179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX340-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : CXI.MERGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64894 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.163 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 40.94 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.1510 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.48 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BLZ REMARK 200 REMARK 200 REMARK: NEEDLES - SIZE RANGE 40-60UM X 3 UM X 3 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M LI2SO4, 0.1 M TRIS PH 8.5, BATCH REMARK 280 MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.91300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.97200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.96900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.97200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.91300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.96900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 53 CD NE CZ NH1 NH2 REMARK 470 LYS A 59 NZ REMARK 470 MET A 63 CE REMARK 470 LYS A 80 CD CE NZ REMARK 470 LYS A 120 CD CE NZ REMARK 470 LYS A 134 CD CE NZ REMARK 470 GLN A 144 CD OE1 NE2 REMARK 470 ARG A 173 NE CZ NH1 NH2 REMARK 470 LYS A 176 NZ REMARK 470 GLU A 197 OE1 OE2 REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 208 CE NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 LYS A 266 CE NZ REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 ARG A 308 NH1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 586 O HOH A 590 2.09 REMARK 500 N VAL A 4 O HOH A 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -109.72 -100.68 REMARK 500 HIS A 82 62.13 -100.77 REMARK 500 LYS A 97 -46.80 -137.19 REMARK 500 THR A 123 -3.24 74.82 REMARK 500 ASN A 230 -26.87 -151.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 99.7 REMARK 620 3 HIS A 270 NE2 86.5 89.5 REMARK 620 4 ACV A 403 S17 93.4 92.6 177.9 REMARK 620 5 HOH A 595 O 158.3 100.7 86.3 92.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACV A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BLZ RELATED DB: PDB DBREF 6ZAE A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET SO4 A 401 5 HET FE2 A 402 1 HET ACV A 403 46 HETNAM SO4 SULFATE ION HETNAM FE2 FE (II) ION HETNAM ACV L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE FORMUL 2 SO4 O4 S 2- FORMUL 3 FE2 FE 2+ FORMUL 4 ACV C14 H25 N3 O6 S FORMUL 5 HOH *189(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 ILE A 65 1 16 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 SER A 312 GLY A 329 1 18 SHEET 1 AA1 8 LYS A 11 ASP A 13 0 SHEET 2 AA1 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA1 8 TYR A 249 CYS A 253 -1 O TYR A 249 N ALA A 44 SHEET 4 AA1 8 ILE A 220 GLN A 225 -1 N THR A 221 O ASN A 252 SHEET 5 AA1 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA1 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA1 8 GLU A 101 TYR A 105 -1 N PHE A 103 O LEU A 186 SHEET 8 AA1 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA2 5 LYS A 201 THR A 202 0 SHEET 2 AA2 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AA2 5 HIS A 270 LYS A 273 -1 O VAL A 272 N SER A 210 SHEET 4 AA2 5 LEU A 231 THR A 235 -1 N GLN A 232 O ARG A 271 SHEET 5 AA2 5 GLY A 238 ASP A 241 -1 O GLN A 240 N VAL A 233 LINK NE2 HIS A 214 FE FE2 A 402 1555 1555 2.17 LINK OD1 ASP A 216 FE FE2 A 402 1555 1555 1.98 LINK NE2 HIS A 270 FE FE2 A 402 1555 1555 2.21 LINK FE FE2 A 402 S17 ACV A 403 1555 1555 2.36 LINK FE FE2 A 402 O HOH A 595 1555 1555 2.10 CISPEP 1 ASP A 193 PRO A 194 0 2.88 SITE 1 AC1 2 ARG A 27 HOH A 622 SITE 1 AC2 5 HIS A 214 ASP A 216 HIS A 270 ACV A 403 SITE 2 AC2 5 HOH A 595 SITE 1 AC3 17 ARG A 87 TYR A 91 SER A 183 ILE A 187 SITE 2 AC3 17 TYR A 189 PHE A 211 HIS A 214 ASP A 216 SITE 3 AC3 17 SER A 281 PHE A 285 FE2 A 402 HOH A 537 SITE 4 AC3 17 HOH A 541 HOH A 545 HOH A 578 HOH A 581 SITE 5 AC3 17 HOH A 635 CRYST1 41.826 75.938 101.944 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023909 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009809 0.00000