HEADER OXIDOREDUCTASE 05-JUN-20 6ZAF TITLE ROOM TEMPERATURE XFEL ISOPENICILLIN N SYNTHASE STRUCTURE IN COMPLEX TITLE 2 WITH FE AND ACV AFTER EXPOSURE TO DIOXYGEN FOR 400MS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS (STRAIN FGSC A4 / ATCC SOURCE 3 38163 / CBS 112.46 / NRRL 194 / M139); SOURCE 4 ORGANISM_TAXID: 227321; SOURCE 5 STRAIN: FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139; SOURCE 6 GENE: IPNA, IPS, AN2622; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: NM554; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ISOPENICILLIN N SYNTHASE, OXYGEN BINDING, XFEL, TIME-RESOLVED KEYWDS 2 CRYSTALLOGRAPHY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,J.J.A.G.KAMPS,K.SUTHERLIN,C.PHARM,M.A.MCDONOUGH,T.M.LEISSING, AUTHOR 2 P.ALLER,A.BUTRYN,J.LINYARD,P.LANG,J.BREM,F.D.FULLER,A.BATYUK, AUTHOR 3 M.S.HUNTER,I.PETTINATI,I.J.CLIFTON,R.ALONSO-MORI,S.GUL,I.YOUNG, AUTHOR 4 I.KIM,A.BHOWMICK,L.ORIORDAN,A.S.BREWSTER,T.D.W.CLARIDGE,N.K.SAUTER, AUTHOR 5 V.YACHANDRA,J.YANO,J.F.KERN,A.M.ORVILLE,C.J.SCHOFIELD REVDAT 3 24-JAN-24 6ZAF 1 REMARK REVDAT 2 01-SEP-21 6ZAF 1 JRNL REVDAT 1 09-JUN-21 6ZAF 0 JRNL AUTH P.RABE,J.J.A.G.KAMPS,K.D.SUTHERLIN,J.D.S.LINYARD,P.ALLER, JRNL AUTH 2 C.C.PHAM,H.MAKITA,I.CLIFTON,M.A.MCDONOUGH,T.M.LEISSING, JRNL AUTH 3 D.SHUTIN,P.A.LANG,A.BUTRYN,J.BREM,S.GUL,F.D.FULLER,I.S.KIM, JRNL AUTH 4 M.H.CHEAH,T.FRANSSON,A.BHOWMICK,I.D.YOUNG,L.O'RIORDAN, JRNL AUTH 5 A.S.BREWSTER,I.PETTINATI,M.DOYLE,Y.JOTI,S.OWADA,K.TONO, JRNL AUTH 6 A.BATYUK,M.S.HUNTER,R.ALONSO-MORI,U.BERGMANN,R.L.OWEN, JRNL AUTH 7 N.K.SAUTER,T.D.W.CLARIDGE,C.V.ROBINSON,V.K.YACHANDRA,J.YANO, JRNL AUTH 8 J.F.KERN,A.M.ORVILLE,C.J.SCHOFIELD JRNL TITL X-RAY FREE-ELECTRON LASER STUDIES REVEAL CORRELATED MOTION JRNL TITL 2 DURING ISOPENICILLIN N SYNTHASE CATALYSIS. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 34417180 JRNL DOI 10.1126/SCIADV.ABH0250 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.325 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 62475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.091 REMARK 3 FREE R VALUE TEST SET COUNT : 1931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.2839 - 3.3694 1.00 4765 152 0.1342 0.1629 REMARK 3 2 3.3694 - 2.6764 1.00 4573 146 0.1469 0.1758 REMARK 3 3 2.6764 - 2.3386 1.00 4499 143 0.1494 0.1770 REMARK 3 4 2.3386 - 2.1251 1.00 4505 143 0.1426 0.1800 REMARK 3 5 2.1251 - 1.9729 1.00 4488 144 0.1517 0.2045 REMARK 3 6 1.9729 - 1.8566 1.00 4449 142 0.1746 0.2514 REMARK 3 7 1.8566 - 1.7637 1.00 4455 141 0.1998 0.2626 REMARK 3 8 1.7637 - 1.6870 1.00 4431 142 0.2231 0.2510 REMARK 3 9 1.6870 - 1.6221 1.00 4465 142 0.2530 0.2737 REMARK 3 10 1.6221 - 1.5661 1.00 4449 142 0.2772 0.2977 REMARK 3 11 1.5661 - 1.5172 1.00 4420 140 0.3117 0.3665 REMARK 3 12 1.5172 - 1.4738 0.99 4402 139 0.3427 0.3777 REMARK 3 13 1.4738 - 1.4350 0.88 3879 124 0.3891 0.3704 REMARK 3 14 1.4350 - 1.4001 0.63 2764 91 0.4076 0.4282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.225 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2790 REMARK 3 ANGLE : 0.869 3821 REMARK 3 CHIRALITY : 0.076 401 REMARK 3 PLANARITY : 0.006 511 REMARK 3 DIHEDRAL : 13.606 1008 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1094 -3.2211 15.2328 REMARK 3 T TENSOR REMARK 3 T11: 0.1261 T22: 0.1833 REMARK 3 T33: 0.1215 T12: -0.0287 REMARK 3 T13: 0.0318 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 2.8058 L22: 6.9738 REMARK 3 L33: 6.3923 L12: 0.0027 REMARK 3 L13: 0.6672 L23: 4.1051 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: -0.1703 S13: 0.0906 REMARK 3 S21: 0.1159 S22: -0.0507 S23: 0.0465 REMARK 3 S31: 0.0685 S32: -0.1527 S33: 0.1016 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5616 0.4472 -1.9640 REMARK 3 T TENSOR REMARK 3 T11: 0.1220 T22: 0.1655 REMARK 3 T33: 0.1641 T12: -0.0354 REMARK 3 T13: -0.0210 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.3563 L22: 1.5153 REMARK 3 L33: 5.1593 L12: -0.2589 REMARK 3 L13: -0.9311 L23: -1.0048 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: 0.0905 S13: 0.1120 REMARK 3 S21: -0.0821 S22: 0.1255 S23: 0.1725 REMARK 3 S31: -0.2370 S32: -0.5781 S33: -0.1638 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3317 6.4894 -24.4906 REMARK 3 T TENSOR REMARK 3 T11: 0.2752 T22: 0.2130 REMARK 3 T33: 0.1303 T12: -0.0187 REMARK 3 T13: -0.0027 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 6.4313 L22: 5.6701 REMARK 3 L33: 5.2512 L12: 0.3474 REMARK 3 L13: -1.2198 L23: 2.6555 REMARK 3 S TENSOR REMARK 3 S11: 0.0664 S12: 0.1377 S13: 0.2165 REMARK 3 S21: -0.2236 S22: 0.0391 S23: 0.0874 REMARK 3 S31: -0.3222 S32: -0.1305 S33: -0.0767 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8151 6.3403 -15.1038 REMARK 3 T TENSOR REMARK 3 T11: 0.2169 T22: 0.1952 REMARK 3 T33: 0.1502 T12: -0.0187 REMARK 3 T13: 0.0065 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 1.5849 L22: 5.7196 REMARK 3 L33: 2.7011 L12: 1.5275 REMARK 3 L13: 0.8185 L23: 1.7663 REMARK 3 S TENSOR REMARK 3 S11: -0.1420 S12: 0.1843 S13: 0.0516 REMARK 3 S21: -0.3010 S22: 0.1605 S23: -0.1023 REMARK 3 S31: -0.3300 S32: 0.2600 S33: -0.0389 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6873 15.3517 -13.2595 REMARK 3 T TENSOR REMARK 3 T11: 0.3848 T22: 0.1830 REMARK 3 T33: 0.2176 T12: -0.0132 REMARK 3 T13: 0.0051 T23: 0.0794 REMARK 3 L TENSOR REMARK 3 L11: 5.1244 L22: 2.2795 REMARK 3 L33: 2.2846 L12: 1.4567 REMARK 3 L13: -0.6058 L23: 0.5915 REMARK 3 S TENSOR REMARK 3 S11: -0.0678 S12: 0.6879 S13: 0.7520 REMARK 3 S21: -0.1346 S22: -0.0122 S23: 0.0747 REMARK 3 S31: -0.7504 S32: 0.1322 S33: 0.1245 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1433 9.5800 4.9216 REMARK 3 T TENSOR REMARK 3 T11: 0.2219 T22: 0.1216 REMARK 3 T33: 0.1598 T12: -0.0130 REMARK 3 T13: 0.0220 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 0.8397 L22: 1.8921 REMARK 3 L33: 6.3046 L12: -0.5946 REMARK 3 L13: 0.9105 L23: -1.9172 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: -0.0869 S13: 0.1142 REMARK 3 S21: 0.0186 S22: 0.0225 S23: -0.0264 REMARK 3 S31: -0.6045 S32: 0.0565 S33: 0.0527 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3899 -9.3399 -3.1206 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.1514 REMARK 3 T33: 0.1659 T12: -0.0119 REMARK 3 T13: 0.0142 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.5743 L22: 1.2512 REMARK 3 L33: 2.2989 L12: -0.1438 REMARK 3 L13: 0.6417 L23: 0.2701 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: 0.0101 S13: -0.1271 REMARK 3 S21: -0.0778 S22: 0.0187 S23: 0.0571 REMARK 3 S31: 0.0861 S32: 0.0118 S33: -0.0505 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6653 -1.6648 -3.9618 REMARK 3 T TENSOR REMARK 3 T11: 0.1009 T22: 0.1308 REMARK 3 T33: 0.0995 T12: -0.0146 REMARK 3 T13: 0.0125 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 1.1558 L22: 1.9935 REMARK 3 L33: 2.3017 L12: 0.3439 REMARK 3 L13: 0.0748 L23: 0.0998 REMARK 3 S TENSOR REMARK 3 S11: -0.0115 S12: 0.0229 S13: 0.0491 REMARK 3 S21: 0.0172 S22: -0.0116 S23: -0.0421 REMARK 3 S31: -0.1454 S32: 0.1293 S33: 0.0104 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3923 -1.2213 13.4162 REMARK 3 T TENSOR REMARK 3 T11: 0.2565 T22: 0.5958 REMARK 3 T33: 0.2945 T12: -0.0406 REMARK 3 T13: -0.0774 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 5.8463 L22: 5.5616 REMARK 3 L33: 5.7155 L12: 2.8810 REMARK 3 L13: -5.7303 L23: -2.2758 REMARK 3 S TENSOR REMARK 3 S11: 0.1459 S12: -0.5146 S13: -0.2681 REMARK 3 S21: 0.4260 S22: -0.2629 S23: -0.0601 REMARK 3 S31: 0.3484 S32: 1.9884 S33: 0.1724 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7171 -1.1749 -8.6085 REMARK 3 T TENSOR REMARK 3 T11: 0.2576 T22: 0.3422 REMARK 3 T33: 0.2336 T12: -0.0223 REMARK 3 T13: 0.0193 T23: 0.0492 REMARK 3 L TENSOR REMARK 3 L11: 4.2854 L22: 8.3540 REMARK 3 L33: 6.8889 L12: 4.6472 REMARK 3 L13: 4.3430 L23: 7.1558 REMARK 3 S TENSOR REMARK 3 S11: -0.1571 S12: 0.2918 S13: -0.1172 REMARK 3 S21: -0.4575 S22: 0.1963 S23: -0.1770 REMARK 3 S31: -0.0768 S32: 0.4899 S33: -0.0238 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292105727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : MFX REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE MFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.30167 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX340-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : CXI.MERGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64896 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 65.87 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.243 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BLZ REMARK 200 REMARK 200 REMARK: NEEDLES - SIZE RANGE 40-60UM X 3 UM X 3 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M LI2SO4, 0.1M TRIS PH8.5, BATCH REMARK 280 MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.94700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.94250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.93550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.94250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.94700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.93550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 3 OG REMARK 470 GLN A 52 NE2 REMARK 470 ARG A 53 NE CZ NH1 NH2 REMARK 470 GLN A 56 OE1 NE2 REMARK 470 LYS A 57 CE NZ REMARK 470 LYS A 59 CE NZ REMARK 470 ARG A 76 CZ NH1 NH2 REMARK 470 LYS A 80 CD CE NZ REMARK 470 ASP A 84 CG OD1 OD2 REMARK 470 ASP A 113 OD1 OD2 REMARK 470 LYS A 120 CD CE NZ REMARK 470 LYS A 134 CD CE NZ REMARK 470 LYS A 176 NZ REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 208 CE NZ REMARK 470 LYS A 266 CD CE NZ REMARK 470 ASN A 303 ND2 REMARK 470 LYS A 305 CD CE NZ REMARK 470 ASP A 307 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 167 NH1 ARG A 173 1.96 REMARK 500 OD1 ASP A 131 OG1 THR A 133 2.04 REMARK 500 O HOH A 654 O HOH A 673 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -107.50 -101.97 REMARK 500 LYS A 97 -44.86 -135.72 REMARK 500 THR A 123 -8.03 75.41 REMARK 500 ASN A 230 -27.79 -152.67 REMARK 500 LEU A 288 -158.25 -89.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 403 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 101.7 REMARK 620 3 HIS A 270 NE2 86.4 90.3 REMARK 620 4 ACV A 402 S17 94.5 90.7 178.5 REMARK 620 5 HOH A 623 O 157.4 100.1 87.6 91.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACV A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BLZ RELATED DB: PDB DBREF 6ZAF A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET SO4 A 401 5 HET ACV A 402 46 HET FE2 A 403 1 HETNAM SO4 SULFATE ION HETNAM ACV L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE HETNAM FE2 FE (II) ION FORMUL 2 SO4 O4 S 2- FORMUL 3 ACV C14 H25 N3 O6 S FORMUL 4 FE2 FE 2+ FORMUL 5 HOH *178(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 ILE A 65 1 16 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 SER A 312 GLY A 329 1 18 SHEET 1 AA1 8 LYS A 11 ASP A 13 0 SHEET 2 AA1 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA1 8 TYR A 249 CYS A 253 -1 O TYR A 249 N ALA A 44 SHEET 4 AA1 8 ILE A 220 GLN A 225 -1 N LEU A 223 O LEU A 250 SHEET 5 AA1 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA1 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA1 8 GLU A 101 TYR A 105 -1 N PHE A 103 O LEU A 186 SHEET 8 AA1 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA2 5 LYS A 201 THR A 202 0 SHEET 2 AA2 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AA2 5 HIS A 270 LYS A 273 -1 O VAL A 272 N SER A 210 SHEET 4 AA2 5 LEU A 231 THR A 235 -1 N GLN A 232 O ARG A 271 SHEET 5 AA2 5 GLY A 238 ASP A 241 -1 O GLN A 240 N VAL A 233 LINK NE2 HIS A 214 FE FE2 A 403 1555 1555 2.19 LINK OD1 ASP A 216 FE FE2 A 403 1555 1555 2.03 LINK NE2 HIS A 270 FE FE2 A 403 1555 1555 2.20 LINK S17 ACV A 402 FE FE2 A 403 1555 1555 2.34 LINK FE FE2 A 403 O HOH A 623 1555 1555 2.11 CISPEP 1 ASP A 193 PRO A 194 0 2.38 SITE 1 AC1 2 ARG A 37 ARG A 300 SITE 1 AC2 18 ARG A 87 TYR A 91 SER A 183 ILE A 187 SITE 2 AC2 18 TYR A 189 PHE A 211 HIS A 214 ASP A 216 SITE 3 AC2 18 SER A 281 PHE A 285 FE2 A 403 HOH A 519 SITE 4 AC2 18 HOH A 525 HOH A 568 HOH A 606 HOH A 619 SITE 5 AC2 18 HOH A 623 HOH A 626 SITE 1 AC3 5 HIS A 214 ASP A 216 HIS A 270 ACV A 402 SITE 2 AC3 5 HOH A 623 CRYST1 41.894 75.871 101.885 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023870 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009815 0.00000