HEADER PEPTIDE BINDING PROTEIN 09-JUN-20 6ZBQ TITLE SMALL-MOLECULE INHIBITORS OF THE PDZ DOMAIN OF DISHEVELLED PROTEINS TITLE 2 INTERRUPT WNT SIGNALLING COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISHEVELLED, DSH HOMOLOG 3 (DROSOPHILA), ISOFORM CRA_B; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DKFZP586M1622, DVL3, HCG_40299; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET32 KEYWDS PDZ, DVL, INHIBITORS, WNT, SIGNALLING, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.ROSKE,U.HEINEMANN,H.OSCHKINAT REVDAT 3 24-JAN-24 6ZBQ 1 REMARK REVDAT 2 20-JUL-22 6ZBQ 1 JRNL REVDAT 1 23-JUN-21 6ZBQ 0 JRNL AUTH Y.ROSKE,U.HEINEMANN,H.OSCHKINAT,N.KAMDEM,D.KOVALSKYY, JRNL AUTH 2 M.O.PLATONOV,O.M.BALINSKYI,A.KREUCHWIG,J.SAUPE,L.FANG, JRNL AUTH 3 A.DIEHL,P.SCHMIEDER,G.KRAUSE,J.RADEMANN,W.BIRCHMEIER JRNL TITL SMALL-MOLECULE INHIBITORS OF THE PDZ DOMAIN OF DISHEVELLED JRNL TITL 2 PROTEINS INTERRUPT WNT SIGNALLING JRNL REF J.MAGN.RESON. 2021 JRNL REFN ISSN 0022-2364 JRNL DOI 10.5194/MR-2-355-2021 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1918 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2677 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1312 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.26000 REMARK 3 B22 (A**2) : -1.26000 REMARK 3 B33 (A**2) : 2.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.052 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.628 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1424 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1396 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1939 ; 1.370 ; 1.678 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3209 ; 1.306 ; 1.594 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 185 ; 7.283 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 60 ;41.025 ;24.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 258 ;14.077 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;17.952 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 196 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1585 ; 0.019 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 245 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2820 ; 6.995 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 242 A 336 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 245 B 336 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6ZBQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292108949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38358 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 30.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2F0A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 8000, 0.2 M AMMONIUM SULPHATE, REMARK 280 0.1 M MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.16700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.16700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.21700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.16700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.16700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.21700 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 38.16700 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 38.16700 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 36.21700 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 38.16700 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 38.16700 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 36.21700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 575 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 584 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 268 REMARK 465 ASN A 269 REMARK 465 GLU A 270 REMARK 465 ARG A 271 REMARK 465 GLY A 272 REMARK 465 ASP A 273 REMARK 465 ALA B 242 REMARK 465 MET B 243 REMARK 465 SER B 244 REMARK 465 SER B 268 REMARK 465 ASN B 269 REMARK 465 GLU B 270 REMARK 465 ARG B 271 REMARK 465 GLY B 272 REMARK 465 ASP B 273 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 242 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 552 O HOH B 584 1.78 REMARK 500 OAB QE2 B 401 O HOH B 501 1.83 REMARK 500 O HOH A 501 O HOH A 504 1.97 REMARK 500 O HOH B 603 O HOH B 609 1.99 REMARK 500 O HOH A 556 O HOH A 594 2.02 REMARK 500 OD2 ASP A 313 NH1 ARG A 317 2.05 REMARK 500 NH2 ARG A 292 O HOH A 501 2.11 REMARK 500 NH2 ARG B 317 O HOH B 502 2.12 REMARK 500 O HOH B 504 O HOH B 597 2.12 REMARK 500 O GLY A 274 O HOH A 502 2.15 REMARK 500 O LEU B 245 O HOH B 503 2.15 REMARK 500 SAX QE2 B 401 O HOH B 501 2.15 REMARK 500 OD1 ASP A 313 O HOH A 503 2.16 REMARK 500 CAK QE2 B 401 O HOH B 501 2.18 REMARK 500 CA LEU B 245 O HOH B 561 2.18 REMARK 500 NH1 ARG A 292 O HOH A 504 2.18 REMARK 500 CB ASN B 246 O HOH B 538 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 601 O HOH A 615 4555 1.88 REMARK 500 O HOH A 501 O HOH B 603 2455 2.00 REMARK 500 O HOH A 504 O HOH B 609 2455 2.03 REMARK 500 O HOH A 504 O HOH B 603 2455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 303 -128.54 50.77 REMARK 500 MET B 254 17.47 57.64 REMARK 500 ASN B 303 -125.27 49.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 274 -10.55 REMARK 500 ASN A 309 11.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 627 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 628 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 629 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A 630 DISTANCE = 10.26 ANGSTROMS REMARK 525 HOH B 617 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH B 618 DISTANCE = 7.65 ANGSTROMS REMARK 525 HOH B 619 DISTANCE = 7.76 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QE2 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QE2 B 401 DBREF 6ZBQ A 243 335 UNP Q9UG07 Q9UG07_HUMAN 75 167 DBREF 6ZBQ B 243 335 UNP Q9UG07 Q9UG07_HUMAN 75 167 SEQADV 6ZBQ ALA A 242 UNP Q9UG07 EXPRESSION TAG SEQADV 6ZBQ SER A 336 UNP Q9UG07 EXPRESSION TAG SEQADV 6ZBQ ALA B 242 UNP Q9UG07 EXPRESSION TAG SEQADV 6ZBQ SER B 336 UNP Q9UG07 EXPRESSION TAG SEQRES 1 A 95 ALA MET SER LEU ASN ILE ILE THR VAL THR LEU ASN MET SEQRES 2 A 95 GLU LYS TYR ASN PHE LEU GLY ILE SER ILE VAL GLY GLN SEQRES 3 A 95 SER ASN GLU ARG GLY ASP GLY GLY ILE TYR ILE GLY SER SEQRES 4 A 95 ILE MET LYS GLY GLY ALA VAL ALA ALA ASP GLY ARG ILE SEQRES 5 A 95 GLU PRO GLY ASP MET LEU LEU GLN VAL ASN GLU ILE ASN SEQRES 6 A 95 PHE GLU ASN MET SER ASN ASP ASP ALA VAL ARG VAL LEU SEQRES 7 A 95 ARG GLU ILE VAL HIS LYS PRO GLY PRO ILE THR LEU THR SEQRES 8 A 95 VAL ALA LYS SER SEQRES 1 B 95 ALA MET SER LEU ASN ILE ILE THR VAL THR LEU ASN MET SEQRES 2 B 95 GLU LYS TYR ASN PHE LEU GLY ILE SER ILE VAL GLY GLN SEQRES 3 B 95 SER ASN GLU ARG GLY ASP GLY GLY ILE TYR ILE GLY SER SEQRES 4 B 95 ILE MET LYS GLY GLY ALA VAL ALA ALA ASP GLY ARG ILE SEQRES 5 B 95 GLU PRO GLY ASP MET LEU LEU GLN VAL ASN GLU ILE ASN SEQRES 6 B 95 PHE GLU ASN MET SER ASN ASP ASP ALA VAL ARG VAL LEU SEQRES 7 B 95 ARG GLU ILE VAL HIS LYS PRO GLY PRO ILE THR LEU THR SEQRES 8 B 95 VAL ALA LYS SER HET QE2 A 401 24 HET QE2 B 401 24 HETNAM QE2 5-FLUORANYL-2-(5,6,7,8-TETRAHYDRONAPHTHALEN-2- HETNAM 2 QE2 YLSULFONYLAMINO)BENZOIC ACID FORMUL 3 QE2 2(C17 H16 F N O4 S) FORMUL 5 HOH *249(H2 O) HELIX 1 AA1 GLY A 285 GLY A 291 1 7 HELIX 2 AA2 SER A 311 LYS A 325 1 15 HELIX 3 AA3 GLY B 285 GLY B 291 1 7 HELIX 4 AA4 SER B 311 HIS B 324 1 14 SHEET 1 AA1 5 ILE A 247 LEU A 252 0 SHEET 2 AA1 5 ILE A 329 ALA A 334 -1 O ILE A 329 N LEU A 252 SHEET 3 AA1 5 MET A 298 VAL A 302 -1 N GLN A 301 O THR A 332 SHEET 4 AA1 5 ILE A 276 ILE A 281 -1 N ILE A 276 O LEU A 299 SHEET 5 AA1 5 ILE A 262 GLY A 266 -1 N VAL A 265 O TYR A 277 SHEET 1 AA2 4 ILE A 247 LEU A 252 0 SHEET 2 AA2 4 ILE A 329 ALA A 334 -1 O ILE A 329 N LEU A 252 SHEET 3 AA2 4 MET A 298 VAL A 302 -1 N GLN A 301 O THR A 332 SHEET 4 AA2 4 ILE A 305 ASN A 306 -1 O ILE A 305 N VAL A 302 SHEET 1 AA3 5 ILE B 247 LEU B 252 0 SHEET 2 AA3 5 ILE B 329 ALA B 334 -1 O ILE B 329 N LEU B 252 SHEET 3 AA3 5 MET B 298 VAL B 302 -1 N LEU B 300 O THR B 332 SHEET 4 AA3 5 ILE B 276 ILE B 281 -1 N ILE B 276 O LEU B 299 SHEET 5 AA3 5 ILE B 262 VAL B 265 -1 N VAL B 265 O TYR B 277 SHEET 1 AA4 4 ILE B 247 LEU B 252 0 SHEET 2 AA4 4 ILE B 329 ALA B 334 -1 O ILE B 329 N LEU B 252 SHEET 3 AA4 4 MET B 298 VAL B 302 -1 N LEU B 300 O THR B 332 SHEET 4 AA4 4 ILE B 305 ASN B 306 -1 O ILE B 305 N VAL B 302 SITE 1 AC1 11 PHE A 259 LEU A 260 GLY A 261 ILE A 262 SITE 2 AC1 11 MET A 310 VAL A 316 VAL A 318 LEU A 319 SITE 3 AC1 11 ARG A 320 GLU A 321 VAL A 323 SITE 1 AC2 15 GLY A 274 TYR A 277 PHE B 259 LEU B 260 SITE 2 AC2 15 GLY B 261 ILE B 262 VAL B 316 LEU B 319 SITE 3 AC2 15 ARG B 320 VAL B 323 HIS B 324 HOH B 501 SITE 4 AC2 15 HOH B 539 HOH B 552 HOH B 560 CRYST1 76.334 76.334 72.434 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013100 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013806 0.00000