HEADER IMMUNE SYSTEM 15-JUN-20 6ZDX TITLE RIFIN VARIABLE REGION BOUND TO LILRB1 ECTODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIFIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LEUKOCYTE IMMUNOGLOBULIN-LIKE RECEPTOR SUBFAMILY B MEMBER COMPND 7 1; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PF3D7_1254800; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: LILRB1; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS RIFIN, LILRB1, INHIBITORY IMMUNE RECEPTOR, MALARIA, INFECTED- KEYWDS 2 ERYTHROCYTE, PLASMODIUM FALCIPARUM, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.E.HARRISON,M.K.HIGGINS REVDAT 4 24-JAN-24 6ZDX 1 REMARK REVDAT 3 25-NOV-20 6ZDX 1 JRNL HETSYN REVDAT 2 29-JUL-20 6ZDX 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 22-JUL-20 6ZDX 0 JRNL AUTH T.E.HARRISON,A.M.MORCH,J.H.FELCE,A.SAKOGUCHI,A.J.REID, JRNL AUTH 2 H.ARASE,M.L.DUSTIN,M.K.HIGGINS JRNL TITL STRUCTURAL BASIS FOR RIFIN-MEDIATED ACTIVATION OF LILRB1 IN JRNL TITL 2 MALARIA. JRNL REF NATURE V. 587 309 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 32650338 JRNL DOI 10.1038/S41586-020-2530-3 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 89.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30517 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1497 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 611 REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 574 REMARK 3 BIN R VALUE (WORKING SET) : 0.2675 REMARK 3 BIN FREE R VALUE : 0.2418 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.06 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 37 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3849 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 120.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.30800 REMARK 3 B22 (A**2) : -11.30800 REMARK 3 B33 (A**2) : 22.61600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.470 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.358 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.264 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.359 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.267 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.898 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4016 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5480 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1357 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 672 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3956 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 524 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4415 ; 0.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.25 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.09 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.40 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -10.8600 -51.5697 -8.6181 REMARK 3 T TENSOR REMARK 3 T11: 0.0338 T22: 0.0590 REMARK 3 T33: -0.0344 T12: -0.1984 REMARK 3 T13: -0.0204 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.3874 L22: 0.3040 REMARK 3 L33: 0.0000 L12: 0.2405 REMARK 3 L13: 0.4336 L23: -0.3291 REMARK 3 S TENSOR REMARK 3 S11: 0.0633 S12: -0.0473 S13: 0.0054 REMARK 3 S21: -0.0059 S22: -0.0539 S23: 0.1419 REMARK 3 S31: -0.0199 S32: 0.0902 S33: -0.0094 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 27.3930 -33.2619 -8.9475 REMARK 3 T TENSOR REMARK 3 T11: 0.0938 T22: -0.0380 REMARK 3 T33: 0.0031 T12: -0.0782 REMARK 3 T13: -0.1556 T23: 0.0762 REMARK 3 L TENSOR REMARK 3 L11: 0.0937 L22: 0.0217 REMARK 3 L33: 0.0751 L12: 0.0459 REMARK 3 L13: 0.0934 L23: -0.1044 REMARK 3 S TENSOR REMARK 3 S11: -0.1370 S12: 0.0370 S13: 0.0734 REMARK 3 S21: 0.0296 S22: 0.0035 S23: 0.0696 REMARK 3 S31: 0.0664 S32: 0.0805 S33: 0.1335 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30613 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 277.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6EWA, 4LL9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUM ACETATE, 100 MM HEPES REMARK 280 PH 7.5, 25 % V/V ISOPROPANOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.48933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 184.97867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 138.73400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 231.22333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.24467 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.48933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 184.97867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 231.22333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 138.73400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.24467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 145 REMARK 465 SER A 146 REMARK 465 SER A 147 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 SER A 154 REMARK 465 SER A 155 REMARK 465 GLY A 156 REMARK 465 LEU A 157 REMARK 465 VAL A 158 REMARK 465 PRO A 159 REMARK 465 ARG A 160 REMARK 465 GLY A 161 REMARK 465 SER A 162 REMARK 465 ALA A 263 REMARK 465 THR A 264 REMARK 465 ALA A 265 REMARK 465 THR A 266 REMARK 465 THR A 267 REMARK 465 PRO A 268 REMARK 465 THR A 269 REMARK 465 THR A 270 REMARK 465 PHE A 271 REMARK 465 PHE A 272 REMARK 465 THR A 273 REMARK 465 MET B -30 REMARK 465 GLY B -29 REMARK 465 ILE B -28 REMARK 465 LEU B -27 REMARK 465 PRO B -26 REMARK 465 SER B -25 REMARK 465 PRO B -24 REMARK 465 GLY B -23 REMARK 465 MET B -22 REMARK 465 PRO B -21 REMARK 465 ALA B -20 REMARK 465 LEU B -19 REMARK 465 LEU B -18 REMARK 465 SER B -17 REMARK 465 LEU B -16 REMARK 465 VAL B -15 REMARK 465 SER B -14 REMARK 465 LEU B -13 REMARK 465 LEU B -12 REMARK 465 SER B -11 REMARK 465 VAL B -10 REMARK 465 LEU B -9 REMARK 465 LEU B -8 REMARK 465 MET B -7 REMARK 465 GLY B -6 REMARK 465 CYS B -5 REMARK 465 VAL B -4 REMARK 465 ALA B -3 REMARK 465 GLU B -2 REMARK 465 THR B -1 REMARK 465 GLY B 0 REMARK 465 GLY B 1 REMARK 465 GLY B 398 REMARK 465 THR B 399 REMARK 465 LYS B 400 REMARK 465 HIS B 401 REMARK 465 HIS B 402 REMARK 465 HIS B 403 REMARK 465 HIS B 404 REMARK 465 HIS B 405 REMARK 465 HIS B 406 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 32 -156.39 -155.94 REMARK 500 LYS B 41 -55.51 71.17 REMARK 500 ASP B 80 -72.51 -77.14 REMARK 500 ARG B 84 163.21 178.17 REMARK 500 ALA B 151 73.85 -106.80 REMARK 500 SER B 154 16.31 57.13 REMARK 500 SER B 181 71.08 -156.26 REMARK 500 SER B 186 -178.33 -67.14 REMARK 500 SER B 200 142.49 -36.03 REMARK 500 GLU B 216 -5.08 80.08 REMARK 500 GLN B 251 -95.93 -90.82 REMARK 500 ALA B 252 51.03 -94.26 REMARK 500 GLN B 308 -70.63 -84.95 REMARK 500 THR B 365 -168.63 -119.87 REMARK 500 HIS B 368 45.34 -74.20 REMARK 500 REMARK 500 REMARK: NULL DBREF 6ZDX A 165 273 UNP Q8I4N9 Q8I4N9_PLAF7 165 273 DBREF1 6ZDX B 2 397 UNP A0A0G2JQ46_HUMAN DBREF2 6ZDX B A0A0G2JQ46 25 420 SEQADV 6ZDX GLY A 145 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX SER A 146 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX SER A 147 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX HIS A 148 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX HIS A 149 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX HIS A 150 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX HIS A 151 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX HIS A 152 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX HIS A 153 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX SER A 154 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX SER A 155 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX GLY A 156 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX LEU A 157 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX VAL A 158 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX PRO A 159 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX ARG A 160 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX GLY A 161 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX SER A 162 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX HIS A 163 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX MET A 164 UNP Q8I4N9 EXPRESSION TAG SEQADV 6ZDX MET B -30 UNP A0A0G2JQ4 INITIATING METHIONINE SEQADV 6ZDX GLY B -29 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX ILE B -28 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX LEU B -27 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX PRO B -26 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX SER B -25 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX PRO B -24 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX GLY B -23 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX MET B -22 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX PRO B -21 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX ALA B -20 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX LEU B -19 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX LEU B -18 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX SER B -17 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX LEU B -16 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX VAL B -15 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX SER B -14 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX LEU B -13 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX LEU B -12 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX SER B -11 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX VAL B -10 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX LEU B -9 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX LEU B -8 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX MET B -7 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX GLY B -6 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX CYS B -5 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX VAL B -4 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX ALA B -3 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX GLU B -2 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX THR B -1 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX GLY B 0 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX GLY B 1 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX GLY B 398 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX THR B 399 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX LYS B 400 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX HIS B 401 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX HIS B 402 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX HIS B 403 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX HIS B 404 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX HIS B 405 UNP A0A0G2JQ4 EXPRESSION TAG SEQADV 6ZDX HIS B 406 UNP A0A0G2JQ4 EXPRESSION TAG SEQRES 1 A 129 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 129 VAL PRO ARG GLY SER HIS MET ASN TYR GLU THR ILE ASN SEQRES 3 A 129 ALA PHE ILE ALA LYS THR ILE GLU GLU LEU GLU GLY ILE SEQRES 4 A 129 PRO GLY ILE THR LYS LEU PHE GLY ALA LYS ILE SER GLN SEQRES 5 A 129 PHE VAL THR PRO ALA VAL PHE ARG LYS PRO MET SER LEU SEQRES 6 A 129 VAL GLU THR ILE LEU SER GLU LYS LYS LYS LEU CYS LEU SEQRES 7 A 129 CYS ALA ALA ASN LYS ASN GLU LEU LEU CYS ARG GLY MET SEQRES 8 A 129 ASN PRO ASN VAL PRO GLU THR LEU PRO LYS LYS ILE GLU SEQRES 9 A 129 VAL ALA VAL ASN GLU VAL LEU SER SER VAL ASN ASP THR SEQRES 10 A 129 TRP ALA THR ALA THR THR PRO THR THR PHE PHE THR SEQRES 1 B 437 MET GLY ILE LEU PRO SER PRO GLY MET PRO ALA LEU LEU SEQRES 2 B 437 SER LEU VAL SER LEU LEU SER VAL LEU LEU MET GLY CYS SEQRES 3 B 437 VAL ALA GLU THR GLY GLY HIS LEU PRO LYS PRO THR LEU SEQRES 4 B 437 TRP ALA GLU PRO GLY SER VAL ILE THR GLN GLY SER PRO SEQRES 5 B 437 VAL THR LEU ARG CYS GLN GLY GLY GLN GLU THR GLN GLU SEQRES 6 B 437 TYR ARG LEU TYR ARG GLU LYS LYS THR ALA LEU TRP ILE SEQRES 7 B 437 THR ARG ILE PRO GLN GLU LEU VAL LYS LYS GLY GLN PHE SEQRES 8 B 437 PRO ILE PRO SER ILE THR TRP GLU HIS ALA GLY ARG TYR SEQRES 9 B 437 ARG CYS TYR TYR GLY SER ASP THR ALA GLY ARG SER GLU SEQRES 10 B 437 SER SER ASP PRO LEU GLU LEU VAL VAL THR GLY ALA TYR SEQRES 11 B 437 ILE LYS PRO THR LEU SER ALA GLN PRO SER PRO VAL VAL SEQRES 12 B 437 ASN SER GLY GLY ASN VAL ILE LEU GLN CYS ASP SER GLN SEQRES 13 B 437 VAL ALA PHE ASP GLY PHE SER LEU CYS LYS GLU GLY GLU SEQRES 14 B 437 ASP GLU HIS PRO GLN CYS LEU ASN SER GLN PRO HIS ALA SEQRES 15 B 437 ARG GLY SER SER ARG ALA ILE PHE SER VAL GLY PRO VAL SEQRES 16 B 437 SER PRO SER ARG ARG TRP TRP TYR ARG CYS TYR ALA TYR SEQRES 17 B 437 ASP SER ASN SER PRO TYR GLU TRP SER LEU PRO SER ASP SEQRES 18 B 437 LEU LEU GLU LEU LEU VAL LEU GLY VAL SER LYS LYS PRO SEQRES 19 B 437 SER LEU SER VAL GLN PRO GLY PRO ILE VAL ALA PRO GLU SEQRES 20 B 437 GLU THR LEU THR LEU GLN CYS GLY SER ASP ALA GLY TYR SEQRES 21 B 437 ASN ARG PHE VAL LEU TYR LYS ASP GLY GLU ARG ASP PHE SEQRES 22 B 437 LEU GLN LEU ALA GLY ALA GLN PRO GLN ALA GLY LEU SER SEQRES 23 B 437 GLN ALA ASN PHE THR LEU GLY PRO VAL SER ARG SER TYR SEQRES 24 B 437 GLY GLY GLN TYR ARG CYS TYR GLY ALA HIS ASN LEU SER SEQRES 25 B 437 SER GLU TRP SER ALA PRO SER ASP PRO LEU ASP ILE LEU SEQRES 26 B 437 ILE ALA GLY GLN PHE TYR ASP ARG VAL SER LEU SER VAL SEQRES 27 B 437 GLN PRO GLY PRO THR VAL ALA SER GLY GLU ASN VAL THR SEQRES 28 B 437 LEU LEU CYS GLN SER GLN GLY TRP MET GLN THR PHE LEU SEQRES 29 B 437 LEU THR LYS GLU GLY ALA ALA ASP ASP PRO TRP ARG LEU SEQRES 30 B 437 ARG SER THR TYR GLN SER GLN LYS TYR GLN ALA GLU PHE SEQRES 31 B 437 PRO MET GLY PRO VAL THR SER ALA HIS ALA GLY THR TYR SEQRES 32 B 437 ARG CYS TYR GLY SER GLN SER SER LYS PRO TYR LEU LEU SEQRES 33 B 437 THR HIS PRO SER ASP PRO LEU GLU LEU VAL VAL SER GLY SEQRES 34 B 437 THR LYS HIS HIS HIS HIS HIS HIS HET NAG C 1 14 HET NAG C 2 14 HET NAG B 501 14 HET NAG B 502 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 4(C8 H15 N O6) HELIX 1 AA1 ASN A 165 GLY A 182 1 18 HELIX 2 AA2 GLY A 185 GLY A 191 1 7 HELIX 3 AA3 ALA A 192 VAL A 198 5 7 HELIX 4 AA4 THR A 199 LYS A 205 1 7 HELIX 5 AA5 MET A 207 CYS A 221 1 15 HELIX 6 AA6 LEU A 222 LYS A 227 5 6 HELIX 7 AA7 GLU A 229 GLY A 234 1 6 HELIX 8 AA8 GLU A 241 ASP A 260 1 20 HELIX 9 AA9 ALA B 44 ILE B 50 5 7 HELIX 10 AB1 PRO B 51 LYS B 56 1 6 HELIX 11 AB2 ALA B 151 SER B 154 5 4 HELIX 12 AB3 SER B 265 GLY B 269 5 5 SHEET 1 AA1 3 THR B 7 GLU B 11 0 SHEET 2 AA1 3 VAL B 22 GLN B 27 -1 O ARG B 25 N TRP B 9 SHEET 3 AA1 3 GLN B 59 ILE B 62 -1 O ILE B 62 N VAL B 22 SHEET 1 AA2 4 VAL B 15 THR B 17 0 SHEET 2 AA2 4 LEU B 91 THR B 96 1 O THR B 96 N ILE B 16 SHEET 3 AA2 4 GLY B 71 TYR B 76 -1 N GLY B 71 O LEU B 93 SHEET 4 AA2 4 ARG B 36 ARG B 39 -1 N TYR B 38 O ARG B 74 SHEET 1 AA3 3 THR B 103 GLN B 107 0 SHEET 2 AA3 3 VAL B 118 ASP B 123 -1 O ILE B 119 N GLN B 107 SHEET 3 AA3 3 ARG B 156 VAL B 161 -1 O ALA B 157 N CYS B 122 SHEET 1 AA4 2 VAL B 111 ASN B 113 0 SHEET 2 AA4 2 LEU B 195 LEU B 197 1 O LEU B 195 N VAL B 112 SHEET 1 AA5 4 GLN B 143 SER B 147 0 SHEET 2 AA5 4 GLY B 130 GLU B 136 -1 N LEU B 133 O LEU B 145 SHEET 3 AA5 4 TRP B 171 TYR B 177 -1 O ARG B 173 N CYS B 134 SHEET 4 AA5 4 LEU B 192 GLU B 193 -1 O LEU B 192 N TYR B 172 SHEET 1 AA6 3 SER B 204 GLN B 208 0 SHEET 2 AA6 3 LEU B 219 SER B 225 -1 O GLN B 222 N SER B 206 SHEET 3 AA6 3 SER B 255 LEU B 261 -1 O ALA B 257 N CYS B 223 SHEET 1 AA7 5 ILE B 212 VAL B 213 0 SHEET 2 AA7 5 LEU B 291 ILE B 295 1 O LEU B 294 N VAL B 213 SHEET 3 AA7 5 GLY B 270 ALA B 277 -1 N GLY B 270 O ILE B 293 SHEET 4 AA7 5 ARG B 231 LYS B 236 -1 N TYR B 235 O ARG B 273 SHEET 5 AA7 5 LEU B 243 LEU B 245 -1 O LEU B 243 N LEU B 234 SHEET 1 AA8 4 SER B 304 VAL B 307 0 SHEET 2 AA8 4 ASN B 318 SER B 325 -1 O LEU B 322 N SER B 306 SHEET 3 AA8 4 LYS B 354 PRO B 363 -1 O PHE B 359 N LEU B 321 SHEET 4 AA8 4 THR B 349 GLN B 351 -1 N THR B 349 O GLN B 356 SHEET 1 AA9 5 THR B 312 VAL B 313 0 SHEET 2 AA9 5 LEU B 392 VAL B 396 1 O VAL B 395 N VAL B 313 SHEET 3 AA9 5 GLY B 370 SER B 377 -1 N GLY B 370 O LEU B 394 SHEET 4 AA9 5 THR B 331 LYS B 336 -1 N LEU B 333 O TYR B 375 SHEET 5 AA9 5 TRP B 344 ARG B 347 -1 O TRP B 344 N LEU B 334 SSBOND 1 CYS A 221 CYS A 232 1555 1555 2.05 SSBOND 2 CYS B 26 CYS B 75 1555 1555 2.10 SSBOND 3 CYS B 122 CYS B 174 1555 1555 2.04 SSBOND 4 CYS B 134 CYS B 144 1555 1555 2.05 SSBOND 5 CYS B 223 CYS B 274 1555 1555 2.03 SSBOND 6 CYS B 323 CYS B 374 1555 1555 2.04 LINK ND2 ASN B 258 C1 NAG B 501 1555 1555 1.46 LINK ND2 ASN B 279 C1 NAG B 502 1555 1555 1.47 LINK ND2 ASN B 318 C1 NAG C 1 1555 1555 1.56 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 CISPEP 1 GLU B 11 PRO B 12 0 6.64 CISPEP 2 GLN B 107 PRO B 108 0 4.96 CISPEP 3 GLN B 208 PRO B 209 0 4.77 CISPEP 4 GLY B 262 PRO B 263 0 -0.04 CRYST1 134.507 134.507 277.468 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007435 0.004292 0.000000 0.00000 SCALE2 0.000000 0.008585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003604 0.00000