HEADER HYDROLASE 15-JUN-20 6ZE1 TITLE HUMAN NBD1 OF CFTR IN COMPLEX WITH NANOBODY G11A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-BINDING CASSETTE SUB-FAMILY C MEMBER 7,CHANNEL COMPND 5 CONDUCTANCE-CONTROLLING ATPASE,CAMP-DEPENDENT CHLORIDE CHANNEL; COMPND 6 EC: 5.6.1.6; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: G11A NANOBODY; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CFTR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 10 ORGANISM_TAXID: 9844; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYSTIC FIBROSIS, CFTR, NANOBODIES, ALLOSTERY, CONFORMATIONAL CHANGE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GARCIA-PINO,C.GOVAERTS,D.SCHOLL,M.SIGOILLOT REVDAT 3 24-JAN-24 6ZE1 1 REMARK REVDAT 2 13-JUL-22 6ZE1 1 JRNL REVDAT 1 30-JUN-21 6ZE1 0 JRNL AUTH D.SCHOLL,M.SIGOILLOT,M.OVERTUS,R.C.MARTINEZ,C.MARTENS, JRNL AUTH 2 Y.WANG,E.PARDON,T.LAEREMANS,A.GARCIA-PINO,J.STEYAERT, JRNL AUTH 3 D.N.SHEPPARD,J.HENDRIX,C.GOVAERTS JRNL TITL A TOPOLOGICAL SWITCH IN CFTR MODULATES CHANNEL ACTIVITY AND JRNL TITL 2 SENSITIVITY TO UNFOLDING. JRNL REF NAT.CHEM.BIOL. V. 17 989 2021 JRNL REFN ESSN 1552-4469 JRNL PMID 34341587 JRNL DOI 10.1038/S41589-021-00844-0 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (20-MAY-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 109.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 50.6 REMARK 3 NUMBER OF REFLECTIONS : 7989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.360 REMARK 3 FREE R VALUE TEST SET COUNT : 428 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 20.00 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 371 REMARK 3 BIN R VALUE (WORKING SET) : 0.2429 REMARK 3 BIN FREE R VALUE : 0.2374 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.62 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2485 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.41570 REMARK 3 B22 (A**2) : 2.41570 REMARK 3 B33 (A**2) : -4.83140 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.410 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.495 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.895 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.848 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2561 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3472 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 835 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 436 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2539 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 344 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1956 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.65 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.73 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 67.9700 -14.6567 17.9162 REMARK 3 T TENSOR REMARK 3 T11: 0.1855 T22: -0.0056 REMARK 3 T33: -0.2751 T12: 0.0037 REMARK 3 T13: -0.0773 T23: -0.0554 REMARK 3 L TENSOR REMARK 3 L11: 1.3364 L22: 2.6488 REMARK 3 L33: 2.3743 L12: -1.5977 REMARK 3 L13: 0.8007 L23: -1.6191 REMARK 3 S TENSOR REMARK 3 S11: -0.3447 S12: 0.0761 S13: 0.3171 REMARK 3 S21: 0.0850 S22: 0.1065 S23: -0.0840 REMARK 3 S31: 0.2264 S32: 0.2412 S33: 0.2382 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 41.8983 -13.3190 -0.5139 REMARK 3 T TENSOR REMARK 3 T11: 0.1015 T22: -0.1745 REMARK 3 T33: -0.2772 T12: -0.0540 REMARK 3 T13: -0.0124 T23: -0.0853 REMARK 3 L TENSOR REMARK 3 L11: 5.2220 L22: 3.1175 REMARK 3 L33: 8.8719 L12: -0.1462 REMARK 3 L13: 2.8424 L23: -1.5036 REMARK 3 S TENSOR REMARK 3 S11: -0.2799 S12: 0.0120 S13: 0.0485 REMARK 3 S21: -0.0555 S22: 0.1705 S23: -0.0234 REMARK 3 S31: 0.0102 S32: -0.0576 S33: 0.1093 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109393. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7989 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.705 REMARK 200 RESOLUTION RANGE LOW (A) : 109.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6GJS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE 0.1 M TRIS 8.5 REMARK 280 25 % W/V PEG 4000, RT., PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.14300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.28600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.71450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 97.85750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.57150 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.14300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 78.28600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 97.85750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 58.71450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 19.57150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 386 REMARK 465 LEU A 387 REMARK 465 THR A 388 REMARK 465 THR A 389 REMARK 465 THR A 390 REMARK 465 GLU A 391 REMARK 465 VAL A 392 REMARK 465 VAL A 393 REMARK 465 MET A 394 REMARK 465 GLU A 395 REMARK 465 ASN A 396 REMARK 465 VAL A 397 REMARK 465 THR A 398 REMARK 465 ALA A 399 REMARK 465 PHE A 400 REMARK 465 TRP A 401 REMARK 465 GLU A 402 REMARK 465 GLU A 403 REMARK 465 GLY A 404 REMARK 465 PHE A 405 REMARK 465 GLY A 406 REMARK 465 GLU A 407 REMARK 465 LEU A 408 REMARK 465 PHE A 409 REMARK 465 GLU A 410 REMARK 465 LYS A 411 REMARK 465 ALA A 412 REMARK 465 LYS A 413 REMARK 465 GLN A 414 REMARK 465 ASN A 415 REMARK 465 ASN A 416 REMARK 465 ASN A 417 REMARK 465 ASN A 418 REMARK 465 ARG A 419 REMARK 465 LYS A 420 REMARK 465 THR A 421 REMARK 465 SER A 422 REMARK 465 PRO A 638 REMARK 465 ASP A 639 REMARK 465 PHE A 640 REMARK 465 SER A 641 REMARK 465 SER A 642 REMARK 465 LYS A 643 REMARK 465 LEU A 644 REMARK 465 MET A 645 REMARK 465 GLY A 646 REMARK 465 ALA B 123 REMARK 465 ALA B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 GLY B 131 REMARK 465 ALA B 132 REMARK 465 ALA B 133 REMARK 465 GLU B 134 REMARK 465 GLN B 135 REMARK 465 LYS B 136 REMARK 465 LEU B 137 REMARK 465 ILE B 138 REMARK 465 SER B 139 REMARK 465 GLU B 140 REMARK 465 GLU B 141 REMARK 465 ASP B 142 REMARK 465 LEU B 143 REMARK 465 ASN B 144 REMARK 465 GLY B 145 REMARK 465 ALA B 146 REMARK 465 ALA B 147 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 440 O REMARK 470 LYS A 442 CG CD CE NZ REMARK 470 THR A 460 OG1 CG2 REMARK 470 GLU A 479 CG CD OE1 OE2 REMARK 470 LYS A 481 CG CD CE NZ REMARK 470 LYS A 483 CE NZ REMARK 470 HIS A 484 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 485 OG REMARK 470 PHE A 494 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 503 CG CD CE NZ REMARK 470 ARG A 518 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 522 CG CD CE NZ REMARK 470 GLN A 525 CG CD OE1 NE2 REMARK 470 GLU A 527 CG CD OE1 OE2 REMARK 470 GLU A 528 CG CD OE1 OE2 REMARK 470 LYS A 532 CG CD CE NZ REMARK 470 GLU A 535 CG CD OE1 OE2 REMARK 470 LYS A 536 CE NZ REMARK 470 TYR A 577 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 584 CG CD CE NZ REMARK 470 GLU A 585 CG CD OE1 OE2 REMARK 470 GLU A 588 CG CD OE1 OE2 REMARK 470 LYS A 593 CD CE NZ REMARK 470 LYS A 606 CG CD CE NZ REMARK 470 MET A 607 SD CE REMARK 470 LYS A 611 CG CD CE NZ REMARK 470 LYS A 612 CG CD CE NZ REMARK 470 LYS A 615 CG CD CE NZ REMARK 470 GLU A 621 CG CD OE1 OE2 REMARK 470 LEU A 636 CG CD1 CD2 REMARK 470 GLN A 637 CG CD OE1 NE2 REMARK 470 GLN B 1 CG CD OE1 NE2 REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 GLN B 5 CG CD OE1 NE2 REMARK 470 ARG B 19 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 62 CG OD1 OD2 REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 GLN B 113 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 459 -179.75 -68.22 REMARK 500 GLU A 479 -122.57 44.30 REMARK 500 LYS A 483 -47.42 69.46 REMARK 500 HIS A 484 -127.07 43.35 REMARK 500 LYS A 536 -119.62 58.35 REMARK 500 SER A 573 66.47 36.63 REMARK 500 VAL B 48 -60.51 -104.57 REMARK 500 GLU B 65 24.75 46.91 REMARK 500 THR B 100 59.40 -143.33 REMARK 500 SER B 101 -169.44 -124.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 822 DISTANCE = 8.97 ANGSTROMS REMARK 525 HOH A 823 DISTANCE = 9.43 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ATP A 701 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 DBREF 6ZE1 A 387 646 UNP Q20BJ8 Q20BJ8_HUMAN 387 646 DBREF 6ZE1 B 1 147 PDB 6ZE1 6ZE1 1 147 SEQADV 6ZE1 SER A 386 UNP Q20BJ8 EXPRESSION TAG SEQADV 6ZE1 PRO A 492 UNP Q20BJ8 SER 492 ENGINEERED MUTATION SEQADV 6ZE1 PRO A 534 UNP Q20BJ8 ALA 534 ENGINEERED MUTATION SEQADV 6ZE1 THR A 539 UNP Q20BJ8 ILE 539 ENGINEERED MUTATION SEQRES 1 A 261 SER LEU THR THR THR GLU VAL VAL MET GLU ASN VAL THR SEQRES 2 A 261 ALA PHE TRP GLU GLU GLY PHE GLY GLU LEU PHE GLU LYS SEQRES 3 A 261 ALA LYS GLN ASN ASN ASN ASN ARG LYS THR SER ASN GLY SEQRES 4 A 261 ASP ASP SER LEU PHE PHE SER ASN PHE SER LEU LEU GLY SEQRES 5 A 261 THR PRO VAL LEU LYS ASP ILE ASN PHE LYS ILE GLU ARG SEQRES 6 A 261 GLY GLN LEU LEU ALA VAL ALA GLY SER THR GLY ALA GLY SEQRES 7 A 261 LYS THR SER LEU LEU MET MET ILE MET GLY GLU LEU GLU SEQRES 8 A 261 PRO SER GLU GLY LYS ILE LYS HIS SER GLY ARG ILE SER SEQRES 9 A 261 PHE CYS PRO GLN PHE SER TRP ILE MET PRO GLY THR ILE SEQRES 10 A 261 LYS GLU ASN ILE ILE PHE GLY VAL SER TYR ASP GLU TYR SEQRES 11 A 261 ARG TYR ARG SER VAL ILE LYS ALA CYS GLN LEU GLU GLU SEQRES 12 A 261 ASP ILE SER LYS PHE PRO GLU LYS ASP ASN THR VAL LEU SEQRES 13 A 261 GLY GLU GLY GLY ILE THR LEU SER GLY GLY GLN ARG ALA SEQRES 14 A 261 ARG ILE SER LEU ALA ARG ALA VAL TYR LYS ASP ALA ASP SEQRES 15 A 261 LEU TYR LEU LEU ASP SER PRO PHE GLY TYR LEU ASP VAL SEQRES 16 A 261 LEU THR GLU LYS GLU ILE PHE GLU SER CYS VAL CYS LYS SEQRES 17 A 261 LEU MET ALA ASN LYS THR ARG ILE LEU VAL THR SER LYS SEQRES 18 A 261 MET GLU HIS LEU LYS LYS ALA ASP LYS ILE LEU ILE LEU SEQRES 19 A 261 HIS GLU GLY SER SER TYR PHE TYR GLY THR PHE SER GLU SEQRES 20 A 261 LEU GLN ASN LEU GLN PRO ASP PHE SER SER LYS LEU MET SEQRES 21 A 261 GLY SEQRES 1 B 147 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY VAL VAL GLY SEQRES 2 B 147 PRO GLY GLY SER LEU ARG LEU ALA CYS ALA PHE SER GLY SEQRES 3 B 147 ARG THR PHE SER ASP TYR TRP MET ALA TRP PHE ARG GLN SEQRES 4 B 147 THR PRO GLY GLU GLU ARG ASP PHE VAL ALA ALA ILE SER SEQRES 5 B 147 ARG SER GLY ILE THR THR SER TYR GLY ASP PHE VAL GLU SEQRES 6 B 147 GLY ARG PHE THR ILE THR ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 147 VAL ASN LEU GLN MET ASN PHE LEU LYS PRO GLU ASP THR SEQRES 8 B 147 ALA ASP TYR TYR CYS ALA ALA GLY THR SER SER PHE LEU SEQRES 9 B 147 ARG ARG GLU TYR ASP TYR TRP GLY GLN GLY THR GLN VAL SEQRES 10 B 147 THR VAL SER SER ALA ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 11 B 147 GLY ALA ALA GLU GLN LYS LEU ILE SER GLU GLU ASP LEU SEQRES 12 B 147 ASN GLY ALA ALA HET ATP A 701 14 HET EDO A 702 4 HET EDO A 703 4 HET EDO B 201 4 HET GOL B 202 6 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *41(H2 O) HELIX 1 AA1 THR A 460 ALA A 462 5 3 HELIX 2 AA2 GLY A 463 GLU A 476 1 14 HELIX 3 AA3 ILE A 502 PHE A 508 1 7 HELIX 4 AA4 ASP A 513 CYS A 524 1 12 HELIX 5 AA5 LEU A 526 PHE A 533 1 8 HELIX 6 AA6 GLU A 535 ASN A 538 5 4 HELIX 7 AA7 SER A 549 LYS A 564 1 16 HELIX 8 AA8 ASP A 579 CYS A 590 1 12 HELIX 9 AA9 LYS A 606 LYS A 612 1 7 HELIX 10 AB1 THR A 629 GLN A 637 1 9 HELIX 11 AB2 THR B 28 TYR B 32 5 5 HELIX 12 AB3 LYS B 87 THR B 91 5 5 SHEET 1 AA1 8 ILE A 444 GLU A 449 0 SHEET 2 AA1 8 SER A 427 ASN A 432 -1 N ASN A 432 O ILE A 444 SHEET 3 AA1 8 THR B 57 TYR B 60 -1 O THR B 58 N PHE A 429 SHEET 4 AA1 8 ARG B 45 ILE B 51 -1 N ALA B 50 O SER B 59 SHEET 5 AA1 8 TRP B 33 GLN B 39 -1 N TRP B 36 O VAL B 48 SHEET 6 AA1 8 ALA B 92 GLY B 99 -1 O TYR B 95 N PHE B 37 SHEET 7 AA1 8 THR B 115 VAL B 119 -1 O THR B 115 N TYR B 94 SHEET 8 AA1 8 VAL B 11 VAL B 12 1 N VAL B 12 O THR B 118 SHEET 1 AA2 7 ILE A 444 GLU A 449 0 SHEET 2 AA2 7 SER A 427 ASN A 432 -1 N ASN A 432 O ILE A 444 SHEET 3 AA2 7 THR B 57 TYR B 60 -1 O THR B 58 N PHE A 429 SHEET 4 AA2 7 ARG B 45 ILE B 51 -1 N ALA B 50 O SER B 59 SHEET 5 AA2 7 TRP B 33 GLN B 39 -1 N TRP B 36 O VAL B 48 SHEET 6 AA2 7 ALA B 92 GLY B 99 -1 O TYR B 95 N PHE B 37 SHEET 7 AA2 7 TYR B 110 TRP B 111 -1 O TYR B 110 N ALA B 98 SHEET 1 AA3 6 ILE A 488 CYS A 491 0 SHEET 2 AA3 6 LEU A 568 ASP A 572 1 O LEU A 570 N CYS A 491 SHEET 3 AA3 6 ARG A 600 VAL A 603 1 O ILE A 601 N LEU A 571 SHEET 4 AA3 6 LEU A 453 GLY A 458 1 N LEU A 454 O LEU A 602 SHEET 5 AA3 6 LYS A 615 HIS A 620 1 O LEU A 619 N ALA A 457 SHEET 6 AA3 6 SER A 623 GLY A 628 -1 O TYR A 625 N ILE A 618 SHEET 1 AA4 2 GLY A 500 THR A 501 0 SHEET 2 AA4 2 VAL A 540 LEU A 541 -1 O LEU A 541 N GLY A 500 SHEET 1 AA5 3 GLY B 16 ALA B 23 0 SHEET 2 AA5 3 THR B 78 LEU B 86 -1 O MET B 83 N LEU B 18 SHEET 3 AA5 3 PHE B 68 ASP B 73 -1 N THR B 69 O GLN B 82 SITE 1 AC1 9 VAL A 440 THR A 460 GLY A 461 GLY A 463 SITE 2 AC1 9 LYS A 464 THR A 465 SER A 466 GLN A 493 SITE 3 AC1 9 ASP A 572 SITE 1 AC2 3 ASP A 426 SER A 427 TYR B 60 SITE 1 AC3 4 GLY A 451 ALA A 596 ASP A 614 ASN A 635 SITE 1 AC4 3 GLU B 43 ASP B 46 HOH B 306 SITE 1 AC5 1 THR B 69 CRYST1 126.949 126.949 117.429 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007877 0.004548 0.000000 0.00000 SCALE2 0.000000 0.009096 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008516 0.00000