HEADER TRANSPORT PROTEIN 23-JUN-20 6ZHF TITLE CALCIUM ATPASE-1 FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH BEF COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM-TRANSPORTING ATPASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CATION-TRANSPORTING ATPASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: A3R04_02860, A7B93_02035, A7E37_07960, A7T84_03145, SOURCE 5 A8N46_03115, A9303_08250, AA141_02585, AA38_03115, AA57_04345, SOURCE 6 AA58_04340, AAT23_05730, AAT89_01270, AAV13_08720, AC638_15100, SOURCE 7 ACX75_14550, AD67_04590, ADT87_13595, AE163_09080, AE275_03115, SOURCE 8 AF000_06545, AF016_12590, AF040_14630, AF045_14565, AF209_04695, SOURCE 9 AF234_14885, AFS24_04345, AFT50_03135, AFU02_10535, AFU61_04345, SOURCE 10 AFW07_04365, AFW50_00270, AFW67_02600, AFW77_02595, AFW96_04345, SOURCE 11 AFY00_02970, AFY08_04620, AFY14_04625, AK14_13510, AL416_02600, SOURCE 12 ALZ22_03115, AO083_04340, AOA99_03360, AOX92_14460, AOX97_03115, SOURCE 13 APD69_03345, APD94_04680, APE52_04350, APE55_04330, APE78_08730, SOURCE 14 APE79_10640, APS82_08405, APY22_11485, APY32_10565, AR034_01900, SOURCE 15 AR095_04345, ARG48_02025, ARG59_04340, ARG63_02035, ARG65_02035, SOURCE 16 ARG77_04695, ARG88_04330, ARH36_03115, ARH47_03115, ARH65_03115, SOURCE 17 ARK03_06875, ARQ26_09135, ARS01_02200, ARS03_11205, ARS22_01415, SOURCE 18 ARS28_14570, ARS93_04670, ART37_07935, ARX30_08235, ARX42_11895, SOURCE 19 ARX92_07785, ARY16_02855, ARZ28_06760, ARZ35_04215, AX342_04340, SOURCE 20 B1O05_03115, B1O10_11590, B1O28_10515, B4X86_08480, B6N70_00210, SOURCE 21 BG061_14125, BG923_10000, BGC67_07100, BHE45_01350, BHY47_13215, SOURCE 22 D1B71_01000, D3132_13730, D3B94_03440, D8W60_04330, DC65_04595, SOURCE 23 DRA50_03655, E0I17_04300, E0I30_11095, E0U16_02120, E1003_07560, SOURCE 24 E1013_04820, E1027_03585, E1029_14335, E1043_09385, E1052_08335, SOURCE 25 E1312_04595, E1520_02235, E1984_14165, E1P51_04330, E1P72_02110, SOURCE 26 E1S82_14615, E1S83_04140, E1S89_01415, E1S94_10525, E1T01_09845, SOURCE 27 E1T18_01060, E1T34_01085, E1T48_04575, E1T74_10380, E1U30_14270, SOURCE 28 E1U44_07385, E1U67_11485, E1U91_11060, E1V18_11470, E1V41_12830, SOURCE 29 E1V44_01000, E1V46_01695, E1V59_10805, E1V65_07835, E1V69_04540, SOURCE 30 E1W03_01325, E1W46_07930, E1W58_07000, E1W61_04670, E1W84_05640, SOURCE 31 E1X50_00065, E1X55_00065, E1X60_00065, E1X63_00065, E1X65_10050, SOURCE 32 E1X77_00065, E1Y04_07980, E1Y22_07260, E1Y36_10040, E1Y39_06885, SOURCE 33 E1Y54_04665, E1Y60_14085, E1Y76_10360, E1Y85_07210, E1Y87_04560, SOURCE 34 E1Z07_06265, E1Z13_07150, E1Z38_04405, E1Z70_06110, E1Z81_11410, SOURCE 35 E1Z94_06145, E2B22_10915, E2B94_09335, E2G00_14170, E3362_01060, SOURCE 36 E3W12_04070, E3W83_06115, E3Y59_01330, EFC17_14975, EFC32_14240, SOURCE 37 EHH67_01225, EID73_03115, EID74_03115, EL440_01100, ELF21_11070, SOURCE 38 ELL77_14930, EON24_08110, EVB16_07950, EVC89_14095, EX531_05960, SOURCE 39 EYJ23_03110, EYJ25_09250, EZ544_07110, EZ549_04550, EZ567_04430, SOURCE 40 EZ579_10250, EZ585_00065, EZJ50_04320, F2B64_09785, F9O35_02210, SOURCE 41 FDO43_01425, FDP94_12205, FJL09_07065, FJL15_09360, FJL32_05590, SOURCE 42 FJL36_07055, FJU16_09110, FL790_12360, FMU94_04385, FMZ78_07455, SOURCE 43 FORC68_0870, FPD59_04610, FR205_09240, FR217_09360, GCV90_03275, SOURCE 44 GT55_11320, GU61_02025, GU73_02025, GX56_09050, GX92_03115, SOURCE 45 GY66_03115, GY90_03605, HL26_09525, HL28_10595, HN15_02035, SOURCE 46 IA39_04370, ID69_03115, IU04_04610, IX93_03955, JJ01_03115, SOURCE 47 JL21_03115, JU65_09035, LJ99_03115, MY31_04390, NB32_00070, SOURCE 48 NB83_10590, NI81_01900, OJ48_06380, Q842_09175, Q988_10290, SOURCE 49 R014_10950, R016_03115, RI86_13235, SH19_04830, TS11_06645, SOURCE 50 TS76_03180, TS78_02750, TX39_14805, TX56_02090, TX65_02090, SOURCE 51 UA79_03115, UL23_02205, UL40_07420, UL41_04355, WN76_13220, SOURCE 52 X855_03115, XN56_04310, XN57_03335, XN85_12310, XN87_03395, SOURCE 53 Y170_01010, Y243_04300, Y473_03115, Y519_03115, Y529_03115, SOURCE 54 Z603_10025, Z676_02255, Z689_01060; SOURCE 55 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 56 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 57 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 58 EXPRESSION_SYSTEM_PLASMID: PET-22B KEYWDS P-TYPE ATPASE CALCIUM PUMP LISTERIA MONOCYTOGENES, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.BASSE HANSEN,M.DYLA,C.NEUMANN,E.M.H.QUISTGAARD,J.LAUWRING ANDERSEN, AUTHOR 2 M.KJAERGAARD,P.NISSEN REVDAT 3 24-JAN-24 6ZHF 1 REMARK REVDAT 2 28-JUL-21 6ZHF 1 JRNL REVDAT 1 19-MAY-21 6ZHF 0 JRNL AUTH S.B.HANSEN,M.DYLA,C.NEUMANN,E.M.H.QUISTGAARD,J.L.ANDERSEN, JRNL AUTH 2 M.KJAERGAARD,P.NISSEN JRNL TITL THE CRYSTAL STRUCTURE OF THE CA 2+ -ATPASE 1 FROM LISTERIA JRNL TITL 2 MONOCYTOGENES REVEALS A PUMP PRIMED FOR DEPHOSPHORYLATION. JRNL REF J.MOL.BIOL. V. 433 67015 2021 JRNL REFN ESSN 1089-8638 JRNL PMID 33933469 JRNL DOI 10.1016/J.JMB.2021.167015 REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 13224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3910 - 6.8348 0.96 2602 143 0.1858 0.2146 REMARK 3 2 6.8348 - 5.4273 0.98 2536 128 0.2721 0.3612 REMARK 3 3 5.4273 - 4.7420 0.98 2501 130 0.2547 0.3205 REMARK 3 4 4.7420 - 4.3087 0.97 2442 125 0.2456 0.3417 REMARK 3 5 4.3087 - 4.0000 0.99 2484 133 0.2869 0.3195 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.580 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 169.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 1:41 OR RESID 111:221 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.676 63.871 -99.130 REMARK 3 T TENSOR REMARK 3 T11: 1.2351 T22: 1.4460 REMARK 3 T33: 1.4655 T12: -0.0013 REMARK 3 T13: -0.1080 T23: -0.1415 REMARK 3 L TENSOR REMARK 3 L11: 2.0811 L22: 3.7246 REMARK 3 L33: 2.1652 L12: -0.6279 REMARK 3 L13: -0.1867 L23: 0.9721 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: -0.5174 S13: -0.3468 REMARK 3 S21: 0.0857 S22: 0.2552 S23: -1.2073 REMARK 3 S31: 0.0898 S32: 0.6241 S33: -0.2716 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 313:342 OR RESID 529:665 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.702 35.862 -109.790 REMARK 3 T TENSOR REMARK 3 T11: 1.2002 T22: 1.3260 REMARK 3 T33: 1.2041 T12: 0.0044 REMARK 3 T13: 0.0117 T23: 0.0715 REMARK 3 L TENSOR REMARK 3 L11: 2.7470 L22: 2.3431 REMARK 3 L33: 3.5229 L12: 0.6465 REMARK 3 L13: -0.3346 L23: 0.9026 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: -0.8492 S13: -0.4344 REMARK 3 S21: 0.5873 S22: -0.0665 S23: -0.1063 REMARK 3 S31: 0.5082 S32: 0.4949 S33: 0.0684 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 343:528 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.678 46.216 -81.331 REMARK 3 T TENSOR REMARK 3 T11: 1.9493 T22: 2.6521 REMARK 3 T33: 1.6367 T12: 0.4268 REMARK 3 T13: -0.1141 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.4402 L22: 1.1021 REMARK 3 L33: 1.2616 L12: 0.3746 REMARK 3 L13: -0.3000 L23: 0.2863 REMARK 3 S TENSOR REMARK 3 S11: -0.2382 S12: -1.4053 S13: 0.5600 REMARK 3 S21: 0.4962 S22: 0.1962 S23: 0.4746 REMARK 3 S31: -0.3445 S32: -0.1710 S33: 0.1001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 42:110 OR RESID 222:312 OR REMARK 3 RESID 666:880 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.739 28.236 -147.962 REMARK 3 T TENSOR REMARK 3 T11: 0.8664 T22: 0.9712 REMARK 3 T33: 1.1222 T12: 0.0087 REMARK 3 T13: -0.0156 T23: -0.1495 REMARK 3 L TENSOR REMARK 3 L11: 1.9866 L22: 1.0865 REMARK 3 L33: 2.4170 L12: -0.5576 REMARK 3 L13: 0.2589 L23: 0.0274 REMARK 3 S TENSOR REMARK 3 S11: 0.0515 S12: 0.2159 S13: -0.2948 REMARK 3 S21: 0.0847 S22: 0.0146 S23: -0.1017 REMARK 3 S31: 0.1971 S32: 0.1279 S33: -0.0173 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZHF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292106772. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13285 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.000 REMARK 200 RESOLUTION RANGE LOW (A) : 57.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ZHH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG6000, 3% T-BUOH, 100MM LISO4, REMARK 280 5MM BME, 100MM KCL, 19MM C8E4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.52500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.92850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.52500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 71.92850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ASP A 881 REMARK 465 TYR A 882 REMARK 465 ASP A 883 REMARK 465 ILE A 884 REMARK 465 PRO A 885 REMARK 465 THR A 886 REMARK 465 THR A 887 REMARK 465 GLU A 888 REMARK 465 ASN A 889 REMARK 465 LEU A 890 REMARK 465 TYR A 891 REMARK 465 PHE A 892 REMARK 465 GLN A 893 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 334 F2 BEF A 902 1.98 REMARK 500 O LEU A 379 NH1 ARG A 420 2.18 REMARK 500 CG ASP A 334 BE BEF A 902 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 8 -79.26 -70.03 REMARK 500 GLU A 16 18.01 47.58 REMARK 500 ASN A 37 66.44 -105.99 REMARK 500 ASP A 45 54.36 37.42 REMARK 500 LEU A 47 -1.95 68.83 REMARK 500 GLU A 75 75.82 -103.40 REMARK 500 ALA A 112 66.80 60.52 REMARK 500 GLU A 153 112.64 -161.01 REMARK 500 THR A 209 -166.27 -79.14 REMARK 500 SER A 268 -136.70 58.39 REMARK 500 PRO A 320 -7.78 -58.00 REMARK 500 ASN A 342 -6.52 69.84 REMARK 500 GLU A 361 -80.93 -72.35 REMARK 500 ASN A 407 38.11 -92.91 REMARK 500 ILE A 424 63.64 34.12 REMARK 500 ARG A 430 -7.90 72.84 REMARK 500 ASN A 440 -119.97 54.87 REMARK 500 LYS A 468 -154.71 61.88 REMARK 500 GLU A 473 -0.06 65.08 REMARK 500 ALA A 594 -100.34 57.59 REMARK 500 ASN A 626 5.85 -64.55 REMARK 500 ASP A 658 13.24 57.15 REMARK 500 LEU A 710 -19.99 73.53 REMARK 500 PHE A 878 -6.26 74.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 334 OD2 REMARK 620 2 THR A 336 O 86.2 REMARK 620 3 ASP A 623 OD1 89.6 91.3 REMARK 620 4 HOH A1001 O 94.7 178.8 87.9 REMARK 620 5 HOH A1002 O 175.7 89.9 92.2 89.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A 902 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 334 OD1 REMARK 620 2 BEF A 902 F1 129.6 REMARK 620 3 BEF A 902 F2 83.2 112.8 REMARK 620 4 BEF A 902 F3 109.5 110.2 107.3 REMARK 620 N 1 2 3 DBREF1 6ZHF A 2 880 UNP A0A1C7PY84_LISMN DBREF2 6ZHF A A0A1C7PY84 2 880 SEQADV 6ZHF MET A 0 UNP A0A1C7PY8 INITIATING METHIONINE SEQADV 6ZHF ALA A 1 UNP A0A1C7PY8 EXPRESSION TAG SEQADV 6ZHF ASP A 881 UNP A0A1C7PY8 EXPRESSION TAG SEQADV 6ZHF TYR A 882 UNP A0A1C7PY8 EXPRESSION TAG SEQADV 6ZHF ASP A 883 UNP A0A1C7PY8 EXPRESSION TAG SEQADV 6ZHF ILE A 884 UNP A0A1C7PY8 EXPRESSION TAG SEQADV 6ZHF PRO A 885 UNP A0A1C7PY8 EXPRESSION TAG SEQADV 6ZHF THR A 886 UNP A0A1C7PY8 EXPRESSION TAG SEQADV 6ZHF THR A 887 UNP A0A1C7PY8 EXPRESSION TAG SEQADV 6ZHF GLU A 888 UNP A0A1C7PY8 EXPRESSION TAG SEQADV 6ZHF ASN A 889 UNP A0A1C7PY8 EXPRESSION TAG SEQADV 6ZHF LEU A 890 UNP A0A1C7PY8 EXPRESSION TAG SEQADV 6ZHF TYR A 891 UNP A0A1C7PY8 EXPRESSION TAG SEQADV 6ZHF PHE A 892 UNP A0A1C7PY8 EXPRESSION TAG SEQADV 6ZHF GLN A 893 UNP A0A1C7PY8 EXPRESSION TAG SEQRES 1 A 894 MET ALA GLU ILE TYR ARG LYS SER ALA ALA GLU THR PHE SEQRES 2 A 894 THR GLN LEU GLU ALA THR GLU LYS GLY LEU THR THR SER SEQRES 3 A 894 GLU VAL THR LYS ARG GLN GLU LYS TYR GLY PHE ASN GLU SEQRES 4 A 894 LEU LYS ASN LYS LYS LYS ASP PRO LEU TRP LYS LEU PHE SEQRES 5 A 894 LEU GLU THR PHE LYS ASP PRO MET VAL ILE VAL LEU VAL SEQRES 6 A 894 ILE ALA ALA LEU VAL GLN LEU VAL LEU GLY GLU VAL VAL SEQRES 7 A 894 GLU SER LEU ILE ILE PHE LEU VAL LEU ILE VAL ASN SER SEQRES 8 A 894 ILE ILE SER VAL VAL GLN THR ARG LYS ALA GLU SER SER SEQRES 9 A 894 LEU ASP ALA LEU ARG GLU MET SER ALA PRO VAL ALA LYS SEQRES 10 A 894 VAL ILE ARG ASP GLY SER LYS GLN SER ILE HIS ALA ARG SEQRES 11 A 894 GLU LEU VAL PRO GLY ASP VAL VAL ILE LEU ASP ALA GLY SEQRES 12 A 894 ASP PHE VAL PRO ALA ASP GLY ARG LEU PHE GLU SER GLY SEQRES 13 A 894 SER LEU LYS ILE ASP GLU GLY MET LEU THR GLY GLU SER SEQRES 14 A 894 GLU ALA VAL GLU LYS TYR ILE ASP THR ILE PRO ASP GLU SEQRES 15 A 894 VAL GLY LEU GLY ASP ARG VAL ASN MET VAL PHE SER GLY SEQRES 16 A 894 SER LEU VAL VAL TYR GLY ARG GLY MET PHE VAL VAL THR SEQRES 17 A 894 GLY THR ALA SER GLU THR GLU ILE GLY LYS ILE ALA GLY SEQRES 18 A 894 LEU LEU GLU THR ALA GLU ALA LYS GLN THR PRO LEU GLN SEQRES 19 A 894 ARG LYS LEU GLU SER PHE SER LYS LYS LEU GLY LEU GLY SEQRES 20 A 894 ILE LEU ALA LEU CYS VAL LEU ILE PHE ALA VAL GLU ALA SEQRES 21 A 894 GLY ARG VAL LEU LEU GLY ASP ASN SER ALA ASP MET ALA SEQRES 22 A 894 THR ALA ILE LEU ASN ALA PHE MET PHE ALA VAL ALA VAL SEQRES 23 A 894 ALA VAL ALA ALA ILE PRO GLU ALA LEU SER SER ILE VAL SEQRES 24 A 894 THR ILE VAL LEU ALA VAL GLY THR ASN LYS MET ALA LYS SEQRES 25 A 894 GLN HIS ALA ILE ILE ARG LYS LEU PRO ALA VAL GLU THR SEQRES 26 A 894 LEU GLY SER THR SER VAL ILE CYS THR ASP LYS THR GLY SEQRES 27 A 894 THR LEU THR GLN ASN LYS MET THR VAL VAL ASP TYR TYR SEQRES 28 A 894 LEU PRO ASP GLY THR LYS GLU ASN PHE PRO GLU SER PRO SEQRES 29 A 894 GLU ASN TRP SER GLU GLY GLU ARG ARG LEU ILE HIS ILE SEQRES 30 A 894 ALA VAL LEU CYS ASN ASP SER ASN ILE ASN SER GLU GLY SEQRES 31 A 894 LYS GLU LEU GLY ASP PRO THR GLU VAL ALA LEU ILE ALA SEQRES 32 A 894 PHE SER ASN LYS ASN ASN GLN ASP TYR ASN GLU ILE ARG SEQRES 33 A 894 GLU LYS PHE ILE ARG GLU GLY GLU ILE PRO PHE ASP SER SEQRES 34 A 894 ASP ARG LYS LEU MET SER THR LEU HIS THR PHE ASN GLU SEQRES 35 A 894 ASN LYS ALA MET LEU THR LYS GLY GLY PRO ASP VAL MET SEQRES 36 A 894 PHE ALA ARG CYS SER TYR VAL PHE LEU ASP GLY GLU GLU SEQRES 37 A 894 LYS PRO MET THR GLU GLU ILE LEU ALA LYS LEU LYS GLU SEQRES 38 A 894 THR ASN GLU GLU PHE SER ASN GLN ALA LEU ARG VAL LEU SEQRES 39 A 894 ALA TYR GLY TYR LYS ARG MET PRO ALA ASP THR THR GLU SEQRES 40 A 894 LEU LYS LEU GLU ASP GLU GLN ASP ILE VAL LEU VAL GLY SEQRES 41 A 894 LEU THR ALA MET ILE ASP PRO PRO ARG GLU ALA VAL TYR SEQRES 42 A 894 ALA SER ILE GLU GLU SER LYS LYS ALA GLY ILE ARG THR SEQRES 43 A 894 VAL MET ILE THR GLY ASP HIS LYS THR THR ALA GLN ALA SEQRES 44 A 894 ILE GLY ARG ASP ILE GLY LEU MET ASP ALA ASP ASP ILE SEQRES 45 A 894 ALA LEU THR GLY GLN GLU LEU ASP ALA MET PRO GLU GLU SEQRES 46 A 894 GLU LEU ASP LYS LYS LEU GLU HIS ILE ALA VAL TYR ALA SEQRES 47 A 894 ARG VAL SER PRO GLU ASN LYS ILE ARG ILE VAL LYS ALA SEQRES 48 A 894 TRP GLN LYS LYS GLY LYS ILE THR ALA MET THR GLY ASP SEQRES 49 A 894 GLY VAL ASN ASP ALA PRO ALA LEU LYS GLN ALA ASP ILE SEQRES 50 A 894 GLY VAL ALA MET GLY SER GLY THR ASP VAL ALA LYS ASP SEQRES 51 A 894 SER ALA ALA MET ILE LEU THR ASP ASP ASN PHE VAL SER SEQRES 52 A 894 ILE VAL ASP ALA VAL GLY VAL GLY ARG THR VAL PHE ASP SEQRES 53 A 894 ASN ILE LYS LYS SER ILE ALA TYR LEU PHE ALA GLY ASN SEQRES 54 A 894 LEU GLY ALA ILE ILE ALA ILE LEU PHE ALA LEU VAL LEU SEQRES 55 A 894 ASP TRP ILE ASN PRO PHE THR ALA LEU GLN LEU LEU PHE SEQRES 56 A 894 ILE ASN LEU VAL ASN ASP SER LEU PRO ALA ILE ALA LEU SEQRES 57 A 894 GLY MET GLU LYS ALA GLU PRO ASP VAL MET LYS ARG LYS SEQRES 58 A 894 PRO ARG ASP ILE ASN GLU GLY ILE PHE ALA GLY GLY THR SEQRES 59 A 894 MET ARG ALA VAL ILE SER ARG GLY VAL LEU ILE GLY ILE SEQRES 60 A 894 ALA VAL ILE ILE SER GLN TYR ILE GLY MET GLN ILE SER SEQRES 61 A 894 PRO GLU MET SER VAL ALA MET ALA PHE THR THR LEU ILE SEQRES 62 A 894 LEU ALA ARG THR LEU GLN THR PHE ALA ALA ARG SER ASN SEQRES 63 A 894 VAL GLN THR ALA PHE GLY ALA GLY PHE PHE SER ASN LYS SEQRES 64 A 894 TYR VAL ILE GLY ALA VAL LEU LEU CYS PHE VAL LEU TYR SEQRES 65 A 894 GLY ILE THR VAL LEU PRO GLY ALA ARG GLU ILE PHE SER SEQRES 66 A 894 ILE PRO ALA SER PHE GLY LEU HIS GLU TRP SER ILE ALA SEQRES 67 A 894 ALA GLY LEU ALA LEU ALA ALA VAL VAL MET MET GLU ILE SEQRES 68 A 894 ILE LYS VAL VAL GLN ASN LYS PHE PHE LYS ASP TYR ASP SEQRES 69 A 894 ILE PRO THR THR GLU ASN LEU TYR PHE GLN HET MG A 901 1 HET BEF A 902 4 HETNAM MG MAGNESIUM ION HETNAM BEF BERYLLIUM TRIFLUORIDE ION FORMUL 2 MG MG 2+ FORMUL 3 BEF BE F3 1- FORMUL 4 HOH *2(H2 O) HELIX 1 AA1 SER A 7 LEU A 15 1 9 HELIX 2 AA2 THR A 23 GLY A 35 1 13 HELIX 3 AA3 LEU A 47 THR A 54 1 8 HELIX 4 AA4 ASP A 57 LEU A 73 1 17 HELIX 5 AA5 VAL A 76 LYS A 99 1 24 HELIX 6 AA6 SER A 103 GLU A 109 1 7 HELIX 7 AA7 MET A 110 ALA A 112 5 3 HELIX 8 AA8 GLU A 161 GLY A 166 1 6 HELIX 9 AA9 THR A 213 ALA A 225 1 13 HELIX 10 AB1 THR A 230 ARG A 261 1 32 HELIX 11 AB2 ASP A 270 ILE A 290 1 21 HELIX 12 AB3 ALA A 293 LYS A 311 1 19 HELIX 13 AB4 PRO A 320 THR A 328 1 9 HELIX 14 AB5 ARG A 371 ASN A 381 1 11 HELIX 15 AB6 ASP A 394 ASN A 407 1 14 HELIX 16 AB7 GLY A 450 PHE A 455 1 6 HELIX 17 AB8 ALA A 476 GLN A 488 1 13 HELIX 18 AB9 LEU A 509 GLN A 513 5 5 HELIX 19 AC1 TYR A 532 ALA A 541 1 10 HELIX 20 AC2 HIS A 552 ASP A 562 1 11 HELIX 21 AC3 GLY A 575 ALA A 580 1 6 HELIX 22 AC4 PRO A 582 LEU A 590 1 9 HELIX 23 AC5 SER A 600 GLY A 615 1 16 HELIX 24 AC6 ASP A 627 ALA A 634 1 8 HELIX 25 AC7 THR A 644 ALA A 651 1 8 HELIX 26 AC8 PHE A 660 LEU A 701 1 42 HELIX 27 AC9 LEU A 710 VAL A 718 1 9 HELIX 28 AD1 ASP A 720 MET A 729 1 10 HELIX 29 AD2 GLU A 733 MET A 737 5 5 HELIX 30 AD3 GLY A 752 SER A 779 1 28 HELIX 31 AD4 SER A 779 ALA A 802 1 24 HELIX 32 AD5 ASN A 817 LEU A 836 1 20 HELIX 33 AD6 GLY A 850 VAL A 873 1 24 SHEET 1 AA1 2 ALA A 115 ARG A 119 0 SHEET 2 AA1 2 SER A 122 ILE A 126 -1 O GLN A 124 N VAL A 117 SHEET 1 AA2 4 VAL A 136 ASP A 140 0 SHEET 2 AA2 4 LEU A 196 VAL A 206 -1 O GLY A 202 N LEU A 139 SHEET 3 AA2 4 GLY A 149 ASP A 160 -1 N ARG A 150 O VAL A 205 SHEET 4 AA2 4 VAL A 171 GLU A 172 -1 O VAL A 171 N ILE A 159 SHEET 1 AA3 4 VAL A 136 ASP A 140 0 SHEET 2 AA3 4 LEU A 196 VAL A 206 -1 O GLY A 202 N LEU A 139 SHEET 3 AA3 4 GLY A 149 ASP A 160 -1 N ARG A 150 O VAL A 205 SHEET 4 AA3 4 MET A 190 VAL A 191 -1 O VAL A 191 N GLY A 149 SHEET 1 AA4 6 ALA A 314 ILE A 316 0 SHEET 2 AA4 6 MET A 653 LEU A 655 -1 O ILE A 654 N ILE A 315 SHEET 3 AA4 6 ILE A 636 ALA A 639 1 N GLY A 637 O MET A 653 SHEET 4 AA4 6 THR A 618 GLY A 622 1 N MET A 620 O VAL A 638 SHEET 5 AA4 6 VAL A 330 THR A 333 1 N CYS A 332 O ALA A 619 SHEET 6 AA4 6 ARG A 544 MET A 547 1 O VAL A 546 N ILE A 331 SHEET 1 AA5 5 THR A 345 TYR A 350 0 SHEET 2 AA5 5 GLY A 519 ILE A 524 -1 O ILE A 524 N THR A 345 SHEET 3 AA5 5 ARG A 491 GLY A 496 -1 N ARG A 491 O MET A 523 SHEET 4 AA5 5 THR A 447 GLY A 449 -1 N THR A 447 O GLY A 496 SHEET 5 AA5 5 MET A 433 SER A 434 -1 N MET A 433 O LYS A 448 SHEET 1 AA6 2 ASN A 384 ILE A 385 0 SHEET 2 AA6 2 GLU A 391 LEU A 392 -1 O LEU A 392 N ASN A 384 SHEET 1 AA7 2 HIS A 437 PHE A 439 0 SHEET 2 AA7 2 ASN A 442 ALA A 444 -1 O ALA A 444 N HIS A 437 SHEET 1 AA8 2 CYS A 458 TYR A 460 0 SHEET 2 AA8 2 ILE A 515 VAL A 516 1 O ILE A 515 N SER A 459 LINK OD2 ASP A 334 MG MG A 901 1555 1555 1.89 LINK OD1 ASP A 334 BE BEF A 902 1555 1555 1.41 LINK O THR A 336 MG MG A 901 1555 1555 2.09 LINK OD1 ASP A 623 MG MG A 901 1555 1555 2.14 LINK MG MG A 901 O HOH A1001 1555 1555 2.04 LINK MG MG A 901 O HOH A1002 1555 1555 2.31 CRYST1 69.050 143.857 153.856 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014482 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006500 0.00000