HEADER HYDROLASE 26-JUN-20 6ZIZ TITLE CRYSTAL STRUCTURE OF NRAS Q61R IN COMPLEX WITH GTP AND COMPOUND 18 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE NRAS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRANSFORMING PROTEIN N-RAS; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GTPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KESSLER,G.FISCHER,J.BOETTCHER REVDAT 3 31-JAN-24 6ZIZ 1 REMARK REVDAT 2 25-NOV-20 6ZIZ 1 JRNL REVDAT 1 19-AUG-20 6ZIZ 0 JRNL AUTH D.KESSLER,A.BERGNER,J.BOTTCHER,G.FISCHER,S.DOBEL,M.HINKEL, JRNL AUTH 2 B.MULLAUER,A.WEISS-PUXBAUM,D.B.MCCONNELL JRNL TITL DRUGGING ALL RAS ISOFORMS WITH ONE POCKET. JRNL REF FUTURE MED CHEM V. 12 1911 2020 JRNL REFN ISSN 1756-8927 JRNL PMID 32779487 JRNL DOI 10.4155/FMC-2020-0221 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 (3-OCT-2019) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 62.3 REMARK 3 NUMBER OF REFLECTIONS : 25104 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1213 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2703 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.45270 REMARK 3 B33 (A**2) : -0.41280 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.29360 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.310 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.234 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.166 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.678 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.162 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5713 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10282 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1777 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 927 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2926 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 380 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4522 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.45 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.57 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 24.3693 -0.9477 37.3527 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 35.0948 -10.7854 9.7411 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZIZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC, XDS (VERSION JAN 26 REMARK 200 DATA SCALING SOFTWARE : AUTOPROC (VERSION 1.1.7), REMARK 200 STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25105 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.785 REMARK 200 RESOLUTION RANGE LOW (A) : 54.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.17100 REMARK 200 R SYM (I) : 0.17100 REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.98800 REMARK 200 R SYM FOR SHELL (I) : 0.98800 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ZIO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS BUFFER 1 100MM PH=6.6 REMARK 280 MORPHEUS MONOSACHARIDES 14% P550MME_P20K 32%, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.91450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.89500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.91450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.89500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 LEU A 171 REMARK 465 ASN A 172 REMARK 465 GLY B 0 REMARK 465 LYS B 170 REMARK 465 LEU B 171 REMARK 465 ASN B 172 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 154 HG1 THR B 158 1.54 REMARK 500 O ASP A 154 HG1 THR A 158 1.54 REMARK 500 OE1 GLU A 37 H20 EZZ A 203 1.58 REMARK 500 OE1 GLU B 37 H20 EZZ B 203 1.60 REMARK 500 O HOH A 301 O HOH A 382 2.11 REMARK 500 O HOH A 407 O HOH B 374 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -65.37 -95.42 REMARK 500 GLU A 37 120.34 -173.29 REMARK 500 SER A 65 12.98 -69.13 REMARK 500 LYS A 117 38.28 73.77 REMARK 500 ILE B 36 -65.27 -95.00 REMARK 500 GLU B 37 120.34 -173.79 REMARK 500 SER B 65 12.32 -68.62 REMARK 500 LYS B 117 37.69 74.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 459 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 460 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 461 DISTANCE = 9.48 ANGSTROMS REMARK 525 HOH A 462 DISTANCE = 11.62 ANGSTROMS REMARK 525 HOH A 463 DISTANCE = 12.34 ANGSTROMS REMARK 525 HOH A 464 DISTANCE = 12.54 ANGSTROMS REMARK 525 HOH A 465 DISTANCE = 13.49 ANGSTROMS REMARK 525 HOH B 426 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B 427 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH B 428 DISTANCE = 9.41 ANGSTROMS REMARK 525 HOH B 429 DISTANCE = 10.20 ANGSTROMS REMARK 525 HOH B 430 DISTANCE = 11.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 80.0 REMARK 620 3 GTP A 201 O1G 166.6 88.1 REMARK 620 4 GTP A 201 O2B 93.5 171.9 97.7 REMARK 620 5 HOH A 320 O 87.4 88.6 86.2 86.2 REMARK 620 6 HOH A 325 O 87.0 92.6 99.8 92.0 173.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 THR B 35 OG1 78.6 REMARK 620 3 GTP B 201 O3G 167.8 89.2 REMARK 620 4 GTP B 201 O1B 94.1 172.1 98.1 REMARK 620 5 HOH B 306 O 88.8 86.8 91.7 90.0 REMARK 620 6 HOH B 317 O 83.5 92.4 96.0 89.8 172.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EZZ A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EZZ B 203 DBREF 6ZIZ A 1 172 UNP P01111 RASN_HUMAN 1 172 DBREF 6ZIZ B 1 172 UNP P01111 RASN_HUMAN 1 172 SEQADV 6ZIZ GLY A 0 UNP P01111 EXPRESSION TAG SEQADV 6ZIZ ARG A 61 UNP P01111 GLN 61 ENGINEERED MUTATION SEQADV 6ZIZ SER A 118 UNP P01111 CYS 118 CONFLICT SEQADV 6ZIZ GLY B 0 UNP P01111 EXPRESSION TAG SEQADV 6ZIZ ARG B 61 UNP P01111 GLN 61 ENGINEERED MUTATION SEQADV 6ZIZ SER B 118 UNP P01111 CYS 118 CONFLICT SEQRES 1 A 173 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 173 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 173 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 173 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 A 173 LEU LEU ASP ILE LEU ASP THR ALA GLY ARG GLU GLU TYR SEQRES 6 A 173 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 173 PHE LEU CYS VAL PHE ALA ILE ASN ASN SER LYS SER PHE SEQRES 8 A 173 ALA ASP ILE ASN LEU TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 173 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 173 LYS SER ASP LEU PRO THR ARG THR VAL ASP THR LYS GLN SEQRES 11 A 173 ALA HIS GLU LEU ALA LYS SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 173 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 A 173 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN TYR ARG MET SEQRES 14 A 173 LYS LYS LEU ASN SEQRES 1 B 173 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 B 173 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 B 173 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 B 173 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 B 173 LEU LEU ASP ILE LEU ASP THR ALA GLY ARG GLU GLU TYR SEQRES 6 B 173 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 B 173 PHE LEU CYS VAL PHE ALA ILE ASN ASN SER LYS SER PHE SEQRES 8 B 173 ALA ASP ILE ASN LEU TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 B 173 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 B 173 LYS SER ASP LEU PRO THR ARG THR VAL ASP THR LYS GLN SEQRES 11 B 173 ALA HIS GLU LEU ALA LYS SER TYR GLY ILE PRO PHE ILE SEQRES 12 B 173 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 B 173 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN TYR ARG MET SEQRES 14 B 173 LYS LYS LEU ASN HET GTP A 201 32 HET MG A 202 1 HET EZZ A 203 43 HET GTP B 201 32 HET MG B 202 1 HET EZZ B 203 43 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM EZZ (3~{S})-3-[2-[(DIMETHYLAMINO)METHYL]-1~{H}-INDOL-3-YL]- HETNAM 2 EZZ 5-OXIDANYL-2,3-DIHYDROISOINDOL-1-ONE FORMUL 3 GTP 2(C10 H16 N5 O14 P3) FORMUL 4 MG 2(MG 2+) FORMUL 5 EZZ 2(C19 H19 N3 O2) FORMUL 9 HOH *295(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 ARG A 61 SER A 65 5 5 HELIX 3 AA3 MET A 67 GLY A 75 1 9 HELIX 4 AA4 ASN A 86 ASP A 105 1 20 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 LYS A 170 1 20 HELIX 7 AA7 GLY B 15 ASN B 26 1 12 HELIX 8 AA8 ARG B 61 SER B 65 5 5 HELIX 9 AA9 MET B 67 GLY B 75 1 9 HELIX 10 AB1 ASN B 86 ASP B 105 1 20 HELIX 11 AB2 ASP B 126 GLY B 138 1 13 HELIX 12 AB3 GLY B 151 LYS B 169 1 19 SHEET 1 AA112 PHE A 141 GLU A 143 0 SHEET 2 AA112 MET A 111 ASN A 116 1 N LEU A 113 O ILE A 142 SHEET 3 AA112 GLY A 77 ALA A 83 1 N CYS A 80 O VAL A 114 SHEET 4 AA112 THR A 2 VAL A 9 1 N VAL A 9 O VAL A 81 SHEET 5 AA112 GLU A 49 THR A 58 1 O LEU A 56 N LEU A 6 SHEET 6 AA112 GLU A 37 ILE A 46 -1 N LYS A 42 O LEU A 53 SHEET 7 AA112 GLU B 37 ILE B 46 -1 O SER B 39 N SER A 39 SHEET 8 AA112 GLU B 49 THR B 58 -1 O LEU B 53 N LYS B 42 SHEET 9 AA112 THR B 2 VAL B 9 1 N LEU B 6 O LEU B 56 SHEET 10 AA112 GLY B 77 ALA B 83 1 O VAL B 81 N VAL B 9 SHEET 11 AA112 MET B 111 ASN B 116 1 O VAL B 114 N CYS B 80 SHEET 12 AA112 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 LINK OG SER A 17 MG MG A 202 1555 1555 2.12 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.06 LINK O1G GTP A 201 MG MG A 202 1555 1555 2.21 LINK O2B GTP A 201 MG MG A 202 1555 1555 2.13 LINK MG MG A 202 O HOH A 320 1555 1555 2.23 LINK MG MG A 202 O HOH A 325 1555 1555 2.15 LINK OG SER B 17 MG MG B 202 1555 1555 2.18 LINK OG1 THR B 35 MG MG B 202 1555 1555 2.08 LINK O3G GTP B 201 MG MG B 202 1555 1555 2.10 LINK O1B GTP B 201 MG MG B 202 1555 1555 2.18 LINK MG MG B 202 O HOH B 306 1555 1555 2.30 LINK MG MG B 202 O HOH B 317 1555 1555 2.20 SITE 1 AC1 27 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 27 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 27 VAL A 29 ASP A 30 TYR A 32 PRO A 34 SITE 4 AC1 27 THR A 35 GLY A 60 ASN A 116 LYS A 117 SITE 5 AC1 27 ASP A 119 LEU A 120 SER A 145 ALA A 146 SITE 6 AC1 27 MG A 202 HOH A 316 HOH A 320 HOH A 325 SITE 7 AC1 27 HOH A 338 HOH A 347 HOH A 380 SITE 1 AC2 5 SER A 17 THR A 35 GTP A 201 HOH A 320 SITE 2 AC2 5 HOH A 325 SITE 1 AC3 9 LYS A 5 VAL A 7 GLU A 37 ASP A 54 SITE 2 AC3 9 LEU A 56 ARG A 73 THR A 74 GLY A 75 SITE 3 AC3 9 HOH A 379 SITE 1 AC4 25 GLY B 12 GLY B 13 VAL B 14 GLY B 15 SITE 2 AC4 25 LYS B 16 SER B 17 ALA B 18 PHE B 28 SITE 3 AC4 25 VAL B 29 ASP B 30 TYR B 32 PRO B 34 SITE 4 AC4 25 THR B 35 GLY B 60 ASN B 116 LYS B 117 SITE 5 AC4 25 ASP B 119 LEU B 120 SER B 145 ALA B 146 SITE 6 AC4 25 MG B 202 HOH B 317 HOH B 320 HOH B 339 SITE 7 AC4 25 HOH B 341 SITE 1 AC5 5 SER B 17 THR B 35 GTP B 201 HOH B 306 SITE 2 AC5 5 HOH B 317 SITE 1 AC6 8 LYS B 5 VAL B 7 GLU B 37 ASP B 54 SITE 2 AC6 8 LEU B 56 TYR B 71 THR B 74 GLY B 75 CRYST1 115.829 45.790 86.045 90.00 111.28 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008633 0.000000 0.003363 0.00000 SCALE2 0.000000 0.021839 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012472 0.00000