HEADER HYDROLASE 29-JUN-20 6ZJP TITLE COLD-ADAPTED BETA-D-GALACTOSIDASE FROM ARTHROBACTER SP. 32CB MUTANT TITLE 2 E517Q COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GALACTOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.23; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER SP. 32CB; SOURCE 3 ORGANISM_TAXID: 1492190; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GALACTOSIDASE, COLD-ADAPTED, PSYCHROPHILIC, DIMERIC, MUTANT, LOSS OF KEYWDS 2 FUNCTION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.RUTKIEWICZ,A.BUJACZ,G.BUJACZ REVDAT 3 31-JAN-24 6ZJP 1 REMARK REVDAT 2 12-AUG-20 6ZJP 1 JRNL REVDAT 1 05-AUG-20 6ZJP 0 JRNL AUTH M.RUTKIEWICZ,M.WANARSKA,A.BUJACZ JRNL TITL MAPPING THE TRANSGLYCOSYLATION RELEVANT SITES OF JRNL TITL 2 COLD-ADAPTED BETA-D-GALACTOSIDASE FROMARTHROBACTERSP. 32CB. JRNL REF INT J MOL SCI V. 21 2020 JRNL REFN ESSN 1422-0067 JRNL PMID 32731412 JRNL DOI 10.3390/IJMS21155354 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.RUTKIEWICZ,A.BUJACZ,M.WANARSKA,A.WIERZBICKA-WOS, REMARK 1 AUTH 2 H.CIESLINSKI REMARK 1 TITL ACTIVE SITE ARCHITECTURE AND REACTION MECHANISM REMARK 1 TITL 2 DETERMINATION OF COLD ADAPTED BETA-D-GALACTOSIDASE FROM REMARK 1 REF INT J MOL SCI V. 20 2019 REMARK 1 REFN ESSN 1422-0067 REMARK 1 DOI 10.3390/IJMS20174301 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 118264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.770 REMARK 3 FREE R VALUE TEST SET COUNT : 2096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5520 - 4.5580 0.96 7846 143 0.1360 0.1495 REMARK 3 2 4.5580 - 3.6184 0.98 7767 140 0.1211 0.1345 REMARK 3 3 3.6184 - 3.1611 0.99 7827 141 0.1553 0.1888 REMARK 3 4 3.1611 - 2.8722 0.99 7703 139 0.1773 0.2245 REMARK 3 5 2.8722 - 2.6663 0.99 7764 140 0.1760 0.2123 REMARK 3 6 2.6663 - 2.5091 1.00 7793 141 0.1716 0.2039 REMARK 3 7 2.5091 - 2.3835 1.00 7764 140 0.1688 0.1989 REMARK 3 8 2.3835 - 2.2797 1.00 7776 141 0.1690 0.2571 REMARK 3 9 2.2797 - 2.1920 1.00 7742 139 0.1727 0.2132 REMARK 3 10 2.1920 - 2.1164 1.00 7766 140 0.1809 0.2272 REMARK 3 11 2.1164 - 2.0502 1.00 7744 139 0.2002 0.2041 REMARK 3 12 2.0502 - 1.9916 1.00 7741 140 0.2116 0.2390 REMARK 3 13 1.9916 - 1.9391 0.99 7676 137 0.2368 0.2577 REMARK 3 14 1.9391 - 1.8918 0.99 7670 139 0.2622 0.3047 REMARK 3 15 1.8918 - 1.8500 0.97 7589 137 0.2980 0.3153 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7817 REMARK 3 ANGLE : 0.744 10659 REMARK 3 CHIRALITY : 0.084 1132 REMARK 3 PLANARITY : 0.005 1434 REMARK 3 DIHEDRAL : 16.087 4578 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 567 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3427 31.5037 34.9419 REMARK 3 T TENSOR REMARK 3 T11: 0.3838 T22: 0.1919 REMARK 3 T33: 0.3060 T12: 0.0195 REMARK 3 T13: 0.0183 T23: 0.0623 REMARK 3 L TENSOR REMARK 3 L11: 0.9736 L22: 0.4703 REMARK 3 L33: 1.2996 L12: -0.3560 REMARK 3 L13: -0.1926 L23: 0.0983 REMARK 3 S TENSOR REMARK 3 S11: -0.0832 S12: -0.1345 S13: -0.1669 REMARK 3 S21: 0.1100 S22: 0.1345 S23: 0.1211 REMARK 3 S31: 0.3146 S32: -0.0956 S33: -0.0022 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 568 THROUGH 789 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.4888 19.8012 1.5248 REMARK 3 T TENSOR REMARK 3 T11: 0.4914 T22: 0.2018 REMARK 3 T33: 0.3455 T12: 0.0551 REMARK 3 T13: -0.0039 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 1.0478 L22: 0.8194 REMARK 3 L33: 1.4283 L12: -0.6492 REMARK 3 L13: 0.4645 L23: -0.1391 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.0674 S13: -0.1308 REMARK 3 S21: -0.0179 S22: -0.0085 S23: 0.0930 REMARK 3 S31: 0.3565 S32: 0.1461 S33: 0.0004 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 790 THROUGH 1010 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.5094 22.5420 -11.6579 REMARK 3 T TENSOR REMARK 3 T11: 0.4315 T22: 0.2674 REMARK 3 T33: 0.3608 T12: 0.0616 REMARK 3 T13: -0.0461 T23: -0.0818 REMARK 3 L TENSOR REMARK 3 L11: 1.2089 L22: 0.9266 REMARK 3 L33: 1.2773 L12: -0.4642 REMARK 3 L13: 0.4539 L23: -0.3419 REMARK 3 S TENSOR REMARK 3 S11: 0.2037 S12: 0.2425 S13: -0.2066 REMARK 3 S21: -0.1757 S22: -0.1539 S23: 0.1017 REMARK 3 S31: 0.4000 S32: 0.1466 S33: 0.0132 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9814 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 118428 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.849 REMARK 200 RESOLUTION RANGE LOW (A) : 43.552 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.944 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.72900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6ETZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% TACSIMATE TM PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.40633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.81267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 84.81267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.40633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 68770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 VAL A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 PRO A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 ASP A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 PRO A 14 REMARK 465 HIS A 15 REMARK 465 THR A 16 REMARK 465 ALA A 17 REMARK 465 PRO A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 23 CB CG CD NE CZ NH1 NH2 REMARK 470 ASP A1001 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 77 58.76 -107.97 REMARK 500 ASN A 110 -79.01 -88.63 REMARK 500 GLU A 118 67.02 -151.67 REMARK 500 ASP A 205 42.26 -93.22 REMARK 500 MET A 208 -179.77 -173.34 REMARK 500 ALA A 521 40.96 -100.07 REMARK 500 HIS A 553 41.57 -87.28 REMARK 500 ASP A 584 42.15 -142.53 REMARK 500 TRP A 773 40.58 -72.36 REMARK 500 GLU A 778 38.11 -99.72 REMARK 500 SER A 819 -157.31 -157.59 REMARK 500 THR A 982 35.44 -143.58 REMARK 500 CYS A 985 103.08 -162.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2243 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A2244 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A2245 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A2246 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A2247 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A2248 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A2249 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A2250 DISTANCE = 6.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 207 OD2 REMARK 620 2 PHE A 581 O 139.3 REMARK 620 3 ASP A 584 OD2 140.9 77.6 REMARK 620 4 HOH A1598 O 85.5 109.9 93.2 REMARK 620 5 HOH A1681 O 75.3 104.7 83.4 143.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1103 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 393 OE2 REMARK 620 2 GLU A 441 OE2 97.7 REMARK 620 3 HOH A1269 O 162.4 96.3 REMARK 620 4 HOH A1275 O 76.3 173.0 90.3 REMARK 620 5 HOH A1570 O 72.9 93.9 95.5 87.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 914 O REMARK 620 2 LEU A 954 O 95.5 REMARK 620 3 ASP A 955 O 158.9 79.4 REMARK 620 4 ALA A 957 O 103.9 96.2 97.0 REMARK 620 5 HOH A1753 O 114.4 149.9 73.8 73.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1104 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ETZ RELATED DB: PDB REMARK 900 RELATED ID: 6SE8 RELATED DB: PDB REMARK 900 RELATED ID: 6SE9 RELATED DB: PDB REMARK 900 RELATED ID: 6SEA RELATED DB: PDB REMARK 900 RELATED ID: 6SEB RELATED DB: PDB REMARK 900 RELATED ID: 6SEC RELATED DB: PDB REMARK 900 RELATED ID: 6SED RELATED DB: PDB REMARK 900 RELATED ID: 6H1P RELATED DB: PDB DBREF1 6ZJP A 1 1010 UNP A0A023UGN9_9MICC DBREF2 6ZJP A A0A023UGN9 1 1010 SEQADV 6ZJP GLN A 517 UNP A0A023UGN GLU 517 ENGINEERED MUTATION SEQRES 1 A 1010 MET SER VAL GLU THR PRO SER ALA LEU ALA ASP SER SER SEQRES 2 A 1010 PRO HIS THR ALA PRO GLY SER ALA GLY ARG SER LEU GLU SEQRES 3 A 1010 LEU GLY ALA ALA ASP ILE GLN ASP LEU GLU SER PHE GLU SEQRES 4 A 1010 ALA GLY ARG GLY ALA LEU PRO ALA ARG ALA TYR LEU GLN SEQRES 5 A 1010 SER ASP ALA PRO ARG LEU SER LEU ASN GLY GLU TRP GLN SEQRES 6 A 1010 PHE ARG LEU SER PRO GLY SER ARG VAL ALA PRO ASP ASP SEQRES 7 A 1010 GLY TRP GLN LEU GLY GLU ALA LEU ASN GLY PHE GLU SER SEQRES 8 A 1010 LEU PRO VAL PRO SER SER TRP PRO MET HIS GLY HIS GLY SEQRES 9 A 1010 ALA PRO ALA TYR THR ASN VAL GLN PHE PRO PHE ALA VAL SEQRES 10 A 1010 GLU PRO PRO HIS VAL PRO GLU ALA ASN PRO ILE GLY ASP SEQRES 11 A 1010 HIS LEU VAL VAL PHE GLU ALA GLY PRO GLU PHE PHE PRO SEQRES 12 A 1010 HIS ALA LEU LEU ARG PHE ASP GLY ILE GLU SER ALA GLY SEQRES 13 A 1010 THR VAL TRP LEU ASN GLY VAL GLU LEU GLY THR THR ARG SEQRES 14 A 1010 GLY SER ARG LEU ALA HIS GLU PHE ASP VAL SER GLY ILE SEQRES 15 A 1010 LEU GLU GLN GLY GLU ASN THR LEU ALA VAL ARG VAL ALA SEQRES 16 A 1010 GLN PHE SER ALA ALA SER TYR VAL GLU ASP GLN ASP MET SEQRES 17 A 1010 TRP TRP LEU PRO GLY ILE PHE ARG ASP VAL THR LEU GLN SEQRES 18 A 1010 ALA ARG PRO ALA ALA GLY ILE ASP ASP VAL PHE VAL HIS SEQRES 19 A 1010 ALA GLY TYR ASP HIS ILE THR GLY GLU GLY ILE LEU LYS SEQRES 20 A 1010 VAL GLU ALA SER ARG GLY GLY GLN ALA ILE ASP ALA VAL SEQRES 21 A 1010 VAL ARG VAL PRO GLU LEU ALA LEU GLU LEU ALA ALA GLY SEQRES 22 A 1010 THR GLU VAL ARG VAL PRO ALA VAL GLU PRO TRP SER ALA SEQRES 23 A 1010 GLU VAL PRO LYS LEU TYR GLU ALA ALA VAL SER ALA ALA SEQRES 24 A 1010 GLY GLU SER VAL ALA LEU GLN ILE GLY PHE ARG SER ILE SEQRES 25 A 1010 ALA ILE GLU ASP ALA GLN PHE LYS VAL ASN GLY ARG ARG SEQRES 26 A 1010 ILE LEU LEU ARG GLY VAL ASN ARG HIS GLU HIS HIS PRO SEQRES 27 A 1010 ARG LEU GLY ARG VAL VAL PRO ARG ASP VAL VAL GLU ALA SEQRES 28 A 1010 GLU LEU ARG LEU MET LYS GLN HIS ASN ILE ASN ALA ILE SEQRES 29 A 1010 ARG THR SER HIS TYR PRO PRO HIS PRO GLN PHE LEU ALA SEQRES 30 A 1010 LEU ALA ASP GLN LEU GLY PHE TYR VAL VAL LEU GLU CYS SEQRES 31 A 1010 ASP LEU GLU THR HIS GLY PHE GLU SER ALA GLY TRP ALA SEQRES 32 A 1010 GLN ASN PRO SER ASP ASP PRO GLN TRP GLU ASP ALA LEU SEQRES 33 A 1010 VAL ASP ARG MET ARG ARG THR VAL GLU ARG ASP LYS ASN SEQRES 34 A 1010 HIS ALA SER VAL VAL MET TRP SER LEU GLY ASN GLU ALA SEQRES 35 A 1010 GLY THR GLY ARG ASN LEU ALA ALA MET SER ARG TRP THR SEQRES 36 A 1010 LYS ASP ARG ASP PRO SER ARG PRO ILE HIS TYR GLU GLY SEQRES 37 A 1010 ASP TRP SER SER GLU HIS VAL ASP VAL TYR SER ARG MET SEQRES 38 A 1010 TYR ALA SER GLN ALA GLU THR ALA LEU ILE GLY GLN GLY SEQRES 39 A 1010 ILE GLU PRO ALA LEU ASN ASP ALA ALA LEU ASP ALA ARG SEQRES 40 A 1010 ARG ARG ALA MET PRO PHE VAL LEU CYS GLN TYR VAL HIS SEQRES 41 A 1010 ALA MET GLY ASN GLY PRO GLY GLY MET SER GLU TYR GLN SEQRES 42 A 1010 ALA LEU PHE GLU LYS TYR PRO ARG LEU MET GLY GLY PHE SEQRES 43 A 1010 VAL TRP GLU TRP LEU GLU HIS GLY ILE THR VAL SER THR SEQRES 44 A 1010 ALA ASP GLY VAL ASP HIS TYR GLY TYR GLY GLY ASP PHE SEQRES 45 A 1010 GLY GLU GLU VAL HIS ASP GLY ASN PHE VAL THR ASP GLY SEQRES 46 A 1010 LEU VAL ASP ALA ASP ARG ARG PRO ARG PRO GLY LEU LEU SEQRES 47 A 1010 ASP PHE LYS LYS VAL ILE GLU PRO LEU ARG ILE ASP VAL SEQRES 48 A 1010 ALA ARG ASP TRP THR GLY PHE THR LEU ARG ASN GLY GLN SEQRES 49 A 1010 ASP PHE ALA ASP THR SER ALA PHE SER PHE ARG TYR GLU SEQRES 50 A 1010 VAL GLU ALA ASP GLY GLY ALA LEU ASP GLY GLY THR VAL SEQRES 51 A 1010 ASP VAL ALA PRO VAL ALA PRO GLN SER GLU THR VAL VAL SEQRES 52 A 1010 GLU LEU PRO GLY SER VAL ALA ALA LEU ALA ALA GLY LEU SEQRES 53 A 1010 SER ASP GLY ARG PRO ALA VAL LEU THR VAL ARG ALA VAL SEQRES 54 A 1010 LEU GLY ALA ASP SER ALA TRP ALA ASP ALA GLY HIS GLU SEQRES 55 A 1010 VAL ALA TRP GLY GLN SER VAL ARG GLU PRO GLY ALA PRO SEQRES 56 A 1010 VAL PRO PRO ALA PRO VAL GLU PRO VAL GLN VAL GLN ASP SEQRES 57 A 1010 SER GLU LEU THR LEU GLY PRO VAL VAL PHE SER ARG ALA SEQRES 58 A 1010 THR GLY MET PRO THR SER ILE GLY GLY VAL PRO VAL GLU SEQRES 59 A 1010 LYS LEU GLY LEU THR LEU TRP TRP ALA PRO THR ASP ASN SEQRES 60 A 1010 ASP LEU GLY ARG GLU TRP GLY GLY ALA ASP GLU ARG PRO SEQRES 61 A 1010 LEU ALA THR GLN TRP LYS ASP ALA GLY LEU ASN ARG LEU SEQRES 62 A 1010 HIS THR ARG LEU LEU GLY ILE SER ALA ASN PRO GLY GLN SEQRES 63 A 1010 ASP GLY GLY GLU THR LEU THR VAL ARG THR ARG VAL SER SEQRES 64 A 1010 ALA ALA ASP LYS GLN TYR GLY VAL LEU VAL ASP TYR THR SEQRES 65 A 1010 TRP SER THR ASP GLY GLU THR VAL GLY LEU ARG THR GLN SEQRES 66 A 1010 VAL ARG ARG ASP GLY THR TRP VAL ASN ARG GLY PHE GLU SEQRES 67 A 1010 VAL GLU TRP ALA ARG ILE GLY LEU GLU PHE VAL LEU GLY SEQRES 68 A 1010 GLU GLU THR GLU LEU VAL SER TRP PHE GLY GLN GLY PRO SEQRES 69 A 1010 HIS GLN SER TYR PRO ASP THR GLY GLN GLY ALA ARG ALA SEQRES 70 A 1010 GLY TRP PHE SER LEU PRO LEU ALA LYS MET ASP VAL GLU SEQRES 71 A 1010 TYR VAL ARG PRO GLN GLU CYS GLY ALA ARG SER GLY SER SEQRES 72 A 1010 ARG SER ALA ALA LEU GLN LEU GLY GLY ARG THR LEU GLU SEQRES 73 A 1010 ILE CYS GLY ASP PRO PHE ALA LEU THR VAL ARG PRO TYR SEQRES 74 A 1010 SER GLN ASP VAL LEU ASP ALA ALA ALA HIS ARG PRO ASP SEQRES 75 A 1010 LEU LYS ALA ASP GLY ARG THR TYR LEU TYR VAL ASP HIS SEQRES 76 A 1010 ALA LEU ARG GLY VAL GLY THR ALA ALA CYS GLY PRO GLY SEQRES 77 A 1010 VAL LEU GLU GLN TYR ARG LEU LYS PRO ARG ASP ALA ASP SEQRES 78 A 1010 PHE ILE LEU THR LEU LYS VAL ARG SER HET NA A1101 1 HET NA A1102 1 HET NA A1103 1 HET ACT A1104 4 HETNAM NA SODIUM ION HETNAM ACT ACETATE ION FORMUL 2 NA 3(NA 1+) FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *1050(H2 O) HELIX 1 AA1 GLY A 28 GLU A 36 1 9 HELIX 2 AA2 GLY A 71 ALA A 75 5 5 HELIX 3 AA3 GLY A 79 GLY A 83 5 5 HELIX 4 AA4 SER A 97 GLY A 102 5 6 HELIX 5 AA5 GLY A 138 PHE A 142 5 5 HELIX 6 AA6 SER A 198 GLU A 204 5 7 HELIX 7 AA7 PRO A 264 ALA A 267 5 4 HELIX 8 AA8 PRO A 345 HIS A 359 1 15 HELIX 9 AA9 GLN A 374 GLY A 383 1 10 HELIX 10 AB1 THR A 394 GLY A 401 5 8 HELIX 11 AB2 ASN A 405 GLN A 411 5 7 HELIX 12 AB3 TRP A 412 LYS A 428 1 17 HELIX 13 AB4 GLY A 445 ASP A 459 1 15 HELIX 14 AB5 SER A 484 GLN A 493 1 10 HELIX 15 AB6 ASP A 501 ALA A 510 1 10 HELIX 16 AB7 GLY A 528 TYR A 539 1 12 HELIX 17 AB8 ASP A 578 THR A 583 5 6 HELIX 18 AB9 ARG A 594 ILE A 604 1 11 HELIX 19 AC1 PRO A 666 LEU A 676 1 11 HELIX 20 AC2 ASP A 766 GLY A 770 5 5 HELIX 21 AC3 PRO A 780 GLY A 789 1 10 HELIX 22 AC4 ALA A 905 ASP A 908 5 4 HELIX 23 AC5 SER A 950 ALA A 957 1 8 HELIX 24 AC6 HIS A 959 LEU A 963 5 5 HELIX 25 AC7 LEU A 990 ARG A 994 5 5 SHEET 1 AA1 5 GLN A 52 SER A 53 0 SHEET 2 AA1 5 SER A 302 ILE A 307 -1 O ALA A 304 N GLN A 52 SHEET 3 AA1 5 TYR A 292 SER A 297 -1 N ALA A 294 O LEU A 305 SHEET 4 AA1 5 VAL A 260 VAL A 263 -1 N ARG A 262 O ALA A 295 SHEET 5 AA1 5 LEU A 268 ALA A 271 -1 O LEU A 270 N VAL A 261 SHEET 1 AA2 4 ARG A 57 SER A 59 0 SHEET 2 AA2 4 VAL A 218 ALA A 222 -1 O LEU A 220 N LEU A 58 SHEET 3 AA2 4 ALA A 145 PHE A 149 -1 N ARG A 148 O THR A 219 SHEET 4 AA2 4 HIS A 175 ASP A 178 -1 O HIS A 175 N PHE A 149 SHEET 1 AA3 6 GLU A 90 VAL A 94 0 SHEET 2 AA3 6 GLY A 62 SER A 69 -1 N GLY A 62 O VAL A 94 SHEET 3 AA3 6 ILE A 128 ALA A 137 -1 O ASP A 130 N ARG A 67 SHEET 4 AA3 6 GLY A 186 ALA A 195 -1 O VAL A 194 N GLY A 129 SHEET 5 AA3 6 ALA A 155 LEU A 160 -1 N TRP A 159 O ALA A 191 SHEET 6 AA3 6 VAL A 163 THR A 168 -1 O LEU A 165 N VAL A 158 SHEET 1 AA4 2 ALA A 107 THR A 109 0 SHEET 2 AA4 2 MET A 208 TRP A 210 -1 O TRP A 210 N ALA A 107 SHEET 1 AA5 3 ASP A 230 TYR A 237 0 SHEET 2 AA5 3 GLY A 244 ARG A 252 -1 O GLU A 249 N PHE A 232 SHEET 3 AA5 3 GLN A 255 ALA A 256 -1 O GLN A 255 N ARG A 252 SHEET 1 AA6 3 ASP A 230 TYR A 237 0 SHEET 2 AA6 3 GLY A 244 ARG A 252 -1 O GLU A 249 N PHE A 232 SHEET 3 AA6 3 VAL A 276 VAL A 278 -1 O VAL A 278 N GLY A 244 SHEET 1 AA7 3 ILE A 312 GLU A 315 0 SHEET 2 AA7 3 GLN A 318 VAL A 321 -1 O LYS A 320 N ALA A 313 SHEET 3 AA7 3 ARG A 324 ARG A 325 -1 O ARG A 324 N VAL A 321 SHEET 1 AA8 8 ILE A 464 HIS A 465 0 SHEET 2 AA8 8 VAL A 433 SER A 437 1 N TRP A 436 O HIS A 465 SHEET 3 AA8 8 TYR A 385 GLU A 389 1 N VAL A 386 O VAL A 434 SHEET 4 AA8 8 ALA A 363 ARG A 365 1 N ILE A 364 O VAL A 387 SHEET 5 AA8 8 LEU A 328 ASN A 332 1 N VAL A 331 O ARG A 365 SHEET 6 AA8 8 LEU A 542 VAL A 547 1 O MET A 543 N LEU A 328 SHEET 7 AA8 8 PHE A 513 TYR A 518 1 N PHE A 513 O MET A 543 SHEET 8 AA8 8 TYR A 478 MET A 481 1 N TYR A 478 O VAL A 514 SHEET 1 AA9 2 ILE A 555 SER A 558 0 SHEET 2 AA9 2 ASP A 564 GLY A 567 -1 O HIS A 565 N VAL A 557 SHEET 1 AB1 3 LEU A 607 VAL A 611 0 SHEET 2 AB1 3 GLY A 617 ASN A 622 -1 O THR A 619 N ASP A 610 SHEET 3 AB1 3 GLU A 660 GLU A 664 -1 O VAL A 663 N PHE A 618 SHEET 1 AB2 4 ALA A 644 VAL A 650 0 SHEET 2 AB2 4 PHE A 632 ALA A 640 -1 N VAL A 638 O ASP A 646 SHEET 3 AB2 4 ALA A 682 LEU A 690 -1 O VAL A 689 N SER A 633 SHEET 4 AB2 4 GLU A 702 ARG A 710 -1 O ARG A 710 N ALA A 682 SHEET 1 AB313 GLN A 725 VAL A 726 0 SHEET 2 AB313 GLU A 730 LEU A 733 -1 O THR A 732 N GLN A 725 SHEET 3 AB313 VAL A 736 SER A 739 -1 O PHE A 738 N LEU A 731 SHEET 4 AB313 PRO A 745 ILE A 748 -1 O THR A 746 N VAL A 737 SHEET 5 AB313 VAL A 751 THR A 759 -1 O VAL A 753 N THR A 746 SHEET 6 AB313 ARG A 863 LEU A 870 -1 O VAL A 869 N LYS A 755 SHEET 7 AB313 THR A 969 LEU A 977 -1 O LEU A 971 N PHE A 868 SHEET 8 AB313 ARG A 933 ARG A 947 -1 N THR A 945 O TYR A 972 SHEET 9 AB313 ALA A1000 ARG A1009 -1 O LYS A1007 N GLU A 936 SHEET 10 AB313 VAL A 840 ASP A 849 -1 N VAL A 846 O ALA A1000 SHEET 11 AB313 GLY A 826 THR A 835 -1 N SER A 834 O GLY A 841 SHEET 12 AB313 GLU A 810 ALA A 820 -1 N LEU A 812 O TRP A 833 SHEET 13 AB313 LEU A 793 PRO A 804 -1 N HIS A 794 O SER A 819 SHEET 1 AB411 GLN A 725 VAL A 726 0 SHEET 2 AB411 GLU A 730 LEU A 733 -1 O THR A 732 N GLN A 725 SHEET 3 AB411 VAL A 736 SER A 739 -1 O PHE A 738 N LEU A 731 SHEET 4 AB411 PRO A 745 ILE A 748 -1 O THR A 746 N VAL A 737 SHEET 5 AB411 VAL A 751 THR A 759 -1 O VAL A 753 N THR A 746 SHEET 6 AB411 ARG A 863 LEU A 870 -1 O VAL A 869 N LYS A 755 SHEET 7 AB411 THR A 969 LEU A 977 -1 O LEU A 971 N PHE A 868 SHEET 8 AB411 ARG A 933 ARG A 947 -1 N THR A 945 O TYR A 972 SHEET 9 AB411 ARG A 920 LEU A 930 -1 N LEU A 928 O LEU A 935 SHEET 10 AB411 LEU A 876 GLY A 883 -1 N SER A 878 O ALA A 927 SHEET 11 AB411 ARG A 896 PRO A 903 -1 O PHE A 900 N TRP A 879 SHEET 1 AB5 2 VAL A 853 ASN A 854 0 SHEET 2 AB5 2 PHE A 857 GLU A 858 -1 O PHE A 857 N ASN A 854 LINK OD2 ASP A 207 NA NA A1101 1555 1555 2.40 LINK OE2 GLU A 393 NA NA A1103 1555 1555 2.22 LINK OE2 GLU A 441 NA NA A1103 1555 1555 2.15 LINK O PHE A 581 NA NA A1101 1555 1555 2.47 LINK OD2 ASP A 584 NA NA A1101 1555 1555 2.42 LINK O PRO A 914 NA NA A1102 1555 1555 2.53 LINK O LEU A 954 NA NA A1102 1555 1555 2.62 LINK O ASP A 955 NA NA A1102 1555 1555 2.82 LINK O ALA A 957 NA NA A1102 1555 1555 2.48 LINK NA NA A1101 O HOH A1598 1555 1555 2.58 LINK NA NA A1101 O HOH A1681 1555 1555 3.03 LINK NA NA A1102 O HOH A1753 1555 1555 2.91 LINK NA NA A1103 O HOH A1269 1555 1555 2.38 LINK NA NA A1103 O HOH A1275 1555 1555 2.30 LINK NA NA A1103 O HOH A1570 1555 1555 2.43 CISPEP 1 VAL A 94 PRO A 95 0 5.03 CISPEP 2 PRO A 119 PRO A 120 0 2.87 CISPEP 3 PHE A 142 PRO A 143 0 6.11 CISPEP 4 GLU A 153 SER A 154 0 -2.42 CISPEP 5 SER A 367 HIS A 368 0 -14.72 CISPEP 6 GLY A 525 PRO A 526 0 2.08 CISPEP 7 TRP A 548 GLU A 549 0 -6.35 CISPEP 8 GLY A 883 PRO A 884 0 3.94 SITE 1 AC1 5 ASP A 207 PHE A 581 ASP A 584 HOH A1598 SITE 2 AC1 5 HOH A1681 SITE 1 AC2 6 ARG A 913 PRO A 914 LEU A 954 ASP A 955 SITE 2 AC2 6 ALA A 957 HOH A1753 SITE 1 AC3 6 GLU A 393 HIS A 395 GLU A 441 HOH A1269 SITE 2 AC3 6 HOH A1275 HOH A1570 SITE 1 AC4 7 PRO A 46 ALA A 47 ARG A 421 HOH A1219 SITE 2 AC4 7 HOH A1272 HOH A1358 HOH A1405 CRYST1 137.996 137.996 127.219 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007247 0.004184 0.000000 0.00000 SCALE2 0.000000 0.008368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007860 0.00000