HEADER HYDROLASE 29-JUN-20 6ZK5 TITLE PLANT NUCLEOSIDE HYDROLASE - ZMNRH3 ENZYME IN COMPLEX WITH FORODESINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE N-RIBOHYDROLASE 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PYRIMIDINE-SPECIFIC RIBONUCLEOSIDE HYDROLASE RIHB; COMPND 5 EC: 3.2.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 GENE: 100282231, NRH3, ZEAMMB73_ZM00001D005343; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLANT ENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MORERA,A.VIGOUROUX,D.KOPECNY REVDAT 3 31-JAN-24 6ZK5 1 REMARK REVDAT 2 13-DEC-23 6ZK5 1 JRNL HETSYN REVDAT 1 12-JAN-22 6ZK5 0 JRNL AUTH E.LUPTAKOVA,A.VIGOUROUX,R.KONCITIKOVA,M.KOPECNA,D.ZALABAK, JRNL AUTH 2 O.NOVAK,S.SALCEDO SARMIENTO,S.CAVAR ZELJKOVIC,D.J.KOPECNY, JRNL AUTH 3 K.VON SCHWARTZENBERG,M.STRNAD,L.SPICHAL,N.DE DIEGO, JRNL AUTH 4 D.KOPECNY,S.MORERA JRNL TITL PLANT NUCLEOSIDE N-RIBOHYDROLASES: RIBOSIDE BINDING AND ROLE JRNL TITL 2 IN NITROGEN STORAGE MOBILIZATION. JRNL REF PLANT J. 2023 JRNL REFN ESSN 1365-313X JRNL PMID 38044809 JRNL DOI 10.1111/TPJ.16572 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2128 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.03 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 851 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2566 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 808 REMARK 3 BIN R VALUE (WORKING SET) : 0.2543 REMARK 3 BIN FREE R VALUE : 0.2999 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.05 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 43 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4812 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.37980 REMARK 3 B22 (A**2) : -2.90430 REMARK 3 B33 (A**2) : 1.52450 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.220 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.162 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.129 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.157 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.128 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4985 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6794 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1651 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 852 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4985 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 670 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6221 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.43 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.04 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -17.6182 -2.5265 -0.3337 REMARK 3 T TENSOR REMARK 3 T11: -0.0560 T22: -0.0585 REMARK 3 T33: -0.0414 T12: 0.0145 REMARK 3 T13: -0.0031 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.7493 L22: 0.6074 REMARK 3 L33: 1.2216 L12: -0.0034 REMARK 3 L13: 0.1787 L23: -0.1584 REMARK 3 S TENSOR REMARK 3 S11: -0.0307 S12: 0.0118 S13: -0.0045 REMARK 3 S21: -0.0043 S22: 0.0141 S23: -0.0014 REMARK 3 S31: -0.0598 S32: -0.1586 S33: 0.0166 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 19.7594 3.1544 -18.0551 REMARK 3 T TENSOR REMARK 3 T11: -0.0729 T22: -0.0769 REMARK 3 T33: -0.0796 T12: -0.0083 REMARK 3 T13: 0.0067 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 2.2339 L22: 0.6410 REMARK 3 L33: 1.0587 L12: 0.4464 REMARK 3 L13: -0.8258 L23: -0.2715 REMARK 3 S TENSOR REMARK 3 S11: 0.1389 S12: -0.0665 S13: 0.1202 REMARK 3 S21: 0.0685 S22: -0.0744 S23: 0.0672 REMARK 3 S31: -0.0741 S32: 0.0488 S33: -0.0646 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZK5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42550 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 42.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.14900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KPO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.27000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.61000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.63500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.61000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.27000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.63500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 GLY A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 SER A -4 REMARK 465 GLN A -3 REMARK 465 ASP A -2 REMARK 465 PRO A -1 REMARK 465 MET B -14 REMARK 465 GLY B -13 REMARK 465 SER B -12 REMARK 465 SER B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 SER B -4 REMARK 465 GLN B -3 REMARK 465 ASP B -2 REMARK 465 PRO B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 8 62.71 -116.54 REMARK 500 ASP A 170 82.28 -150.53 REMARK 500 PRO A 286 -6.36 -58.67 REMARK 500 ASP B 8 61.00 -116.46 REMARK 500 ASP B 170 82.75 -151.79 REMARK 500 PRO B 286 -5.85 -58.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 ASP A 13 OD1 84.0 REMARK 620 3 ASP A 13 OD2 71.1 52.4 REMARK 620 4 LEU A 123 O 87.0 144.9 92.6 REMARK 620 5 ASP A 240 OD2 140.8 74.0 69.8 92.7 REMARK 620 6 IMH A 402 O3' 137.3 132.6 145.0 73.2 78.9 REMARK 620 7 IMH A 402 O2' 123.3 73.9 123.7 137.2 81.5 64.1 REMARK 620 8 HOH A 506 O 70.1 121.0 141.1 87.1 149.1 71.4 78.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 8 OD1 REMARK 620 2 ASP B 13 OD1 84.1 REMARK 620 3 ASP B 13 OD2 72.2 51.8 REMARK 620 4 LEU B 123 O 87.2 146.3 94.6 REMARK 620 5 ASP B 240 OD2 140.6 72.6 68.4 94.9 REMARK 620 6 IMH B 401 O3' 139.9 130.0 142.8 74.0 77.3 REMARK 620 7 IMH B 401 O2' 123.3 72.1 120.8 137.7 79.5 63.8 REMARK 620 8 HOH B 527 O 73.8 121.5 145.8 86.7 145.6 70.1 76.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMH A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMH B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 DBREF 6ZK5 A 2 315 UNP B6T563 B6T563_MAIZE 2 315 DBREF 6ZK5 B 2 315 UNP B6T563 B6T563_MAIZE 2 315 SEQADV 6ZK5 MET A -14 UNP B6T563 INITIATING METHIONINE SEQADV 6ZK5 GLY A -13 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 SER A -12 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 SER A -11 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 HIS A -10 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 HIS A -9 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 HIS A -8 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 HIS A -7 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 HIS A -6 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 HIS A -5 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 SER A -4 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 GLN A -3 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 ASP A -2 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 PRO A -1 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 ASN A 0 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 SER A 1 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 MET B -14 UNP B6T563 INITIATING METHIONINE SEQADV 6ZK5 GLY B -13 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 SER B -12 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 SER B -11 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 HIS B -10 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 HIS B -9 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 HIS B -8 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 HIS B -7 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 HIS B -6 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 HIS B -5 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 SER B -4 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 GLN B -3 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 ASP B -2 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 PRO B -1 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 ASN B 0 UNP B6T563 EXPRESSION TAG SEQADV 6ZK5 SER B 1 UNP B6T563 EXPRESSION TAG SEQRES 1 A 330 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 330 PRO ASN SER LYS ILE ILE ILE ASP THR ASP PRO GLY ILE SEQRES 3 A 330 ASP ASP SER VAL ALA ILE LEU MET ALA PHE GLN MET PRO SEQRES 4 A 330 GLY VAL GLN VAL LEU GLY LEU THR THR ILE PHE GLY ASN SEQRES 5 A 330 CYS THR THR GLU HIS ALA THR ARG ASN ALA LEU ILE LEU SEQRES 6 A 330 CYS GLU LYS ALA SER HIS LEU GLU VAL PRO VAL ALA GLU SEQRES 7 A 330 GLY SER HIS GLU PRO LEU LYS GLY GLY LYS PRO HIS VAL SEQRES 8 A 330 ALA ASP PHE VAL HIS GLY PRO ASP GLY LEU GLY ASN VAL SEQRES 9 A 330 ASP LEU PRO ASP PRO THR ILE LYS LYS VAL GLU GLU SER SEQRES 10 A 330 ALA THR ASP PHE LEU VAL ASP LYS VAL SER ARG PHE PRO SEQRES 11 A 330 GLY GLU VAL SER VAL LEU ALA LEU GLY PRO LEU THR ASN SEQRES 12 A 330 ILE ALA LEU ALA ILE LYS LYS ASP PRO SER PHE VAL LYS SEQRES 13 A 330 ASN VAL LYS LYS ILE VAL VAL LEU GLY GLY ALA PHE PHE SEQRES 14 A 330 ALA ALA GLY ASN ALA THR PRO SER ALA GLU ALA ASN ILE SEQRES 15 A 330 HIS SER ASP PRO GLU ALA ALA ASP MET VAL PHE THR SER SEQRES 16 A 330 GLY ALA ASP ILE TYR VAL VAL GLY LEU ASN ILE THR THR SEQRES 17 A 330 GLN VAL SER PHE THR ASP LYS ASP LEU LEU GLU LEU ARG SEQRES 18 A 330 ASN SER GLN GLY LYS TYR ALA GLN PHE LEU CYS ASP VAL SEQRES 19 A 330 CYS LYS PHE TYR LEU ASP TRP HIS THR GLU SER TYR GLY SEQRES 20 A 330 ALA PRO VAL ILE PHE LEU HIS ASP PRO VAL SER PHE ALA SEQRES 21 A 330 ALA LEU VAL ARG PRO GLU LEU PHE THR PHE LYS LYS GLY SEQRES 22 A 330 VAL VAL ARG VAL GLU THR GLN GLY ILE CYS VAL GLY HIS SEQRES 23 A 330 THR SER MET ASP MET LEU LEU LYS LYS TRP ASN SER GLU SEQRES 24 A 330 ASN PRO TRP THR GLY TYR SER PRO ILE SER VAL ALA TRP SEQRES 25 A 330 THR VAL ASP VAL PRO LYS VAL VAL ALA PHE VAL LYS GLU SEQRES 26 A 330 LEU VAL THR LYS PRO SEQRES 1 B 330 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 330 PRO ASN SER LYS ILE ILE ILE ASP THR ASP PRO GLY ILE SEQRES 3 B 330 ASP ASP SER VAL ALA ILE LEU MET ALA PHE GLN MET PRO SEQRES 4 B 330 GLY VAL GLN VAL LEU GLY LEU THR THR ILE PHE GLY ASN SEQRES 5 B 330 CYS THR THR GLU HIS ALA THR ARG ASN ALA LEU ILE LEU SEQRES 6 B 330 CYS GLU LYS ALA SER HIS LEU GLU VAL PRO VAL ALA GLU SEQRES 7 B 330 GLY SER HIS GLU PRO LEU LYS GLY GLY LYS PRO HIS VAL SEQRES 8 B 330 ALA ASP PHE VAL HIS GLY PRO ASP GLY LEU GLY ASN VAL SEQRES 9 B 330 ASP LEU PRO ASP PRO THR ILE LYS LYS VAL GLU GLU SER SEQRES 10 B 330 ALA THR ASP PHE LEU VAL ASP LYS VAL SER ARG PHE PRO SEQRES 11 B 330 GLY GLU VAL SER VAL LEU ALA LEU GLY PRO LEU THR ASN SEQRES 12 B 330 ILE ALA LEU ALA ILE LYS LYS ASP PRO SER PHE VAL LYS SEQRES 13 B 330 ASN VAL LYS LYS ILE VAL VAL LEU GLY GLY ALA PHE PHE SEQRES 14 B 330 ALA ALA GLY ASN ALA THR PRO SER ALA GLU ALA ASN ILE SEQRES 15 B 330 HIS SER ASP PRO GLU ALA ALA ASP MET VAL PHE THR SER SEQRES 16 B 330 GLY ALA ASP ILE TYR VAL VAL GLY LEU ASN ILE THR THR SEQRES 17 B 330 GLN VAL SER PHE THR ASP LYS ASP LEU LEU GLU LEU ARG SEQRES 18 B 330 ASN SER GLN GLY LYS TYR ALA GLN PHE LEU CYS ASP VAL SEQRES 19 B 330 CYS LYS PHE TYR LEU ASP TRP HIS THR GLU SER TYR GLY SEQRES 20 B 330 ALA PRO VAL ILE PHE LEU HIS ASP PRO VAL SER PHE ALA SEQRES 21 B 330 ALA LEU VAL ARG PRO GLU LEU PHE THR PHE LYS LYS GLY SEQRES 22 B 330 VAL VAL ARG VAL GLU THR GLN GLY ILE CYS VAL GLY HIS SEQRES 23 B 330 THR SER MET ASP MET LEU LEU LYS LYS TRP ASN SER GLU SEQRES 24 B 330 ASN PRO TRP THR GLY TYR SER PRO ILE SER VAL ALA TRP SEQRES 25 B 330 THR VAL ASP VAL PRO LYS VAL VAL ALA PHE VAL LYS GLU SEQRES 26 B 330 LEU VAL THR LYS PRO HET CA A 401 1 HET IMH A 402 19 HET EDO A 403 4 HET IMH B 401 19 HET CA B 402 1 HET PGE B 403 10 HET EDO B 404 4 HETNAM CA CALCIUM ION HETNAM IMH 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D- HETNAM 2 IMH RIBITOL HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN IMH FORODESINE; IMMUCILLIN H HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CA 2(CA 2+) FORMUL 4 IMH 2(C11 H14 N4 O4) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 8 PGE C6 H14 O4 FORMUL 10 HOH *302(H2 O) HELIX 1 AA1 GLY A 10 MET A 23 1 14 HELIX 2 AA2 THR A 39 ALA A 54 1 16 HELIX 3 AA3 ALA A 77 GLY A 82 1 6 HELIX 4 AA4 SER A 102 PHE A 114 1 13 HELIX 5 AA5 LEU A 126 ASP A 136 1 11 HELIX 6 AA6 SER A 138 VAL A 143 1 6 HELIX 7 AA7 GLU A 164 ASP A 170 1 7 HELIX 8 AA8 ASP A 170 THR A 179 1 10 HELIX 9 AA9 GLY A 188 THR A 193 1 6 HELIX 10 AB1 ASP A 199 ASN A 207 1 9 HELIX 11 AB2 TYR A 212 GLY A 232 1 21 HELIX 12 AB3 LEU A 238 ARG A 249 1 12 HELIX 13 AB4 ASP A 300 LYS A 314 1 15 HELIX 14 AB5 GLY B 10 MET B 23 1 14 HELIX 15 AB6 THR B 39 ALA B 54 1 16 HELIX 16 AB7 ALA B 77 GLY B 82 1 6 HELIX 17 AB8 SER B 102 PHE B 114 1 13 HELIX 18 AB9 LEU B 126 ASP B 136 1 11 HELIX 19 AC1 SER B 138 VAL B 143 1 6 HELIX 20 AC2 GLU B 164 ASP B 170 1 7 HELIX 21 AC3 ASP B 170 THR B 179 1 10 HELIX 22 AC4 GLY B 188 THR B 193 1 6 HELIX 23 AC5 ASP B 199 ASN B 207 1 9 HELIX 24 AC6 TYR B 212 GLY B 232 1 21 HELIX 25 AC7 LEU B 238 ARG B 249 1 12 HELIX 26 AC8 ASP B 300 LYS B 314 1 15 SHEET 1 AA1 9 VAL A 61 GLU A 63 0 SHEET 2 AA1 9 VAL A 26 THR A 33 1 N LEU A 31 O ALA A 62 SHEET 3 AA1 9 SER A 1 THR A 7 1 N SER A 1 O GLN A 27 SHEET 4 AA1 9 VAL A 118 ALA A 122 1 O LEU A 121 N ILE A 4 SHEET 5 AA1 9 LYS A 145 LEU A 149 1 O VAL A 147 N ALA A 122 SHEET 6 AA1 9 ILE A 184 VAL A 187 1 O VAL A 187 N VAL A 148 SHEET 7 AA1 9 ILE A 293 VAL A 299 1 O ALA A 296 N VAL A 186 SHEET 8 AA1 9 PHE A 253 VAL A 262 -1 N THR A 254 O TRP A 297 SHEET 9 AA1 9 THR A 272 ASP A 275 -1 O ASP A 275 N VAL A 259 SHEET 1 AA2 2 SER A 196 THR A 198 0 SHEET 2 AA2 2 VAL A 235 PHE A 237 -1 O ILE A 236 N PHE A 197 SHEET 1 AA3 8 VAL B 61 GLU B 63 0 SHEET 2 AA3 8 VAL B 26 THR B 33 1 N LEU B 31 O ALA B 62 SHEET 3 AA3 8 SER B 1 THR B 7 1 N SER B 1 O GLN B 27 SHEET 4 AA3 8 VAL B 118 ALA B 122 1 O LEU B 121 N ILE B 4 SHEET 5 AA3 8 LYS B 145 LEU B 149 1 O VAL B 147 N ALA B 122 SHEET 6 AA3 8 ILE B 184 VAL B 187 1 O VAL B 187 N VAL B 148 SHEET 7 AA3 8 ILE B 293 VAL B 299 1 O ALA B 296 N VAL B 186 SHEET 8 AA3 8 PHE B 253 GLY B 258 -1 N THR B 254 O TRP B 297 SHEET 1 AA4 2 SER B 196 THR B 198 0 SHEET 2 AA4 2 VAL B 235 PHE B 237 -1 O ILE B 236 N PHE B 197 SHEET 1 AA5 2 VAL B 260 VAL B 262 0 SHEET 2 AA5 2 THR B 272 MET B 274 -1 O SER B 273 N ARG B 261 LINK OD1 ASP A 8 CA CA A 401 1555 1555 2.51 LINK OD1 ASP A 13 CA CA A 401 1555 1555 2.44 LINK OD2 ASP A 13 CA CA A 401 1555 1555 2.56 LINK O LEU A 123 CA CA A 401 1555 1555 2.36 LINK OD2 ASP A 240 CA CA A 401 1555 1555 2.46 LINK CA CA A 401 O3' IMH A 402 1555 1555 2.41 LINK CA CA A 401 O2' IMH A 402 1555 1555 2.49 LINK CA CA A 401 O HOH A 506 1555 1555 2.65 LINK OD1 ASP B 8 CA CA B 402 1555 1555 2.43 LINK OD1 ASP B 13 CA CA B 402 1555 1555 2.48 LINK OD2 ASP B 13 CA CA B 402 1555 1555 2.56 LINK O LEU B 123 CA CA B 402 1555 1555 2.29 LINK OD2 ASP B 240 CA CA B 402 1555 1555 2.54 LINK O3' IMH B 401 CA CA B 402 1555 1555 2.43 LINK O2' IMH B 401 CA CA B 402 1555 1555 2.53 LINK CA CA B 402 O HOH B 527 1555 1555 2.49 CISPEP 1 PRO A 9 GLY A 10 0 -1.10 CISPEP 2 PRO B 9 GLY B 10 0 -1.14 SITE 1 AC1 7 ASP A 8 ASP A 13 ASN A 37 LEU A 123 SITE 2 AC1 7 ASP A 240 IMH A 402 HOH A 506 SITE 1 AC2 21 ASP A 12 ASP A 13 ASN A 37 HIS A 81 SITE 2 AC2 21 LEU A 123 LEU A 149 ASN A 158 GLU A 164 SITE 3 AC2 21 ALA A 165 ASN A 166 TYR A 223 TRP A 226 SITE 4 AC2 21 HIS A 239 ASP A 240 CA A 401 HOH A 506 SITE 5 AC2 21 HOH A 508 HOH A 521 HOH A 565 HOH A 570 SITE 6 AC2 21 LYS B 279 SITE 1 AC3 5 GLU A 251 LEU A 252 PHE A 253 THR A 298 SITE 2 AC3 5 ASP A 300 SITE 1 AC4 19 ASP B 12 ASP B 13 ASN B 37 HIS B 81 SITE 2 AC4 19 LEU B 123 LEU B 149 ASN B 158 GLU B 164 SITE 3 AC4 19 ALA B 165 ASN B 166 TYR B 223 TRP B 226 SITE 4 AC4 19 HIS B 239 ASP B 240 CA B 402 HOH B 527 SITE 5 AC4 19 HOH B 561 HOH B 587 HOH B 598 SITE 1 AC5 7 ASP B 8 ASP B 13 ASN B 37 LEU B 123 SITE 2 AC5 7 ASP B 240 IMH B 401 HOH B 527 SITE 1 AC6 8 LYS B 144 LYS B 145 VAL B 147 TYR B 185 SITE 2 AC6 8 ALA B 246 LEU B 247 PRO B 250 EDO B 404 SITE 1 AC7 6 SER B 1 LYS B 145 LEU B 247 VAL B 248 SITE 2 AC7 6 PGE B 403 HOH B 533 CRYST1 78.540 79.270 85.220 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012732 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011734 0.00000