HEADER SIGNALING PROTEIN 03-JUL-20 6ZMN TITLE CRYSTAL STRUCTURE OF THE SMAD3-SMAD5 MH1 DOMAIN CHIMERA BOUND TO THE TITLE 2 GGCGC SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HMAD-3,JV15-2,SMAD FAMILY MEMBER 3,HSMAD3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(P*TP*GP*CP*AP*GP*GP*CP*GP*CP*GP*CP*CP*TP*GP*CP*A)-3'); COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMAD3, MADH3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS SMAD3, TRANSCRIPTION, TGFBETA, DIMERIZATION, HINGE LOOP, PROTEIN KEYWDS 2 ENGINEERING, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.PLUTA,M.J.MACIAS REVDAT 4 31-JAN-24 6ZMN 1 JRNL REVDAT 3 10-FEB-21 6ZMN 1 JRNL REVDAT 2 21-OCT-20 6ZMN 1 REMARK REVDAT 1 26-AUG-20 6ZMN 0 JRNL AUTH L.RUIZ,Z.KACZMARSKA,T.GOMES,E.ARAGON,C.TORNER,R.FREIER, JRNL AUTH 2 B.BAGINSKI,P.MARTIN-MALPARTIDA,N.DE MARTIN GARRIDO, JRNL AUTH 3 J.A.MARQUEZ,T.N.CORDEIRO,R.PLUTA,M.J.MACIAS JRNL TITL UNVEILING THE DIMER/MONOMER PROPENSITIES OF SMAD MH1-DNA JRNL TITL 2 COMPLEXES. JRNL REF COMPUT STRUCT BIOTECHNOL J V. 19 632 2021 JRNL REFN ESSN 2001-0370 JRNL PMID 33510867 JRNL DOI 10.1016/J.CSBJ.2020.12.044 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (3-OCT-2019) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 66.1 REMARK 3 NUMBER OF REFLECTIONS : 12963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 650 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 8.19 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2238 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 16 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1978 REMARK 3 NUCLEIC ACID ATOMS : 656 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.86690 REMARK 3 B22 (A**2) : 4.64950 REMARK 3 B33 (A**2) : 7.21740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.370 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.649 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.304 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.602 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.304 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.900 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.853 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2773 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3865 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 909 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 365 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2773 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 343 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1646 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.91 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.92 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.38 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 14.2852 28.2644 -17.8534 REMARK 3 T TENSOR REMARK 3 T11: 0.1005 T22: 0.0416 REMARK 3 T33: -0.0033 T12: 0.0354 REMARK 3 T13: -0.0724 T23: 0.053 REMARK 3 L TENSOR REMARK 3 L11: 0.9345 L22: 0.2654 REMARK 3 L33: 2.1634 L12: -0.1833 REMARK 3 L13: -1.3061 L23: 0.236 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: 0.2835 S13: -0.1476 REMARK 3 S21: 0.2835 S22: -0.0007 S23: 0.0675 REMARK 3 S31: -0.1476 S32: 0.0675 S33: -0.0204 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 30.9142 22.5339 -45.1951 REMARK 3 T TENSOR REMARK 3 T11: -0.0069 T22: 0.0277 REMARK 3 T33: 0.2079 T12: -0.0218 REMARK 3 T13: 0.0134 T23: -0.0733 REMARK 3 L TENSOR REMARK 3 L11: 0.4097 L22: 0.6058 REMARK 3 L33: 3.5632 L12: 0.9208 REMARK 3 L13: -0.9682 L23: 0.2727 REMARK 3 S TENSOR REMARK 3 S11: -0.2724 S12: -0.1135 S13: -0.186 REMARK 3 S21: -0.1135 S22: 0.4537 S23: 0.2347 REMARK 3 S31: -0.186 S32: 0.2347 S33: -0.1813 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 18.2435 6.1166 -13.1325 REMARK 3 T TENSOR REMARK 3 T11: -0.4499 T22: -0.3596 REMARK 3 T33: -0.2332 T12: -0.1392 REMARK 3 T13: -0.1892 T23: 0.0717 REMARK 3 L TENSOR REMARK 3 L11: 2.0895 L22: 11.0596 REMARK 3 L33: 8.8895 L12: -1.7876 REMARK 3 L13: -5.2693 L23: -1.5432 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: -0.3518 S13: 0.1435 REMARK 3 S21: -0.3518 S22: -0.1142 S23: -0.0719 REMARK 3 S31: 0.1435 S32: -0.0719 S33: 0.1268 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 17.7954 8.5331 -13.7844 REMARK 3 T TENSOR REMARK 3 T11: -0.4084 T22: -0.2811 REMARK 3 T33: -0.1643 T12: -0.056 REMARK 3 T13: -0.1706 T23: -0.1387 REMARK 3 L TENSOR REMARK 3 L11: 6.2474 L22: 12.8462 REMARK 3 L33: 2.5774 L12: 0.9753 REMARK 3 L13: -7.0325 L23: -6.5536 REMARK 3 S TENSOR REMARK 3 S11: -0.0495 S12: -0.3528 S13: -0.4988 REMARK 3 S21: -0.3528 S22: 0.1509 S23: -0.1717 REMARK 3 S31: -0.4988 S32: -0.1717 S33: -0.1014 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZMN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292109620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12973 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 48.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5OD6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M SODIUM ACETATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.25100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.57700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.70800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.57700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.25100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.70800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 54.50200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 36.70800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -55.57700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 9 REMARK 465 PRO A 130 REMARK 465 VAL A 131 REMARK 465 LEU A 132 REMARK 465 PRO A 133 REMARK 465 GLU B 128 REMARK 465 THR B 129 REMARK 465 PRO B 130 REMARK 465 VAL B 131 REMARK 465 LEU B 132 REMARK 465 PRO B 133 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 90 -53.38 -131.00 REMARK 500 GLU A 128 63.72 -100.96 REMARK 500 ARG B 90 -53.67 -130.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 61 SG REMARK 620 2 CYS A 106 SG 111.9 REMARK 620 3 CYS A 118 SG 103.1 115.4 REMARK 620 4 HIS A 123 ND1 103.3 113.6 108.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 61 SG REMARK 620 2 CYS B 106 SG 115.7 REMARK 620 3 CYS B 118 SG 104.0 109.8 REMARK 620 4 HIS B 123 ND1 107.8 116.1 101.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6BTZ RELATED DB: PDB REMARK 900 RELATED ID: 6TCE RELATED DB: PDB REMARK 900 RELATED ID: 5OD6 RELATED DB: PDB REMARK 900 RELATED ID: 5ODG RELATED DB: PDB DBREF 6ZMN A 10 133 UNP P84022 SMAD3_HUMAN 10 136 DBREF 6ZMN B 10 133 UNP P84022 SMAD3_HUMAN 10 136 DBREF 6ZMN C 1 16 PDB 6ZMN 6ZMN 1 16 DBREF 6ZMN D 1 16 PDB 6ZMN 6ZMN 1 16 SEQADV 6ZMN GLY A 9 UNP P84022 EXPRESSION TAG SEQADV 6ZMN ALA A 11 UNP P84022 ILE 11 CONFLICT SEQADV 6ZMN GLN A 20 UNP P84022 LYS 20 CONFLICT SEQADV 6ZMN ASP A 22 UNP P84022 GLU 22 CONFLICT SEQADV 6ZMN GLU A 23 UNP P84022 GLN 23 CONFLICT SEQADV 6ZMN A UNP P84022 ASN 24 DELETION SEQADV 6ZMN A UNP P84022 GLY 25 DELETION SEQADV 6ZMN A UNP P84022 GLN 26 DELETION SEQADV 6ZMN GLY B 9 UNP P84022 EXPRESSION TAG SEQADV 6ZMN ALA B 11 UNP P84022 ILE 11 CONFLICT SEQADV 6ZMN GLN B 20 UNP P84022 LYS 20 CONFLICT SEQADV 6ZMN ASP B 22 UNP P84022 GLU 22 CONFLICT SEQADV 6ZMN GLU B 23 UNP P84022 GLN 23 CONFLICT SEQADV 6ZMN B UNP P84022 ASN 24 DELETION SEQADV 6ZMN B UNP P84022 GLY 25 DELETION SEQADV 6ZMN B UNP P84022 GLN 26 DELETION SEQRES 1 A 125 GLY PRO ALA VAL LYS ARG LEU LEU GLY TRP LYS GLN GLY SEQRES 2 A 125 ASP GLU GLU GLU LYS TRP CYS GLU LYS ALA VAL LYS SER SEQRES 3 A 125 LEU VAL LYS LYS LEU LYS LYS THR GLY GLN LEU ASP GLU SEQRES 4 A 125 LEU GLU LYS ALA ILE THR THR GLN ASN VAL ASN THR LYS SEQRES 5 A 125 CYS ILE THR ILE PRO ARG SER LEU ASP GLY ARG LEU GLN SEQRES 6 A 125 VAL SER HIS ARG LYS GLY LEU PRO HIS VAL ILE TYR CYS SEQRES 7 A 125 ARG LEU TRP ARG TRP PRO ASP LEU HIS SER HIS HIS GLU SEQRES 8 A 125 LEU ARG ALA MET GLU LEU CYS GLU PHE ALA PHE ASN MET SEQRES 9 A 125 LYS LYS ASP GLU VAL CYS VAL ASN PRO TYR HIS TYR GLN SEQRES 10 A 125 ARG VAL GLU THR PRO VAL LEU PRO SEQRES 1 B 125 GLY PRO ALA VAL LYS ARG LEU LEU GLY TRP LYS GLN GLY SEQRES 2 B 125 ASP GLU GLU GLU LYS TRP CYS GLU LYS ALA VAL LYS SER SEQRES 3 B 125 LEU VAL LYS LYS LEU LYS LYS THR GLY GLN LEU ASP GLU SEQRES 4 B 125 LEU GLU LYS ALA ILE THR THR GLN ASN VAL ASN THR LYS SEQRES 5 B 125 CYS ILE THR ILE PRO ARG SER LEU ASP GLY ARG LEU GLN SEQRES 6 B 125 VAL SER HIS ARG LYS GLY LEU PRO HIS VAL ILE TYR CYS SEQRES 7 B 125 ARG LEU TRP ARG TRP PRO ASP LEU HIS SER HIS HIS GLU SEQRES 8 B 125 LEU ARG ALA MET GLU LEU CYS GLU PHE ALA PHE ASN MET SEQRES 9 B 125 LYS LYS ASP GLU VAL CYS VAL ASN PRO TYR HIS TYR GLN SEQRES 10 B 125 ARG VAL GLU THR PRO VAL LEU PRO SEQRES 1 C 16 DT DG DC DA DG DG DC DG DC DG DC DC DT SEQRES 2 C 16 DG DC DA SEQRES 1 D 16 DT DG DC DA DG DG DC DG DC DG DC DC DT SEQRES 2 D 16 DG DC DA HET ACT A 201 4 HET EDO A 202 4 HET ZN A 203 1 HET PGE B 201 10 HET ZN B 202 1 HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETNAM PGE TRIETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 EDO C2 H6 O2 FORMUL 7 ZN 2(ZN 2+) FORMUL 8 PGE C6 H14 O4 FORMUL 10 HOH *16(H2 O) HELIX 1 AA1 PRO A 10 TRP A 18 1 9 HELIX 2 AA2 ASP A 22 THR A 42 1 21 HELIX 3 AA3 GLN A 44 GLN A 55 1 12 HELIX 4 AA4 LEU A 80 ARG A 90 1 11 HELIX 5 AA5 SER A 96 HIS A 98 5 3 HELIX 6 AA6 ALA A 109 LYS A 113 5 5 HELIX 7 AA7 ASN A 120 TYR A 122 5 3 HELIX 8 AA8 PRO B 10 TRP B 18 1 9 HELIX 9 AA9 ASP B 22 THR B 42 1 21 HELIX 10 AB1 GLN B 44 GLN B 55 1 12 HELIX 11 AB2 LEU B 80 ARG B 90 1 11 HELIX 12 AB3 SER B 96 HIS B 98 5 3 HELIX 13 AB4 ALA B 109 LYS B 113 5 5 HELIX 14 AB5 ASN B 120 TYR B 122 5 3 SHEET 1 AA1 2 THR A 63 PRO A 65 0 SHEET 2 AA1 2 GLU A 116 CYS A 118 -1 O VAL A 117 N ILE A 64 SHEET 1 AA2 2 LEU A 72 VAL A 74 0 SHEET 2 AA2 2 ARG A 77 GLY A 79 -1 O GLY A 79 N LEU A 72 SHEET 1 AA3 2 LEU A 100 ALA A 102 0 SHEET 2 AA3 2 TYR A 124 ARG A 126 -1 O GLN A 125 N ARG A 101 SHEET 1 AA4 2 THR B 63 PRO B 65 0 SHEET 2 AA4 2 GLU B 116 CYS B 118 -1 O VAL B 117 N ILE B 64 SHEET 1 AA5 2 LEU B 72 VAL B 74 0 SHEET 2 AA5 2 ARG B 77 GLY B 79 -1 O GLY B 79 N LEU B 72 SHEET 1 AA6 2 LEU B 100 ALA B 102 0 SHEET 2 AA6 2 TYR B 124 ARG B 126 -1 O GLN B 125 N ARG B 101 LINK SG CYS A 61 ZN ZN A 203 1555 1555 2.39 LINK SG CYS A 106 ZN ZN A 203 1555 1555 2.39 LINK SG CYS A 118 ZN ZN A 203 1555 1555 2.18 LINK ND1 HIS A 123 ZN ZN A 203 1555 1555 2.08 LINK SG CYS B 61 ZN ZN B 202 1555 1555 2.34 LINK SG CYS B 106 ZN ZN B 202 1555 1555 2.35 LINK SG CYS B 118 ZN ZN B 202 1555 1555 2.33 LINK ND1 HIS B 123 ZN ZN B 202 1555 1555 2.05 SITE 1 AC1 4 GLN A 44 CYS A 61 THR A 63 EDO A 202 SITE 1 AC2 6 GLY A 43 GLN A 44 GLU A 47 LYS A 60 SITE 2 AC2 6 CYS A 61 ACT A 201 SITE 1 AC3 4 CYS A 61 CYS A 106 CYS A 118 HIS A 123 SITE 1 AC4 3 GLY B 17 TRP B 18 GLN B 20 SITE 1 AC5 4 CYS B 61 CYS B 106 CYS B 118 HIS B 123 CRYST1 54.502 73.416 111.154 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018348 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013621 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008997 0.00000