HEADER HYDROLASE 04-JUL-20 6ZMV TITLE STRUCTURE OF MURAMIDASE FROM TRICHOBOLUS ZUKALII COMPND MOL_ID: 1; COMPND 2 MOLECULE: MURAMIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOBOLUS ZUKALII; SOURCE 3 ORGANISM_TAXID: 2081540; SOURCE 4 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS MURAMIDASE, FUNGAL, GH25, LYSOZYME, INDUSTRIAL APPLICATION, KEYWDS 2 PEPTIDOGLYCAN CLEAVAGE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.MOROZ,E.BLAGOVA,E.TAYLOR,J.P.TURKENBURG,L.K.SKOV,G.P.GIPPERT, AUTHOR 2 K.M.SCHNORR,L.MING,L.YE,M.KLAUSEN,M.T.COHN,E.G.W.SCHMIDT,S.NYMAND- AUTHOR 3 GRARUP,G.J.DAVIES,K.S.WILSON REVDAT 4 06-NOV-24 6ZMV 1 REMARK REVDAT 3 31-JAN-24 6ZMV 1 REMARK REVDAT 2 26-JAN-22 6ZMV 1 JRNL REMARK REVDAT 1 14-JUL-21 6ZMV 0 JRNL AUTH O.V.MOROZ,E.BLAGOVA,E.TAYLOR,J.P.TURKENBURG,L.K.SKOV, JRNL AUTH 2 G.P.GIPPERT,K.M.SCHNORR,L.MING,L.YE,M.KLAUSEN,M.T.COHN, JRNL AUTH 3 E.G.W.SCHMIDT,S.NYMAND-GRARUP,G.J.DAVIES,K.S.WILSON JRNL TITL FUNGAL GH25 MURAMIDASES: NEW FAMILY MEMBERS WITH JRNL TITL 2 APPLICATIONS IN ANIMAL NUTRITION AND A CRYSTAL STRUCTURE AT JRNL TITL 3 0.78 ANGSTROM RESOLUTION. JRNL REF PLOS ONE V. 16 48190 2021 JRNL REFN ESSN 1932-6203 JRNL PMID 33711051 JRNL DOI 10.1371/JOURNAL.PONE.0248190 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 73721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.104 REMARK 3 FREE R VALUE : 0.143 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.098 REMARK 3 FREE R VALUE TEST SET COUNT : 3758 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4087 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.1060 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.1730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3167 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 637 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09800 REMARK 3 B22 (A**2) : 0.39100 REMARK 3 B33 (A**2) : -0.20600 REMARK 3 B12 (A**2) : 0.09700 REMARK 3 B13 (A**2) : -0.07500 REMARK 3 B23 (A**2) : -0.21700 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.053 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.465 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3518 ; 0.016 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2940 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4810 ; 1.909 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6829 ; 1.744 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 6.899 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;29.957 ;21.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 470 ;10.961 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;11.325 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4151 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 845 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 810 ; 0.245 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 84 ; 0.240 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1736 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 441 ; 0.298 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1772 ; 1.387 ; 0.631 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1771 ; 1.387 ; 0.629 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2247 ; 1.727 ; 0.954 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2248 ; 1.727 ; 0.956 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1746 ; 2.236 ; 0.832 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1739 ; 2.187 ; 0.830 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2562 ; 2.717 ; 1.176 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2551 ; 2.637 ; 1.170 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6458 ; 2.609 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : Chains A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 NULL NULL NULL NULL NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6ZMV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292109774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5-5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73721 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 27.187 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2X8R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULPHATE, AMMONIUM SULPHATE, REMARK 280 SODIUM CITRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 183 CD CE NZ REMARK 470 LYS A 205 CD CE NZ REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 LYS B 183 CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR A 35 OG1 CG2 REMARK 480 LYS A 78 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER B 117 HZ3 LYS B 149 1.16 REMARK 500 HG SER A 117 HZ3 LYS A 149 1.22 REMARK 500 O HOH A 589 O HOH A 632 1.44 REMARK 500 O HOH A 701 O HOH A 708 1.55 REMARK 500 HO1 GOL A 304 O HOH A 405 1.57 REMARK 500 O HOH A 553 O HOH A 639 1.58 REMARK 500 O HOH B 721 O HOH B 723 1.61 REMARK 500 O HOH A 451 O HOH A 495 1.63 REMARK 500 O HOH B 520 O HOH B 635 1.69 REMARK 500 O HOH A 571 O HOH A 632 1.78 REMARK 500 O HOH B 432 O HOH B 573 1.83 REMARK 500 O HOH B 552 O HOH B 660 1.86 REMARK 500 O HOH A 633 O HOH A 652 1.86 REMARK 500 O HOH A 638 O HOH A 708 1.92 REMARK 500 O HOH B 509 O HOH B 683 1.94 REMARK 500 O HOH B 505 O HOH B 599 1.96 REMARK 500 O HOH A 683 O HOH A 705 1.99 REMARK 500 O2 SO4 A 305 O HOH A 402 2.01 REMARK 500 O HOH A 427 O HOH A 546 2.02 REMARK 500 O HOH B 449 O HOH B 555 2.02 REMARK 500 O HOH B 692 O HOH B 721 2.03 REMARK 500 O HOH A 521 O HOH A 566 2.03 REMARK 500 O HOH B 430 O HOH B 596 2.03 REMARK 500 O HOH B 404 O HOH B 603 2.04 REMARK 500 O HOH A 410 O HOH A 632 2.05 REMARK 500 O HOH B 500 O HOH B 590 2.05 REMARK 500 O HOH B 434 O HOH B 474 2.06 REMARK 500 O HOH B 609 O HOH B 689 2.07 REMARK 500 O HOH B 550 O HOH B 614 2.10 REMARK 500 OD2 ASP B 118 O HOH B 401 2.11 REMARK 500 O HOH A 509 O HOH A 652 2.11 REMARK 500 O HOH B 588 O HOH B 631 2.11 REMARK 500 O HOH A 560 O HOH A 610 2.13 REMARK 500 O HOH B 615 O HOH B 670 2.13 REMARK 500 O HOH B 647 O HOH B 662 2.14 REMARK 500 O HOH A 402 O HOH A 409 2.15 REMARK 500 O HOH B 425 O HOH B 606 2.16 REMARK 500 O HOH A 433 O HOH A 641 2.16 REMARK 500 O HOH A 420 O HOH A 553 2.16 REMARK 500 O HOH A 437 O HOH A 642 2.17 REMARK 500 OD1 ASN B 21 O HOH B 402 2.17 REMARK 500 O HOH A 521 O HOH A 644 2.17 REMARK 500 O HOH A 621 O HOH A 692 2.18 REMARK 500 OH TYR A 98 O HOH A 403 2.18 REMARK 500 O HOH B 618 O HOH B 644 2.18 REMARK 500 OG SER A 102 O HOH A 404 2.18 REMARK 500 O HOH A 450 O HOH A 497 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 655 O HOH B 610 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 78 CD LYS A 78 CE -0.219 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 LYS A 78 CG - CD - CE ANGL. DEV. = 27.3 DEGREES REMARK 500 TYR B 46 CB - CG - CD2 ANGL. DEV. = 3.6 DEGREES REMARK 500 TYR B 46 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 85 40.71 -84.34 REMARK 500 LYS A 183 51.80 -143.25 REMARK 500 ALA B 85 39.37 -82.34 REMARK 500 LYS B 183 51.11 -142.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 711 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 712 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A 713 DISTANCE = 7.95 ANGSTROMS REMARK 525 HOH B 724 DISTANCE = 6.90 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 306 DBREF 6ZMV A 1 207 PDB 6ZMV 6ZMV 1 207 DBREF 6ZMV B 1 207 PDB 6ZMV 6ZMV 1 207 SEQRES 1 A 207 ALA VAL PRO GLY PHE ASP ILE SER HIS TYR GLN PRO SER SEQRES 2 A 207 VAL ASN TYR ALA GLY ALA TYR ASN SER GLY ALA ARG PHE SEQRES 3 A 207 VAL ILE ILE LYS ALA THR GLU GLY THR THR TYR THR ASP SEQRES 4 A 207 PRO VAL PHE SER THR HIS TYR THR GLY ALA THR LYS ALA SEQRES 5 A 207 GLY LEU ILE ARG GLY GLY TYR HIS PHE ALA ARG PRO ALA SEQRES 6 A 207 SER SER SER GLY SER ALA GLN ALA ASP PHE PHE PHE LYS SEQRES 7 A 207 ASN GLY GLY GLY TRP SER ALA ASP GLY ILE THR LEU PRO SEQRES 8 A 207 GLY MET LEU ASP MET GLU TYR GLY SER THR SER SER CYS SEQRES 9 A 207 HIS GLY LEU SER GLN THR ALA MET VAL ASN TRP ILE SER SEQRES 10 A 207 ASP PHE VAL ASN ARG TYR LYS THR LEU SER GLY ARG TYR SEQRES 11 A 207 PRO MET ILE TYR THR GLY TYR TYR TRP TRP VAL GLU CYS SEQRES 12 A 207 THR GLY ASN SER ASN LYS PHE ALA THR THR CYS PRO LEU SEQRES 13 A 207 VAL LEU ALA ARG TYR SER SER SER VAL GLY GLU ILE PRO SEQRES 14 A 207 GLY GLY TRP GLY TYR GLN THR ILE TRP GLN PHE ASN ASP SEQRES 15 A 207 LYS TYR ALA TYR GLY GLY ASP SER ASP SER PHE ASN GLY SEQRES 16 A 207 SER LEU ASP ARG LEU LYS ALA LEU ALA LYS GLY THR SEQRES 1 B 207 ALA VAL PRO GLY PHE ASP ILE SER HIS TYR GLN PRO SER SEQRES 2 B 207 VAL ASN TYR ALA GLY ALA TYR ASN SER GLY ALA ARG PHE SEQRES 3 B 207 VAL ILE ILE LYS ALA THR GLU GLY THR THR TYR THR ASP SEQRES 4 B 207 PRO VAL PHE SER THR HIS TYR THR GLY ALA THR LYS ALA SEQRES 5 B 207 GLY LEU ILE ARG GLY GLY TYR HIS PHE ALA ARG PRO ALA SEQRES 6 B 207 SER SER SER GLY SER ALA GLN ALA ASP PHE PHE PHE LYS SEQRES 7 B 207 ASN GLY GLY GLY TRP SER ALA ASP GLY ILE THR LEU PRO SEQRES 8 B 207 GLY MET LEU ASP MET GLU TYR GLY SER THR SER SER CYS SEQRES 9 B 207 HIS GLY LEU SER GLN THR ALA MET VAL ASN TRP ILE SER SEQRES 10 B 207 ASP PHE VAL ASN ARG TYR LYS THR LEU SER GLY ARG TYR SEQRES 11 B 207 PRO MET ILE TYR THR GLY TYR TYR TRP TRP VAL GLU CYS SEQRES 12 B 207 THR GLY ASN SER ASN LYS PHE ALA THR THR CYS PRO LEU SEQRES 13 B 207 VAL LEU ALA ARG TYR SER SER SER VAL GLY GLU ILE PRO SEQRES 14 B 207 GLY GLY TRP GLY TYR GLN THR ILE TRP GLN PHE ASN ASP SEQRES 15 B 207 LYS TYR ALA TYR GLY GLY ASP SER ASP SER PHE ASN GLY SEQRES 16 B 207 SER LEU ASP ARG LEU LYS ALA LEU ALA LYS GLY THR HET GOL A 301 14 HET GOL A 302 14 HET GOL A 303 14 HET GOL A 304 14 HET SO4 A 305 5 HET GOL B 301 14 HET GOL B 302 14 HET GOL B 303 28 HET GOL B 304 14 HET SO4 B 305 5 HET SO4 B 306 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 8(C3 H8 O3) FORMUL 7 SO4 3(O4 S 2-) FORMUL 14 HOH *637(H2 O) HELIX 1 AA1 ASN A 15 SER A 22 1 8 HELIX 2 AA2 VAL A 41 ALA A 52 1 12 HELIX 3 AA3 SER A 68 ASN A 79 1 12 HELIX 4 AA4 SER A 108 GLY A 128 1 21 HELIX 5 AA5 TYR A 137 GLY A 145 1 9 HELIX 6 AA6 SER A 196 GLY A 206 1 11 HELIX 7 AA7 ASN B 15 SER B 22 1 8 HELIX 8 AA8 VAL B 41 GLY B 53 1 13 HELIX 9 AA9 SER B 68 ASN B 79 1 12 HELIX 10 AB1 SER B 108 GLY B 128 1 21 HELIX 11 AB2 TYR B 137 GLY B 145 1 9 HELIX 12 AB3 SER B 196 GLY B 206 1 11 SHEET 1 AA110 TYR A 37 THR A 38 0 SHEET 2 AA110 PHE A 26 GLU A 33 -1 N GLU A 33 O TYR A 37 SHEET 3 AA110 ILE A 55 PHE A 61 1 O TYR A 59 N ALA A 31 SHEET 4 AA110 MET A 93 ASP A 95 1 O ASP A 95 N HIS A 60 SHEET 5 AA110 MET A 132 GLY A 136 1 O MET A 132 N LEU A 94 SHEET 6 AA110 LEU A 156 ALA A 159 1 O VAL A 157 N ILE A 133 SHEET 7 AA110 ILE A 177 ASN A 181 1 O ILE A 177 N LEU A 158 SHEET 8 AA110 ASP A 189 PHE A 193 -1 O SER A 192 N TRP A 178 SHEET 9 AA110 VAL A 2 ILE A 7 -1 N VAL A 2 O PHE A 193 SHEET 10 AA110 PHE A 26 GLU A 33 1 O LYS A 30 N ILE A 7 SHEET 1 AA210 TYR B 37 THR B 38 0 SHEET 2 AA210 PHE B 26 GLU B 33 -1 N GLU B 33 O TYR B 37 SHEET 3 AA210 ILE B 55 PHE B 61 1 O TYR B 59 N ALA B 31 SHEET 4 AA210 MET B 93 ASP B 95 1 O ASP B 95 N HIS B 60 SHEET 5 AA210 MET B 132 GLY B 136 1 O MET B 132 N LEU B 94 SHEET 6 AA210 LEU B 156 ALA B 159 1 O VAL B 157 N ILE B 133 SHEET 7 AA210 ILE B 177 ASN B 181 1 O GLN B 179 N LEU B 158 SHEET 8 AA210 ASP B 189 PHE B 193 -1 O SER B 192 N TRP B 178 SHEET 9 AA210 VAL B 2 ILE B 7 -1 N VAL B 2 O PHE B 193 SHEET 10 AA210 PHE B 26 GLU B 33 1 O LYS B 30 N ILE B 7 SSBOND 1 CYS A 104 CYS A 143 1555 1555 2.01 SSBOND 2 CYS B 104 CYS B 143 1555 1555 2.00 SITE 1 AC1 7 ASP A 6 ILE A 7 SER A 8 GLN A 11 SITE 2 AC1 7 TYR A 59 ASP A 189 HOH A 462 SITE 1 AC2 9 ASP A 6 TYR A 59 MET A 93 ASP A 95 SITE 2 AC2 9 GLU A 97 TYR A 134 GLN A 179 ASP A 189 SITE 3 AC2 9 HOH A 424 SITE 1 AC3 7 MET A 96 TYR A 98 TYR A 134 THR A 135 SITE 2 AC3 7 GLY A 136 TRP A 139 HOH A 428 SITE 1 AC4 8 TYR A 46 ARG A 56 SER A 84 ASP A 86 SITE 2 AC4 8 THR A 89 GLN A 109 HOH A 405 HOH A 547 SITE 1 AC5 7 LYS A 124 ARG A 129 TYR A 130 HOH A 402 SITE 2 AC5 7 HOH A 409 HOH A 435 HOH A 437 SITE 1 AC6 8 ASP B 6 ILE B 7 SER B 8 GLN B 11 SITE 2 AC6 8 TYR B 59 ASP B 189 HOH B 491 HOH B 594 SITE 1 AC7 13 ASP B 6 TYR B 59 MET B 93 ASP B 95 SITE 2 AC7 13 GLU B 97 TYR B 134 GLN B 179 ASP B 189 SITE 3 AC7 13 HOH B 408 HOH B 426 HOH B 445 HOH B 488 SITE 4 AC7 13 HOH B 611 SITE 1 AC8 10 MET B 96 GLU B 97 TYR B 98 TYR B 134 SITE 2 AC8 10 THR B 135 GLY B 136 TRP B 139 HOH B 422 SITE 3 AC8 10 HOH B 468 HOH B 577 SITE 1 AC9 6 TYR B 46 ARG B 56 SER B 84 ASP B 86 SITE 2 AC9 6 THR B 89 HOH B 484 SITE 1 AD1 7 LYS B 124 ARG B 129 TYR B 130 HOH B 404 SITE 2 AD1 7 HOH B 420 HOH B 471 HOH B 502 SITE 1 AD2 7 ARG B 63 PRO B 64 ALA B 65 SER B 66 SITE 2 AD2 7 HIS B 105 HOH B 415 HOH B 610 CRYST1 39.398 48.582 55.737 97.08 99.53 98.15 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025382 0.003635 0.004863 0.00000 SCALE2 0.000000 0.020794 0.003160 0.00000 SCALE3 0.000000 0.000000 0.018401 0.00000