HEADER PROTEIN BINDING 08-JUL-20 6ZP3 TITLE THIOREDOXIN GLUTATHIONE REDUCTASE FROM SCHISTOSOMA MANSONI IN COMPLEX TITLE 2 WITH 2-METHYLINDOLE-3-ACETIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN GLUTATHIONE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA MANSONI; SOURCE 3 ORGANISM_TAXID: 6183; SOURCE 4 GENE: SMP_048430; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FRAGMENT BINDING, REDOX ENZYME, INHIBITOR, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR F.FATA,I.SILVESTRI,D.L.WILLIAMS,F.ANGELUCCI REVDAT 3 31-JAN-24 6ZP3 1 REMARK REVDAT 2 21-JUL-21 6ZP3 1 JRNL REVDAT 1 19-MAY-21 6ZP3 0 JRNL AUTH F.FATA,I.SILVESTRI,M.ARDINI,R.IPPOLITI,L.DI LEANDRO, JRNL AUTH 2 N.DEMITRI,M.POLENTARUTTI,A.DI MATTEO,H.LYU,G.R.J.THATCHER, JRNL AUTH 3 P.A.PETUKHOV,D.L.WILLIAMS,F.ANGELUCCI JRNL TITL PROBING THE SURFACE OF A PARASITE DRUG TARGET THIOREDOXIN JRNL TITL 2 GLUTATHIONE REDUCTASE USING SMALL MOLECULE FRAGMENTS. JRNL REF ACS INFECT DIS. V. 7 1932 2021 JRNL REFN ESSN 2373-8227 JRNL PMID 33950676 JRNL DOI 10.1021/ACSINFECDIS.0C00909 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 70291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 3637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6840 - 5.3284 0.99 2623 160 0.1992 0.2224 REMARK 3 2 5.3284 - 4.2308 1.00 2596 157 0.1588 0.1717 REMARK 3 3 4.2308 - 3.6965 1.00 2611 127 0.1527 0.1810 REMARK 3 4 3.6965 - 3.3587 1.00 2614 151 0.1613 0.1915 REMARK 3 5 3.3587 - 3.1181 1.00 2605 127 0.1798 0.1992 REMARK 3 6 3.1181 - 2.9343 1.00 2586 150 0.1822 0.2338 REMARK 3 7 2.9343 - 2.7874 1.00 2577 154 0.1778 0.2418 REMARK 3 8 2.7874 - 2.6661 1.00 2587 148 0.1776 0.1980 REMARK 3 9 2.6661 - 2.5634 0.98 2524 162 0.1743 0.2128 REMARK 3 10 2.5634 - 2.4750 0.92 2408 138 0.1784 0.2244 REMARK 3 11 2.4750 - 2.3976 0.95 2453 128 0.1709 0.2035 REMARK 3 12 2.3976 - 2.3291 0.97 2511 123 0.1642 0.2156 REMARK 3 13 2.3291 - 2.2678 0.97 2508 143 0.1613 0.1867 REMARK 3 14 2.2678 - 2.2125 0.98 2502 155 0.1566 0.1896 REMARK 3 15 2.2125 - 2.1622 0.98 2545 112 0.1612 0.2008 REMARK 3 16 2.1622 - 2.1162 0.99 2615 118 0.1627 0.1861 REMARK 3 17 2.1162 - 2.0738 0.99 2549 127 0.1615 0.2258 REMARK 3 18 2.0738 - 2.0347 1.00 2561 156 0.1667 0.1982 REMARK 3 19 2.0347 - 1.9984 1.00 2617 131 0.1621 0.2023 REMARK 3 20 1.9984 - 1.9645 1.00 2557 131 0.1661 0.2275 REMARK 3 21 1.9645 - 1.9328 1.00 2582 150 0.1704 0.1794 REMARK 3 22 1.9328 - 1.9031 1.00 2574 144 0.1822 0.2455 REMARK 3 23 1.9031 - 1.8751 1.00 2603 136 0.1890 0.2425 REMARK 3 24 1.8751 - 1.8487 1.00 2566 131 0.1996 0.2599 REMARK 3 25 1.8487 - 1.8237 1.00 2582 132 0.2165 0.2522 REMARK 3 26 1.8237 - 1.8000 1.00 2598 146 0.2285 0.2819 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5139 22.6242 0.7888 REMARK 3 T TENSOR REMARK 3 T11: 0.2527 T22: 0.2118 REMARK 3 T33: 0.2642 T12: -0.0822 REMARK 3 T13: 0.0596 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 0.8243 L22: 0.7549 REMARK 3 L33: 0.4569 L12: -0.0500 REMARK 3 L13: 0.0950 L23: 0.1903 REMARK 3 S TENSOR REMARK 3 S11: -0.1024 S12: 0.1332 S13: 0.1572 REMARK 3 S21: -0.3757 S22: 0.1289 S23: -0.2762 REMARK 3 S31: -0.0910 S32: 0.0712 S33: 0.0022 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3612 -11.0465 4.7579 REMARK 3 T TENSOR REMARK 3 T11: 0.1845 T22: 0.1600 REMARK 3 T33: 0.1898 T12: -0.0036 REMARK 3 T13: -0.0062 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.1432 L22: 0.1424 REMARK 3 L33: 0.3003 L12: -0.0076 REMARK 3 L13: 0.2080 L23: 0.2061 REMARK 3 S TENSOR REMARK 3 S11: -0.0137 S12: -0.0962 S13: -0.1584 REMARK 3 S21: -0.0783 S22: 0.0307 S23: -0.0475 REMARK 3 S31: -0.0589 S32: -0.0182 S33: -0.0004 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 415 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4932 -2.3362 24.3638 REMARK 3 T TENSOR REMARK 3 T11: 0.1505 T22: 0.1821 REMARK 3 T33: 0.1383 T12: 0.0171 REMARK 3 T13: -0.0119 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.0141 L22: 0.5553 REMARK 3 L33: 0.4747 L12: 0.0448 REMARK 3 L13: -0.1855 L23: -0.2741 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: -0.1779 S13: -0.0469 REMARK 3 S21: 0.0639 S22: 0.0316 S23: -0.0685 REMARK 3 S31: -0.0254 S32: 0.0439 S33: -0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 416 THROUGH 593 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4284 14.1376 9.7611 REMARK 3 T TENSOR REMARK 3 T11: 0.1591 T22: 0.1255 REMARK 3 T33: 0.1428 T12: 0.0190 REMARK 3 T13: -0.0032 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.4600 L22: 0.1490 REMARK 3 L33: 0.3865 L12: 0.0437 REMARK 3 L13: 0.1644 L23: 0.0175 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: -0.0837 S13: 0.0572 REMARK 3 S21: -0.0079 S22: 0.0279 S23: 0.0204 REMARK 3 S31: -0.0904 S32: -0.0720 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292109870. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70295 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 39.684 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.46700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2V6O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350 20%, POTASSIUM IODIDE 0.2, REMARK 280 BISTRIS 0.1M, DTT 5MM, PH 7.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.92450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.09300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.92450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 51.09300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 SER A 594 REMARK 465 GLY A 595 REMARK 465 CYS A 596 REMARK 465 SEC A 597 REMARK 465 GLY A 598 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 566 O HOH A 703 1.53 REMARK 500 OD1 ASP A 311 HZ3 LYS A 342 1.59 REMARK 500 OG1 THR A 418 OD1 ASP A 420 1.68 REMARK 500 OE2 GLU A 199 O HOH A 701 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 972 O HOH A 972 2556 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 157 30.84 -140.73 REMARK 500 ALA A 256 47.81 -140.41 REMARK 500 ALA A 294 21.92 -144.90 REMARK 500 SER A 318 -71.06 -129.55 REMARK 500 PHE A 474 52.20 -91.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 606 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 447 OE1 REMARK 620 2 ASP A 565 O 152.1 REMARK 620 3 THR A 567 O 158.5 6.4 REMARK 620 4 THR A 579 O 152.3 8.5 9.0 REMARK 620 5 HOH A 886 O 161.1 11.4 5.9 8.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 602 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 931 O REMARK 620 2 HOH A1045 O 88.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QN5 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTT A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 609 DBREF 6ZP3 A 1 598 UNP G4V8J4 G4V8J4_SCHMA 1 598 SEQRES 1 A 598 MET PRO PRO ALA ASP GLY THR SER GLN TRP LEU ARG LYS SEQRES 2 A 598 THR VAL ASP SER ALA ALA VAL ILE LEU PHE SER LYS THR SEQRES 3 A 598 THR CYS PRO TYR CYS LYS LYS VAL LYS ASP VAL LEU ALA SEQRES 4 A 598 GLU ALA LYS ILE LYS HIS ALA THR ILE GLU LEU ASP GLN SEQRES 5 A 598 LEU SER ASN GLY SER ALA ILE GLN LYS CYS LEU ALA SER SEQRES 6 A 598 PHE SER LYS ILE GLU THR VAL PRO GLN MET PHE VAL ARG SEQRES 7 A 598 GLY LYS PHE ILE GLY ASP SER GLN THR VAL LEU LYS TYR SEQRES 8 A 598 TYR SER ASN ASP GLU LEU ALA GLY ILE VAL ASN GLU SER SEQRES 9 A 598 LYS TYR ASP TYR ASP LEU ILE VAL ILE GLY GLY GLY SER SEQRES 10 A 598 GLY GLY LEU ALA ALA GLY LYS GLU ALA ALA LYS TYR GLY SEQRES 11 A 598 ALA LYS THR ALA VAL LEU ASP TYR VAL GLU PRO THR PRO SEQRES 12 A 598 ILE GLY THR THR TRP GLY LEU GLY GLY THR CYS VAL ASN SEQRES 13 A 598 VAL GLY CYS ILE PRO LYS LYS LEU MET HIS GLN ALA GLY SEQRES 14 A 598 LEU LEU SER HIS ALA LEU GLU ASP ALA GLU HIS PHE GLY SEQRES 15 A 598 TRP SER LEU ASP ARG SER LYS ILE SER HIS ASN TRP SER SEQRES 16 A 598 THR MET VAL GLU GLY VAL GLN SER HIS ILE GLY SER LEU SEQRES 17 A 598 ASN TRP GLY TYR LYS VAL ALA LEU ARG ASP ASN GLN VAL SEQRES 18 A 598 THR TYR LEU ASN ALA LYS GLY ARG LEU ILE SER PRO HIS SEQRES 19 A 598 GLU VAL GLN ILE THR ASP LYS ASN GLN LYS VAL SER THR SEQRES 20 A 598 ILE THR GLY ASN LYS ILE ILE LEU ALA THR GLY GLU ARG SEQRES 21 A 598 PRO LYS TYR PRO GLU ILE PRO GLY ALA VAL GLU TYR GLY SEQRES 22 A 598 ILE THR SER ASP ASP LEU PHE SER LEU PRO TYR PHE PRO SEQRES 23 A 598 GLY LYS THR LEU VAL ILE GLY ALA SER TYR VAL ALA LEU SEQRES 24 A 598 GLU CYS ALA GLY PHE LEU ALA SER LEU GLY GLY ASP VAL SEQRES 25 A 598 THR VAL MET VAL ARG SER ILE LEU LEU ARG GLY PHE ASP SEQRES 26 A 598 GLN GLN MET ALA GLU LYS VAL GLY ASP TYR MET GLU ASN SEQRES 27 A 598 HIS GLY VAL LYS PHE ALA LYS LEU CYS VAL PRO ASP GLU SEQRES 28 A 598 ILE LYS GLN LEU LYS VAL VAL ASP THR GLU ASN ASN LYS SEQRES 29 A 598 PRO GLY LEU LEU LEU VAL LYS GLY HIS TYR THR ASP GLY SEQRES 30 A 598 LYS LYS PHE GLU GLU GLU PHE GLU THR VAL ILE PHE ALA SEQRES 31 A 598 VAL GLY ARG GLU PRO GLN LEU SER LYS VAL LEU CYS GLU SEQRES 32 A 598 THR VAL GLY VAL LYS LEU ASP LYS ASN GLY ARG VAL VAL SEQRES 33 A 598 CYS THR ASP ASP GLU GLN THR THR VAL SER ASN VAL TYR SEQRES 34 A 598 ALA ILE GLY ASP ILE ASN ALA GLY LYS PRO GLN LEU THR SEQRES 35 A 598 PRO VAL ALA ILE GLN ALA GLY ARG TYR LEU ALA ARG ARG SEQRES 36 A 598 LEU PHE ALA GLY ALA THR GLU LEU THR ASP TYR SER ASN SEQRES 37 A 598 VAL ALA THR THR VAL PHE THR PRO LEU GLU TYR GLY ALA SEQRES 38 A 598 CYS GLY LEU SER GLU GLU ASP ALA ILE GLU LYS TYR GLY SEQRES 39 A 598 ASP LYS ASP ILE GLU VAL TYR HIS SER ASN PHE LYS PRO SEQRES 40 A 598 LEU GLU TRP THR VAL ALA HIS ARG GLU ASP ASN VAL CYS SEQRES 41 A 598 TYR MET LYS LEU VAL CYS ARG LYS SER ASP ASN MET ARG SEQRES 42 A 598 VAL LEU GLY LEU HIS VAL LEU GLY PRO ASN ALA GLY GLU SEQRES 43 A 598 ILE THR GLN GLY TYR ALA VAL ALA ILE LYS MET GLY ALA SEQRES 44 A 598 THR LYS ALA ASP PHE ASP ARG THR ILE GLY ILE HIS PRO SEQRES 45 A 598 THR CYS SER GLU THR PHE THR THR LEU HIS VAL THR LYS SEQRES 46 A 598 LYS SER GLY VAL SER PRO ILE VAL SER GLY CYS SEC GLY HET FAD A 601 84 HET K A 602 1 HET PG4 A 603 31 HET DMS A 604 10 HET QN5 A 605 24 HET CA A 606 1 HET PEG A 607 17 HET DTT A 608 18 HET PGE A 609 24 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM K POTASSIUM ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM DMS DIMETHYL SULFOXIDE HETNAM QN5 2-(2-METHYL-1~{H}-INDOL-3-YL)ETHANOIC ACID HETNAM CA CALCIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM PGE TRIETHYLENE GLYCOL HETSYN QN5 2-METHYLINDOLE-3-ACETIC ACID HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 K K 1+ FORMUL 4 PG4 C8 H18 O5 FORMUL 5 DMS C2 H6 O S FORMUL 6 QN5 C11 H11 N O2 FORMUL 7 CA CA 2+ FORMUL 8 PEG C4 H10 O3 FORMUL 9 DTT C4 H10 O2 S2 FORMUL 10 PGE C6 H14 O4 FORMUL 11 HOH *346(H2 O) HELIX 1 AA1 GLY A 6 ALA A 18 1 13 HELIX 2 AA2 CYS A 28 ALA A 41 1 14 HELIX 3 AA3 ASP A 51 LEU A 53 5 3 HELIX 4 AA4 ASN A 55 LEU A 63 1 9 HELIX 5 AA5 LEU A 63 LYS A 68 1 6 HELIX 6 AA6 ASP A 84 ASN A 94 1 11 HELIX 7 AA7 GLU A 96 ASN A 102 1 7 HELIX 8 AA8 GLY A 116 TYR A 129 1 14 HELIX 9 AA9 GLY A 151 GLY A 158 1 8 HELIX 10 AB1 GLY A 158 PHE A 181 1 24 HELIX 11 AB2 ASP A 186 ILE A 190 5 5 HELIX 12 AB3 ASN A 193 ASN A 219 1 27 HELIX 13 AB4 GLY A 268 GLY A 273 1 6 HELIX 14 AB5 SER A 276 PHE A 280 1 5 HELIX 15 AB6 SER A 295 LEU A 308 1 14 HELIX 16 AB7 ASP A 325 HIS A 339 1 15 HELIX 17 AB8 SER A 398 GLY A 406 1 9 HELIX 18 AB9 GLY A 432 ASN A 435 5 4 HELIX 19 AC1 LEU A 441 ALA A 458 1 18 HELIX 20 AC2 SER A 485 GLY A 494 1 10 HELIX 21 AC3 LEU A 508 ALA A 513 1 6 HELIX 22 AC4 ASN A 543 MET A 557 1 15 HELIX 23 AC5 THR A 560 THR A 567 1 8 HELIX 24 AC6 CYS A 574 THR A 580 5 7 SHEET 1 AA1 4 ALA A 46 GLU A 49 0 SHEET 2 AA1 4 VAL A 20 SER A 24 1 N SER A 24 O ILE A 48 SHEET 3 AA1 4 GLN A 74 VAL A 77 -1 O GLN A 74 N PHE A 23 SHEET 4 AA1 4 LYS A 80 GLY A 83 -1 O ILE A 82 N MET A 75 SHEET 1 AA2 6 THR A 222 LEU A 224 0 SHEET 2 AA2 6 THR A 133 LEU A 136 1 N VAL A 135 O THR A 222 SHEET 3 AA2 6 TYR A 108 ILE A 113 1 N VAL A 112 O LEU A 136 SHEET 4 AA2 6 VAL A 245 LEU A 255 1 O ILE A 254 N ILE A 113 SHEET 5 AA2 6 GLU A 235 THR A 239 -1 N VAL A 236 O ILE A 248 SHEET 6 AA2 6 LYS A 227 SER A 232 -1 N ARG A 229 O GLN A 237 SHEET 1 AA3 5 THR A 222 LEU A 224 0 SHEET 2 AA3 5 THR A 133 LEU A 136 1 N VAL A 135 O THR A 222 SHEET 3 AA3 5 TYR A 108 ILE A 113 1 N VAL A 112 O LEU A 136 SHEET 4 AA3 5 VAL A 245 LEU A 255 1 O ILE A 254 N ILE A 113 SHEET 5 AA3 5 VAL A 428 ALA A 430 1 O TYR A 429 N LEU A 255 SHEET 1 AA4 2 GLU A 259 PRO A 261 0 SHEET 2 AA4 2 ARG A 393 PRO A 395 -1 O GLU A 394 N ARG A 260 SHEET 1 AA5 5 ILE A 274 THR A 275 0 SHEET 2 AA5 5 THR A 386 PHE A 389 1 O PHE A 389 N ILE A 274 SHEET 3 AA5 5 THR A 289 ILE A 292 1 N ILE A 292 O ILE A 388 SHEET 4 AA5 5 VAL A 312 VAL A 316 1 O THR A 313 N VAL A 291 SHEET 5 AA5 5 LYS A 342 LYS A 345 1 O ALA A 344 N VAL A 314 SHEET 1 AA6 3 CYS A 347 LYS A 356 0 SHEET 2 AA6 3 LEU A 367 TYR A 374 -1 O LEU A 367 N LEU A 355 SHEET 3 AA6 3 LYS A 379 PHE A 384 -1 O PHE A 384 N LEU A 368 SHEET 1 AA7 5 THR A 471 VAL A 473 0 SHEET 2 AA7 5 TYR A 479 GLY A 483 -1 O TYR A 479 N VAL A 473 SHEET 3 AA7 5 ARG A 533 LEU A 540 -1 O VAL A 539 N GLY A 480 SHEET 4 AA7 5 CYS A 520 ARG A 527 -1 N TYR A 521 O LEU A 540 SHEET 5 AA7 5 ILE A 498 PHE A 505 -1 N GLU A 499 O CYS A 526 SSBOND 1 CYS A 28 CYS A 31 1555 1555 2.06 SSBOND 2 CYS A 154 CYS A 159 1555 1555 2.53 LINK OE1 GLN A 447 CA CA A 606 1555 2555 2.71 LINK O ASP A 565 CA CA A 606 1555 1555 2.63 LINK O THR A 567 CA CA A 606 1555 1555 2.64 LINK O THR A 579 CA CA A 606 1555 1555 2.64 LINK K K A 602 O HOH A 931 1555 1555 3.44 LINK K K A 602 O HOH A1045 1555 1555 3.34 LINK CA CA A 606 O HOH A 886 1555 1555 2.77 CISPEP 1 VAL A 72 PRO A 73 0 2.49 CISPEP 2 HIS A 571 PRO A 572 0 -3.07 SITE 1 AC1 36 ILE A 113 GLY A 114 GLY A 116 SER A 117 SITE 2 AC1 36 GLY A 118 ASP A 137 TYR A 138 GLY A 152 SITE 3 AC1 36 THR A 153 CYS A 154 VAL A 157 GLY A 158 SITE 4 AC1 36 CYS A 159 LYS A 162 ALA A 226 GLY A 228 SITE 5 AC1 36 ALA A 256 THR A 257 GLY A 258 TYR A 296 SITE 6 AC1 36 VAL A 297 ARG A 393 GLY A 432 ASP A 433 SITE 7 AC1 36 GLN A 440 LEU A 441 THR A 442 PRO A 443 SITE 8 AC1 36 HIS A 571 PRO A 572 HOH A 759 HOH A 786 SITE 9 AC1 36 HOH A 795 HOH A 826 HOH A 832 HOH A 849 SITE 1 AC2 4 ASP A 488 GLU A 491 LYS A 492 HOH A 934 SITE 1 AC3 7 GLN A 447 TYR A 451 ARG A 454 ASP A 565 SITE 2 AC3 7 THR A 579 LEU A 581 CA A 606 SITE 1 AC4 5 ARG A 317 SER A 318 ARG A 322 HOH A 842 SITE 2 AC4 5 HOH A 884 SITE 1 AC5 6 GLN A 447 ASP A 565 THR A 567 THR A 579 SITE 2 AC5 6 DMS A 604 HOH A 886 SITE 1 AC6 4 GLU A 330 GLY A 333 ASP A 334 LYS A 345 SITE 1 AC7 7 ARG A 229 LEU A 230 SER A 398 LEU A 401 SITE 2 AC7 7 CYS A 402 HOH A 935 HOH A1009 SITE 1 AC8 8 GLN A 327 LYS A 331 HIS A 502 ASN A 504 SITE 2 AC8 8 TYR A 521 LYS A 585 PRO A 591 HOH A 954 CRYST1 141.849 102.186 58.572 90.00 112.94 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007050 0.000000 0.002983 0.00000 SCALE2 0.000000 0.009786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018539 0.00000