HEADER VIRAL PROTEIN 08-JUL-20 6ZPA TITLE CYANOPHAGE S-2L HD PHOSPHOHYDROLASE (DATZ) BOUND TO DA AND ONE TITLE 2 CATALYTIC ZN2+ ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DATZ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYANOPHAGE S-2L; SOURCE 3 ORGANISM_TAXID: 260586; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS S-2L, HD PHOSPHOHYDROLASE, DATZ, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.CZERNECKI,P.LEGRAND,M.DELARUE REVDAT 3 15-MAY-24 6ZPA 1 REMARK REVDAT 2 05-MAY-21 6ZPA 1 JRNL REVDAT 1 03-MAR-21 6ZPA 0 JRNL AUTH D.CZERNECKI,P.LEGRAND,M.TEKPINAR,S.ROSARIO,P.A.KAMINSKI, JRNL AUTH 2 M.DELARUE JRNL TITL HOW CYANOPHAGE S-2L REJECTS ADENINE AND INCORPORATES JRNL TITL 2 2-AMINOADENINE TO SATURATE HYDROGEN BONDING IN ITS DNA. JRNL REF NAT COMMUN V. 12 2420 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33893297 JRNL DOI 10.1038/S41467-021-22626-X REMARK 2 REMARK 2 RESOLUTION. 0.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.336 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 172344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.135 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.986 REMARK 3 FREE R VALUE TEST SET COUNT : 8593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8444 - 2.6720 1.00 5605 320 0.1428 0.1584 REMARK 3 2 2.6720 - 2.1209 1.00 5467 335 0.1111 0.1193 REMARK 3 3 2.1209 - 1.8528 1.00 5512 275 0.1062 0.1079 REMARK 3 4 1.8528 - 1.6834 1.00 5472 303 0.1112 0.1122 REMARK 3 5 1.6834 - 1.5627 1.00 5512 275 0.1074 0.1275 REMARK 3 6 1.5627 - 1.4706 1.00 5416 331 0.1089 0.1093 REMARK 3 7 1.4706 - 1.3969 1.00 5460 288 0.1160 0.1286 REMARK 3 8 1.3969 - 1.3361 1.00 5485 257 0.1198 0.1202 REMARK 3 9 1.3361 - 1.2847 1.00 5477 278 0.1170 0.1146 REMARK 3 10 1.2847 - 1.2403 1.00 5471 271 0.1186 0.1216 REMARK 3 11 1.2403 - 1.2015 1.00 5471 283 0.1210 0.0972 REMARK 3 12 1.2015 - 1.1672 1.00 5434 270 0.1171 0.1065 REMARK 3 13 1.1672 - 1.1365 1.00 5463 312 0.1148 0.1289 REMARK 3 14 1.1365 - 1.1087 1.00 5453 294 0.1190 0.1257 REMARK 3 15 1.1087 - 1.0835 1.00 5408 288 0.1264 0.1284 REMARK 3 16 1.0835 - 1.0605 1.00 5449 302 0.1313 0.1345 REMARK 3 17 1.0605 - 1.0393 1.00 5455 262 0.1352 0.1391 REMARK 3 18 1.0393 - 1.0196 1.00 5459 266 0.1353 0.1348 REMARK 3 19 1.0196 - 1.0014 1.00 5456 289 0.1462 0.1536 REMARK 3 20 1.0014 - 0.9845 1.00 5432 287 0.1524 0.1636 REMARK 3 21 0.9845 - 0.9686 1.00 5402 284 0.1585 0.1581 REMARK 3 22 0.9686 - 0.9537 1.00 5459 309 0.1681 0.1640 REMARK 3 23 0.9537 - 0.9396 1.00 5411 266 0.1780 0.2052 REMARK 3 24 0.9396 - 0.9264 1.00 5492 275 0.1818 0.1911 REMARK 3 25 0.9264 - 0.9139 1.00 5450 274 0.1986 0.1894 REMARK 3 26 0.9139 - 0.9020 1.00 5453 272 0.2178 0.2096 REMARK 3 27 0.9020 - 0.8907 1.00 5404 283 0.2237 0.2190 REMARK 3 28 0.8907 - 0.8800 1.00 5428 281 0.2348 0.2295 REMARK 3 29 0.8800 - 0.8698 1.00 5468 273 0.2533 0.2469 REMARK 3 30 0.8698 - 0.8600 1.00 5427 290 0.2625 0.2951 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.078 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1517 REMARK 3 ANGLE : 0.945 2079 REMARK 3 CHIRALITY : 0.065 237 REMARK 3 PLANARITY : 0.010 279 REMARK 3 DIHEDRAL : 17.430 585 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZPA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292108909. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.729309 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 172371 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.860 REMARK 200 RESOLUTION RANGE LOW (A) : 49.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 61.20 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 51.80 REMARK 200 R MERGE FOR SHELL (I) : 4.74900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M LISO4; 100 MM HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 70.74450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.84436 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 17.86700 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 70.74450 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 40.84436 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 17.86700 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 70.74450 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 40.84436 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 17.86700 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 70.74450 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 40.84436 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 17.86700 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 70.74450 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 40.84436 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 17.86700 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 70.74450 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 40.84436 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 17.86700 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 81.68871 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 35.73400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 81.68871 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 35.73400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 81.68871 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 35.73400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 81.68871 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 35.73400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 81.68871 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 35.73400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 81.68871 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 35.73400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -332.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 347 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 418 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 461 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 466 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 467 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 482 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 512 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 513 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 THR A -4 REMARK 465 GLY A -3 REMARK 465 ASP A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 308 O HOH A 470 1.61 REMARK 500 O HOH A 339 O HOH A 346 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 13 1.44 -68.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 LI A 203 LI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 20 O REMARK 620 2 VAL A 23 O 105.6 REMARK 620 3 HOH A 334 O 114.1 114.8 REMARK 620 4 HOH A 336 O 113.7 103.1 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 34 NE2 REMARK 620 2 HIS A 66 NE2 103.7 REMARK 620 3 ASP A 67 OD2 87.6 82.5 REMARK 620 4 ASP A 119 OD1 87.4 88.3 168.2 REMARK 620 N 1 2 3 DBREF 6ZPA A -5 175 PDB 6ZPA 6ZPA -5 175 SEQRES 1 A 181 GLY THR GLY ASP GLY SER MET THR LEU GLN ILE THR GLU SEQRES 2 A 181 THR TYR GLU ARG LEU ARG ALA SER HIS ILE SER ARG TRP SEQRES 3 A 181 GLY ILE VAL GLN THR THR TYR PRO GLN ASN ILE ALA GLU SEQRES 4 A 181 HIS MET TRP ARG VAL TRP LEU LEU CYS ARG ASP TRP GLY SEQRES 5 A 181 ALA ALA ALA GLY MET PRO GLN HIS THR VAL ARG GLN ALA SEQRES 6 A 181 CYS GLU PHE ALA LEU VAL HIS ASP LEU ALA GLU ILE ARG SEQRES 7 A 181 THR GLY ASP ALA PRO THR PRO HIS LYS THR PRO GLU LEU SEQRES 8 A 181 LYS GLU LEU LEU ALA GLY ILE GLU ALA GLN ILE VAL PRO SEQRES 9 A 181 GLU VAL ALA GLU LEU GLU ALA THR MET ALA PRO GLU ALA SEQRES 10 A 181 ARG GLU LEU TRP LYS PHE CYS ASP THR ALA GLU ALA VAL SEQRES 11 A 181 LEU PHE LEU LYS VAL ASN GLY LEU GLY ALA HIS ALA TYR SEQRES 12 A 181 ASP VAL GLN HIS LEU LEU MET GLU GLN MET LYS ARG ARG SEQRES 13 A 181 LEU MET ASP SER VAL LEU ASP VAL GLU VAL GLN ASP GLU SEQRES 14 A 181 LEU MET PHE GLN PHE GLU ARG THR ILE LYS LYS THR HET 3D1 A 201 31 HET ZN A 202 1 HET LI A 203 1 HETNAM 3D1 (2R,3S,5R)-5-(6-AMINO-9H-PURIN-9-YL)-TETRAHYDRO-2- HETNAM 2 3D1 (HYDROXYMETHYL)FURAN-3-OL HETNAM ZN ZINC ION HETNAM LI LITHIUM ION HETSYN 3D1 2'-DEOXYADENOSINE FORMUL 2 3D1 C10 H13 N5 O3 FORMUL 3 ZN ZN 2+ FORMUL 4 LI LI 1+ FORMUL 5 HOH *218(H2 O) HELIX 1 AA1 GLU A 7 LEU A 12 1 6 HELIX 2 AA2 ARG A 13 ILE A 17 5 5 HELIX 3 AA3 ASN A 30 ALA A 49 1 20 HELIX 4 AA4 PRO A 52 LEU A 64 1 13 HELIX 5 AA5 ALA A 69 GLY A 74 1 6 HELIX 6 AA6 PRO A 77 LYS A 81 5 5 HELIX 7 AA7 THR A 82 VAL A 97 1 16 HELIX 8 AA8 VAL A 97 MET A 107 1 11 HELIX 9 AA9 ALA A 108 GLY A 131 1 24 HELIX 10 AB1 LEU A 132 ASP A 153 1 22 HELIX 11 AB2 ASP A 157 LYS A 174 1 18 LINK O TRP A 20 LI LI A 203 1555 1555 1.89 LINK O VAL A 23 LI LI A 203 1555 1555 1.90 LINK NE2 HIS A 34 ZN ZN A 202 1555 1555 2.17 LINK NE2 HIS A 66 ZN ZN A 202 1555 1555 2.16 LINK OD2 ASP A 67 ZN ZN A 202 1555 1555 2.28 LINK OD1 ASP A 119 ZN ZN A 202 1555 1555 2.12 LINK LI LI A 203 O HOH A 334 1555 1555 1.94 LINK LI LI A 203 O HOH A 336 1555 6555 1.96 CRYST1 141.489 141.489 53.601 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007068 0.004081 0.000000 0.00000 SCALE2 0.000000 0.008161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018656 0.00000