HEADER VIRAL PROTEIN 08-JUL-20 6ZPB TITLE CYANOPHAGE S-2L HD PHOSPHOHYDROLASE (DATZ) BOUND TO DA AND TWO TITLE 2 CATALYTIC CO2+ IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DATZ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYANOPHAGE S-2L; SOURCE 3 ORGANISM_TAXID: 260586; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS S-2L, HD PHOSPHOHYDROLASE, DATZ, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.CZERNECKI,P.LEGRAND,M.DELARUE REVDAT 3 15-MAY-24 6ZPB 1 REMARK REVDAT 2 05-MAY-21 6ZPB 1 JRNL REVDAT 1 03-MAR-21 6ZPB 0 JRNL AUTH D.CZERNECKI,P.LEGRAND,M.TEKPINAR,S.ROSARIO,P.A.KAMINSKI, JRNL AUTH 2 M.DELARUE JRNL TITL HOW CYANOPHAGE S-2L REJECTS ADENINE AND INCORPORATES JRNL TITL 2 2-AMINOADENINE TO SATURATE HYDROGEN BONDING IN ITS DNA. JRNL REF NAT COMMUN V. 12 2420 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33893297 JRNL DOI 10.1038/S41467-021-22626-X REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.450 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 21599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.875 REMARK 3 FREE R VALUE TEST SET COUNT : 1053 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4359 - 3.4413 1.00 2687 141 0.1433 0.1394 REMARK 3 2 3.4413 - 2.7317 1.00 2630 138 0.1418 0.1850 REMARK 3 3 2.7317 - 2.3864 1.00 2600 137 0.1426 0.1498 REMARK 3 4 2.3864 - 2.1682 1.00 2589 136 0.1425 0.1595 REMARK 3 5 2.1682 - 2.0128 1.00 2610 130 0.1371 0.1748 REMARK 3 6 2.0128 - 1.8942 1.00 2582 125 0.1519 0.2176 REMARK 3 7 1.8942 - 1.7993 0.97 2536 130 0.1621 0.2301 REMARK 3 8 1.7993 - 1.7210 0.89 2312 116 0.1861 0.2497 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.166 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1510 REMARK 3 ANGLE : 1.282 2065 REMARK 3 CHIRALITY : 0.101 234 REMARK 3 PLANARITY : 0.009 278 REMARK 3 DIHEDRAL : 18.167 582 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZPB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292109056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033202 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21613 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 40.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.30700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M LISO4; 100 MM HEPES; 10 MM REMARK 280 COCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 70.91350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.94193 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 17.90833 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 70.91350 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 40.94193 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 17.90833 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 70.91350 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 40.94193 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 17.90833 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 70.91350 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 40.94193 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 17.90833 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 70.91350 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 40.94193 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 17.90833 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 70.91350 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 40.94193 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 17.90833 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 81.88386 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 35.81667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 81.88386 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 35.81667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 81.88386 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 35.81667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 81.88386 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 35.81667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 81.88386 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 35.81667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 81.88386 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 35.81667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -234.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 382 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 445 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 491 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 497 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 508 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 511 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 523 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 555 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 THR A -4 REMARK 465 GLY A -3 REMARK 465 ASP A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 506 O HOH A 506 4554 0.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 13 4.99 -69.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 560 DISTANCE = 5.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 202 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 34 NE2 REMARK 620 2 HIS A 66 NE2 102.0 REMARK 620 3 ASP A 67 OD2 89.5 83.0 REMARK 620 4 ASP A 119 OD1 88.5 92.4 174.5 REMARK 620 5 HOH A 322 O 168.8 88.6 95.6 87.3 REMARK 620 6 HOH A 447 O 87.5 170.3 99.0 86.0 81.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 203 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 70 OE2 REMARK 620 2 ASP A 75 OD1 91.4 REMARK 620 3 3D1 A 201 O5' 169.6 97.1 REMARK 620 4 HOH A 303 O 86.4 93.3 99.0 REMARK 620 5 HOH A 316 O 92.8 85.7 82.0 178.6 REMARK 620 6 HOH A 321 O 93.4 174.8 78.3 85.2 96.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 204 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 163 OE1 REMARK 620 2 HOH A 319 O 64.0 REMARK 620 3 HOH A 433 O 134.2 109.6 REMARK 620 N 1 2 DBREF 6ZPB A -5 175 PDB 6ZPB 6ZPB -5 175 SEQRES 1 A 181 GLY THR GLY ASP GLY SER MET THR LEU GLN ILE THR GLU SEQRES 2 A 181 THR TYR GLU ARG LEU ARG ALA SER HIS ILE SER ARG TRP SEQRES 3 A 181 GLY ILE VAL GLN THR THR TYR PRO GLN ASN ILE ALA GLU SEQRES 4 A 181 HIS MET TRP ARG VAL TRP LEU LEU CYS ARG ASP TRP GLY SEQRES 5 A 181 ALA ALA ALA GLY MET PRO GLN HIS THR VAL ARG GLN ALA SEQRES 6 A 181 CYS GLU PHE ALA LEU VAL HIS ASP LEU ALA GLU ILE ARG SEQRES 7 A 181 THR GLY ASP ALA PRO THR PRO HIS LYS THR PRO GLU LEU SEQRES 8 A 181 LYS GLU LEU LEU ALA GLY ILE GLU ALA GLN ILE VAL PRO SEQRES 9 A 181 GLU VAL ALA GLU LEU GLU ALA THR MET ALA PRO GLU ALA SEQRES 10 A 181 ARG GLU LEU TRP LYS PHE CYS ASP THR ALA GLU ALA VAL SEQRES 11 A 181 LEU PHE LEU LYS VAL ASN GLY LEU GLY ALA HIS ALA TYR SEQRES 12 A 181 ASP VAL GLN HIS LEU LEU MET GLU GLN MET LYS ARG ARG SEQRES 13 A 181 LEU MET ASP SER VAL LEU ASP VAL GLU VAL GLN ASP GLU SEQRES 14 A 181 LEU MET PHE GLN PHE GLU ARG THR ILE LYS LYS THR HET 3D1 A 201 18 HET CO A 202 1 HET CO A 203 1 HET CO A 204 1 HETNAM 3D1 (2R,3S,5R)-5-(6-AMINO-9H-PURIN-9-YL)-TETRAHYDRO-2- HETNAM 2 3D1 (HYDROXYMETHYL)FURAN-3-OL HETNAM CO COBALT (II) ION HETSYN 3D1 2'-DEOXYADENOSINE FORMUL 2 3D1 C10 H13 N5 O3 FORMUL 3 CO 3(CO 2+) FORMUL 6 HOH *260(H2 O) HELIX 1 AA1 GLU A 7 LEU A 12 1 6 HELIX 2 AA2 ARG A 13 ILE A 17 5 5 HELIX 3 AA3 ASN A 30 ALA A 49 1 20 HELIX 4 AA4 PRO A 52 LEU A 64 1 13 HELIX 5 AA5 ALA A 69 GLY A 74 1 6 HELIX 6 AA6 PRO A 77 LYS A 81 5 5 HELIX 7 AA7 THR A 82 VAL A 97 1 16 HELIX 8 AA8 VAL A 97 MET A 107 1 11 HELIX 9 AA9 ALA A 108 GLY A 131 1 24 HELIX 10 AB1 GLY A 133 ASP A 153 1 21 HELIX 11 AB2 ASP A 157 LYS A 174 1 18 LINK NE2 HIS A 34 CO CO A 202 1555 1555 2.12 LINK NE2 HIS A 66 CO CO A 202 1555 1555 2.12 LINK OD2 ASP A 67 CO CO A 202 1555 1555 2.14 LINK OE2 GLU A 70 CO CO A 203 1555 1555 2.10 LINK OD1 ASP A 75 CO CO A 203 1555 1555 2.02 LINK OD1 ASP A 119 CO CO A 202 1555 1555 2.16 LINK OE1 GLU A 163 CO CO A 204 1555 1555 2.33 LINK O5' 3D1 A 201 CO CO A 203 1555 1555 2.17 LINK CO CO A 202 O HOH A 322 1555 1555 2.19 LINK CO CO A 202 O HOH A 447 1555 1555 2.29 LINK CO CO A 203 O HOH A 303 1555 1555 2.13 LINK CO CO A 203 O HOH A 316 1555 1555 2.16 LINK CO CO A 203 O HOH A 321 1555 1555 2.03 LINK CO CO A 204 O HOH A 319 1555 1555 2.64 LINK CO CO A 204 O HOH A 433 1555 4554 2.62 CRYST1 141.827 141.827 53.725 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007051 0.004071 0.000000 0.00000 SCALE2 0.000000 0.008142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018613 0.00000