HEADER PEPTIDE BINDING PROTEIN 10-JUL-20 6ZQP TITLE STRUCTURE OF THE PMT2-MIR DOMAIN WITH BOUND LIGANDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PMT2 ISOFORM 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: PMT2, GI526_G0000041; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CARBOHYDRATE-BINDING MODULE, MIR DOMAIN, PROTEIN-O-MANNOSYLATION, KEYWDS 2 BETA-TREFOIL, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.WILD,A.CHIAPPARINO,Y.HACKMANN,S.MORTENSEN,I.SINNING REVDAT 3 31-JAN-24 6ZQP 1 REMARK REVDAT 2 13-JAN-21 6ZQP 1 JRNL REVDAT 1 23-DEC-20 6ZQP 0 JRNL AUTH A.CHIAPPARINO,A.GRBAVAC,H.R.JONKER,Y.HACKMANN,S.MORTENSEN, JRNL AUTH 2 E.ZATORSKA,A.SCHOTT,G.STIER,K.SAXENA,K.WILD,H.SCHWALBE, JRNL AUTH 3 S.STRAHL,I.SINNING JRNL TITL FUNCTIONAL IMPLICATIONS OF MIR DOMAINS IN PROTEIN O JRNL TITL 2 -MANNOSYLATION. JRNL REF ELIFE V. 9 2020 JRNL REFN ESSN 2050-084X JRNL PMID 33357379 JRNL DOI 10.7554/ELIFE.61189 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 61499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.4720 - 3.1995 1.00 7959 143 0.1324 0.1276 REMARK 3 2 3.1995 - 2.5400 1.00 7604 136 0.1454 0.1777 REMARK 3 3 2.5400 - 2.2190 1.00 7546 136 0.1278 0.1407 REMARK 3 4 2.2190 - 2.0162 1.00 7497 135 0.1280 0.1681 REMARK 3 5 2.0162 - 1.8717 1.00 7497 135 0.1276 0.1657 REMARK 3 6 1.8717 - 1.7613 1.00 7443 134 0.1496 0.1634 REMARK 3 7 1.7613 - 1.6731 1.00 7430 134 0.2016 0.2382 REMARK 3 8 1.6731 - 1.6003 1.00 7436 134 0.2481 0.3004 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292109927. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61507 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.472 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MAL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M AS, 1.7% (V/V) PEG400, 0.085 M REMARK 280 HEPES PH 7.5, 15% (V/V) GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.82000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.82000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.82000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.82000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.82000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.82000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 69.82000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 69.82000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 69.82000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 69.82000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 69.82000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 69.82000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 69.82000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 69.82000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 69.82000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 69.82000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 69.82000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 69.82000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 104.73000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 34.91000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 34.91000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 104.73000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 104.73000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 104.73000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 34.91000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 34.91000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 104.73000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 34.91000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 104.73000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 34.91000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 104.73000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 34.91000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 34.91000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 34.91000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 104.73000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 34.91000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 104.73000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 104.73000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 104.73000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 34.91000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 34.91000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 104.73000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 104.73000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 34.91000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 34.91000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 34.91000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 34.91000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 104.73000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 34.91000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 104.73000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 34.91000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 104.73000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 104.73000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 104.73000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 606 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 751 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 952 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 979 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 320 REMARK 465 LYS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 PRO A 328 REMARK 465 MET A 329 REMARK 465 GLY A 330 REMARK 465 LEU A 331 REMARK 465 GLU A 332 REMARK 465 VAL A 333 REMARK 465 LEU A 334 REMARK 465 PHE A 335 REMARK 465 GLN A 336 REMARK 465 GLY A 337 REMARK 465 PRO A 338 REMARK 465 PRO A 339 REMARK 465 ARG A 533 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 840 O HOH A 886 2.01 REMARK 500 NH2 ARG A 466 O HOH A 701 2.05 REMARK 500 O HOH A 769 O HOH A 933 2.09 REMARK 500 O HOH A 832 O HOH A 959 2.11 REMARK 500 O HOH A 730 O HOH A 880 2.13 REMARK 500 O HOH A 705 O HOH A 887 2.16 REMARK 500 O LYS A 513 O HOH A 702 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 SO4 A 606 O3 SO4 A 606 14444 0.21 REMARK 500 O2 SO4 A 606 O4 SO4 A 606 14444 0.27 REMARK 500 S SO4 A 606 O3 SO4 A 606 14444 1.46 REMARK 500 S SO4 A 606 O1 SO4 A 606 14444 1.46 REMARK 500 S SO4 A 606 O4 SO4 A 606 14444 1.46 REMARK 500 S SO4 A 606 O2 SO4 A 606 14444 1.46 REMARK 500 O HOH A 874 O HOH A 933 5555 1.97 REMARK 500 O2 SO4 A 605 O HOH A 701 24444 2.07 REMARK 500 O4 SO4 A 606 O4 SO4 A 606 14444 2.12 REMARK 500 O HOH A 749 O HOH A 749 22554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 359 -152.36 -142.90 REMARK 500 ASP A 370 -146.69 -122.43 REMARK 500 ASN A 373 15.94 59.42 REMARK 500 HIS A 430 164.24 175.82 REMARK 500 ASP A 448 -145.66 -157.75 REMARK 500 LEU A 477 -40.20 71.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 979 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 980 DISTANCE = 6.23 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 608 DBREF1 6ZQP A 339 533 UNP A0A6A5PTF1_YEASX DBREF2 6ZQP A A0A6A5PTF1 339 533 SEQADV 6ZQP MET A 320 UNP A0A6A5PTF INITIATING METHIONINE SEQADV 6ZQP LYS A 321 UNP A0A6A5PTF EXPRESSION TAG SEQADV 6ZQP HIS A 322 UNP A0A6A5PTF EXPRESSION TAG SEQADV 6ZQP HIS A 323 UNP A0A6A5PTF EXPRESSION TAG SEQADV 6ZQP HIS A 324 UNP A0A6A5PTF EXPRESSION TAG SEQADV 6ZQP HIS A 325 UNP A0A6A5PTF EXPRESSION TAG SEQADV 6ZQP HIS A 326 UNP A0A6A5PTF EXPRESSION TAG SEQADV 6ZQP HIS A 327 UNP A0A6A5PTF EXPRESSION TAG SEQADV 6ZQP PRO A 328 UNP A0A6A5PTF EXPRESSION TAG SEQADV 6ZQP MET A 329 UNP A0A6A5PTF EXPRESSION TAG SEQADV 6ZQP GLY A 330 UNP A0A6A5PTF EXPRESSION TAG SEQADV 6ZQP LEU A 331 UNP A0A6A5PTF EXPRESSION TAG SEQADV 6ZQP GLU A 332 UNP A0A6A5PTF EXPRESSION TAG SEQADV 6ZQP VAL A 333 UNP A0A6A5PTF EXPRESSION TAG SEQADV 6ZQP LEU A 334 UNP A0A6A5PTF EXPRESSION TAG SEQADV 6ZQP PHE A 335 UNP A0A6A5PTF EXPRESSION TAG SEQADV 6ZQP GLN A 336 UNP A0A6A5PTF EXPRESSION TAG SEQADV 6ZQP GLY A 337 UNP A0A6A5PTF EXPRESSION TAG SEQADV 6ZQP PRO A 338 UNP A0A6A5PTF EXPRESSION TAG SEQRES 1 A 214 MET LYS HIS HIS HIS HIS HIS HIS PRO MET GLY LEU GLU SEQRES 2 A 214 VAL LEU PHE GLN GLY PRO PRO ARG ASP ILE ALA LEU GLY SEQRES 3 A 214 SER SER VAL VAL SER ILE LYS ASN GLN ALA LEU GLY GLY SEQRES 4 A 214 SER LEU LEU HIS SER HIS ILE GLN THR TYR PRO ASP GLY SEQRES 5 A 214 SER ASN GLN GLN GLN VAL THR CYS TYR GLY TYR LYS ASP SEQRES 6 A 214 ALA ASN ASN GLU TRP PHE PHE ASN ARG GLU ARG GLY LEU SEQRES 7 A 214 PRO SER TRP SER GLU ASN GLU THR ASP ILE GLU TYR LEU SEQRES 8 A 214 LYS PRO GLY THR SER TYR ARG LEU VAL HIS LYS SER THR SEQRES 9 A 214 GLY ARG ASN LEU HIS THR HIS PRO VAL ALA ALA PRO VAL SEQRES 10 A 214 SER LYS THR GLN TRP GLU VAL SER GLY TYR GLY ASP ASN SEQRES 11 A 214 VAL VAL GLY ASP ASN LYS ASP ASN TRP VAL ILE GLU ILE SEQRES 12 A 214 MET ASP GLN ARG GLY ASP GLU ASP PRO GLU LYS LEU HIS SEQRES 13 A 214 THR LEU THR THR SER PHE ARG ILE LYS ASN LEU GLU MET SEQRES 14 A 214 GLY CYS TYR LEU ALA GLN THR GLY ASN SER LEU PRO GLU SEQRES 15 A 214 TRP GLY PHE ARG GLN GLN GLU VAL VAL CYS MET LYS ASN SEQRES 16 A 214 PRO PHE LYS ARG ASP LYS ARG THR TRP TRP ASN ILE GLU SEQRES 17 A 214 THR HIS GLU ASN GLU ARG HET PG4 A 601 13 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PG4 C8 H18 O5 FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 SO4 4(O4 S 2-) FORMUL 10 HOH *280(H2 O) HELIX 1 AA1 ASP A 384 ASN A 387 5 4 HELIX 2 AA2 ASP A 453 ASP A 456 5 4 HELIX 3 AA3 PRO A 500 PHE A 504 5 5 HELIX 4 AA4 ASP A 519 THR A 522 5 4 SHEET 1 A 2 LEU A 360 SER A 363 0 SHEET 2 A 2 VAL A 377 TYR A 380 -1 N TYR A 380 O LEU A 360 SHEET 1 B 2 TRP A 389 ARG A 393 0 SHEET 2 B 2 TYR A 416 HIS A 420 -1 N VAL A 419 O PHE A 390 SHEET 1 C 2 ASN A 426 THR A 429 0 SHEET 2 C 2 VAL A 443 TYR A 446 -1 N TYR A 446 O ASN A 426 SHEET 1 D 2 TYR A 491 GLN A 494 0 SHEET 2 D 2 VAL A 509 MET A 512 -1 N MET A 512 O TYR A 491 SHEET 1 E 2 SER A 347 ASN A 353 0 SHEET 2 E 2 TRP A 524 ASN A 531 -1 N GLU A 530 O VAL A 348 SHEET 1 F 2 TRP A 458 GLN A 465 0 SHEET 2 F 2 THR A 479 ASN A 485 -1 N LYS A 484 O VAL A 459 SSBOND 1 CYS A 490 CYS A 511 1555 1555 2.27 SITE 1 AC1 5 SER A 399 ASN A 449 VAL A 450 HOH A 703 SITE 2 AC1 5 HOH A 852 SITE 1 AC2 7 HIS A 362 HIS A 364 ASP A 384 ASN A 386 SITE 2 AC2 7 GLN A 506 HOH A 780 HOH A 870 SITE 1 AC3 4 PHE A 516 LYS A 517 ARG A 518 HOH A 776 SITE 1 AC4 5 VAL A 436 SER A 437 LYS A 438 THR A 439 SITE 2 AC4 5 HOH A 912 SITE 1 AC5 6 ARG A 340 ARG A 466 THR A 476 HIS A 529 SITE 2 AC5 6 HOH A 701 HOH A 807 SITE 1 AC6 1 ARG A 505 SITE 1 AC7 7 GLN A 374 HIS A 428 HIS A 430 ASP A 453 SITE 2 AC7 7 LYS A 455 HOH A 821 HOH A 832 SITE 1 AC8 7 ASP A 370 GLY A 371 LYS A 438 HOH A 704 SITE 2 AC8 7 HOH A 736 HOH A 797 HOH A 893 CRYST1 139.640 139.640 139.640 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007161 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007161 0.00000